Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

24370473 .. 24373080

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTGTCCTCTTCCGCCACATTTTCCAGCCTCCTCCTCCTCCGCCTCCCTACCTTCATCCAAACTAAGGCCATTCTTCTGCTCCGCATCAGCATCATCCTCCATGGAGCCGCACCCAACAAAGTACATGGAGTTCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACTCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAATACTACCAGAACGACACTGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGACTACCTCAAAACATTTTATGAGGATACAAAACTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCGTCGCTTTACATCCGCAGCGTTGTGTCTCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGGAAACACCACAAAGAGTTCAGATGCAAATCATGAGGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

232

Amino Acids

25.76

Weight (kDa)

7.92

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	51 - 119	1.8e-26	Red chlorophyll catabolite reductase (RCC reductase)
RCC_reductase	PF06405	119 - 192	9.4e-27	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	15, 43, 85, 111, 463, 483
AclWI	GGATC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	126, 240
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AluBI	AGCT	5 cut(s)	349, 412, 425, 525, 647
AluI	AGCT	5 cut(s)	349, 412, 425, 525, 647
Alw26I	GTCTC	4 cut(s)	148, 185, 282, 480
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	69, 295
ApeKI	GCWGC	2 cut(s)	337, 465
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	554
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	324, 477
BciVI	GTATCC	2 cut(s)	190, 376
BcoDI	GTCTC	4 cut(s)	148, 185, 282, 480
BfaI	CTAG	2 cut(s)	326, 422
BfuI	GTATCC	2 cut(s)	190, 376
BisI	GCNGC	3 cut(s)	111, 338, 466
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	3 cut(s)	112, 339, 467
Bme18I	GGWCC	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	109, 634
BmsI	GCATC	4 cut(s)	96, 102, 592, 667
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	103, 401
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	103, 401
BseGI	GGATG	3 cut(s)	57, 96, 459
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	6 cut(s)	23, 26, 29, 295, 436, 545
BseXI	GCAGC	2 cut(s)	324, 477
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	71, 297
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	294, 557
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	4 cut(s)	148, 185, 282, 480
BsmBI	CGTCTC	2 cut(s)	148, 282
BsnI	GGCC	2 cut(s)	71, 297
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	290, 534
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	6 cut(s)	15, 43, 85, 111, 463, 483
BspANI	GGCC	2 cut(s)	71, 297
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	109, 634
BspPI	GGATC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	103, 401
BssMI	GATC	2 cut(s)	290, 534
BssT1I	CCWWGG	2 cut(s)	103, 401
Bst4CI	ACNGT	2 cut(s)	187, 344
Bst6I	CTCTTC	3 cut(s)	16, 285, 606
BstDEI	CTNAG	4 cut(s)	66, 426, 521, 526
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	57, 96, 459
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	2 cut(s)	293, 537
BstMAI	GTCTC	4 cut(s)	148, 185, 282, 480
BstMBI	GATC	2 cut(s)	290, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	324, 477
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuI	GTATCC	2 cut(s)	190, 376
BsuRI	GGCC	2 cut(s)	71, 297
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	57, 96, 459
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 340
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	554
CpoI	CGGWCCG	1 cut(s)	554
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	125, 239
CspI	CGGWCCG	1 cut(s)	554
CviAII	CATG	5 cut(s)	104, 128, 166, 272, 686
CviQI	GTAC	2 cut(s)	125, 239
DdeI	CTNAG	4 cut(s)	66, 426, 521, 526
DpnI	GATC	2 cut(s)	292, 536
DpnII	GATC	2 cut(s)	290, 534
Eam1104I	CTCTTC	3 cut(s)	16, 285, 606
EarI	CTCTTC	3 cut(s)	16, 285, 606
EciI	GGCGGA	2 cut(s)	4, 32
Eco130I	CCWWGG	2 cut(s)	103, 401
Eco47I	GGWCC	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	103, 401
ErhI	CCWWGG	2 cut(s)	103, 401
Esp3I	CGTCTC	2 cut(s)	148, 282
FaeI	CATG	5 cut(s)	107, 131, 169, 275, 689
FatI	CATG	5 cut(s)	103, 127, 165, 271, 685
Fnu4HI	GCNGC	3 cut(s)	111, 338, 466
FokI	GGATG	3 cut(s)	44, 83, 446
Fsp4HI	GCNGC	3 cut(s)	111, 338, 466
FspBI	CTAG	2 cut(s)	326, 422
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	111, 338, 466
HaeIII	GGCC	2 cut(s)	71, 297
HapII	CCGG	2 cut(s)	294, 557
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	5 cut(s)	107, 131, 169, 275, 689
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	2 cut(s)	523, 645
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	294, 557
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	290, 676
Hpy188III	TCNNGA	4 cut(s)	190, 415, 641, 686
Hpy99I	CGWCG	2 cut(s)	191, 454
HpyAV	CCTTC	3 cut(s)	64, 224, 228
HpyCH4III	ACNGT	2 cut(s)	187, 344
HpyCH4IV	ACGT	2 cut(s)	141, 237
HpyCH4V	TGCA	3 cut(s)	340, 563, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	4 cut(s)	66, 426, 521, 526
HpySE526I	ACGT	2 cut(s)	141, 237
Hsp92II	CATG	5 cut(s)	107, 131, 169, 275, 689
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	290, 534
LmnI	GCTCC	3 cut(s)	87, 107, 632
LpnPI	CCDG	7 cut(s)	40, 246, 263, 307, 377, 570, 572
Lsp1109I	GCAGC	2 cut(s)	324, 477
LweI	GCATC	4 cut(s)	96, 102, 592, 667
MaeI	CTAG	2 cut(s)	326, 422
MaeII	ACGT	2 cut(s)	141, 237
MalI	GATC	2 cut(s)	292, 536
MboI	GATC	2 cut(s)	290, 534
MboII	GAAGA	4 cut(s)	3, 68, 272, 623
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	571
MspI	CCGG	2 cut(s)	294, 557
MwoI	GCNNNNNNNGC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	290, 534
NlaIII	CATG	5 cut(s)	107, 131, 169, 275, 689
NlaIV	GGNNCC	2 cut(s)	109, 634
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	112, 339, 467
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	109, 634
PspPI	GGNCC	1 cut(s)	554
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	126, 240
RsaNI	GTAC	2 cut(s)	125, 239
Rsr2I	CGGWCCG	1 cut(s)	554
RsrII	CGGWCCG	1 cut(s)	554
SatI	GCNGC	3 cut(s)	111, 338, 466
Sau3AI	GATC	2 cut(s)	290, 534
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	187
SfaNI	GCATC	4 cut(s)	96, 102, 592, 667
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	6 cut(s)	15, 43, 85, 111, 463, 483
SspMI	CTAG	2 cut(s)	326, 422
StyI	CCWWGG	2 cut(s)	103, 401
TaaI	ACNGT	2 cut(s)	187, 344
TaiI	ACGT	2 cut(s)	144, 240
TaqI	TCGA	3 cut(s)	189, 414, 622
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	1 cut(s)	486
TatI	WGTACW	1 cut(s)	124
TauI	GCSGC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	265, 347
TseI	GCWGC	2 cut(s)	337, 465
TspDTI	ATGAA	3 cut(s)	46, 161, 310
TspRI	CASTG	2 cut(s)	265, 347
VpaK11BI	GGWCC	1 cut(s)	554
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	2 cut(s)	326, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.