Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Reverse (-)

17909832 .. 17913790

Gene Structure 3959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3336 bp

ATGGCGTCCACGCCTCCTCAAACTTCTAAAAAGGTCCGTAACAATTCCGGTAGCGGCCAAACCGTCAAATTTGCAAGACGAACATCTAGCGGAAGATATGTGAGTTTATCTCGAGATAATATAGAATTATCAGGCGAGCTCTCCGGGGATTATTCTAACTATACGGTGCACATACCTCCGACGCCGGACAATCAGCCCATGGCCACCAAAGCCGAAGAGCAATACGTGTCAAATTCTTTATTTACTGGTGGTTTCAACAGTGTAACACGTGCACATCTTATGGACAAAGTGATCGATTCAGATGTCACACACCCTCAGATGGCTGGCGCTAAAGGCTCTTCGTGTGCCATGCCTGCTTGCGACGGAAATGTCATGAAAGACGAGAGAGGAAAGGACGTGATGCCATGTGAATGCCGGTTTAAGATCTGTAGGGATTGCTTCATGGACGCCCAGAAAGAGACAGGCCTTTGTCCAGGATGCAAGGAACAATACAAAATCGGGGACCTAGATGACGATACGCCTGACTATTCTAGTGGTGCTCTCCCCTTACCAGCTCCAGGGAAAGATCAACGTGGGAACAACAACAACATGTCTATGATGAAGAGGAACCAAAACGGTGAATTTGATCACAACAGATGGCTATTCGAGACGCAAGGCACATATGGGTACGGTAATGCGTATTGGCCTCAAGACGAAATGTATGGCGATGATATGGATGAAGGGATGAGAGGCGGCATGGTGGAAACAGCTGACAAGCCATGGCGGCCACTGAGCCGACGAATCCCTATTCCAGCCGCCATCATTAGTCCTTACAGATTACTAATCGTCATTCGTTTTGTCGTGCTATGTTTTTTTCTAACTTGGAGGATCCGAAATCCTAACGAAGACGCAATATGGTTATGGCTCATGTCTATAATATGCGAGCTTTGGTTTGGATTTTCATGGATTCTAGACCAGATCCCTAAGTTGTGTCCAATAAACCGGTCCACTGACCTGGAAGTTCTTCGTGACAAATTTGACATGCCTTCTCCCTCCAACCCAACAGGGAGGTCGGATCTCCCAGGTATTGACCTTTTTGTGTCAACGGCAGATCCAGAGAAAGAGCCGCCCCTTGTCACCGCCAACACGATTCTGTCCATATTGGCCGTTGATTATCCGGTGGAGAAGGTGTCATGCTATCTTTCTGATGATGGAGGAGCTCTTCTATCCTTTGAAGCTATGGCAGAAGCTGCTAGCTTTGCGGATCTCTGGGTACCTTTTTGTCGCAAACATAACATTGAGCCTCGAAATCCAGACTCGTATTTCAGTTTGAAGATAGATCCAACAAAGAATAAGAGCAGAATTGATTTTGTCAAGGACAGAAGAAAGATTAAGAGGGAGTATGATGAATTCAAGGTTCGCATCAACGGCCTCCCTGACTCAATACGGAGGAGGTCAGATGCATTTAATGCAAGGGAGGAAATGAAAGCTCTAAAACAGATGAGGGAGAGCGGAGGTGATCCAACAGAGCCTGTGAAAGTCCCCAAAGCCACGTGGATGGCAGATGGCACCCACTGGCCAGGAACTTGGGCAGCCTCTACTCGAGAGCATTCCAAAGGTGATCATGCTGGGATTCTCCAGGTGATGTTGAAACCACCTAGCAGCGATCCATTAATTGGAAATAGCGACGATAAAGTCATTGATTTTTCAGACACGGACACTCGTTTACCCATGTTTGTGTATGTGTCACGTGAGAAGCGGCCTGGATATGATCACAACAAGAAAGCTGGAGCCATGAATGCACTTGTTCGTGCCTCTGCTATCCTCTCAAATGGACCTTTTATCCTTAATCTTGATTGTGATCATTACATCTATAACTGTAAGGCCGTACGAGAAGGGATGTGTTTTATGATGGACAGAGGTGGTGAAGACATTTGCTACATTCAGTTTCCGCAAAGATTCGAAGGCATCGATCCTTCTGATAGATATGCTAACAATAACACTGTATTTTTTGACGGTAATATGCGTGCTCTCGACGGTGTCCAGGGACCAGTTTATGTTGGAACAGGTACTATGTTTAGGCGCTTTGCTCTCTATGGTTTTGATCCACCCAACCCTGACAAGCTTCTTGAGAAGAAGGAATCAGAAACAGAGGCTCTAACCACCAGTGACTTTGACCCGGACCTTGATGTCACACAACTCCCCAAGCGCTTTGGGAACTCCACACTCCTAGCTGAGTCAATTCCAATTGCAGAGTTCCAAGGTCGTCCATTGGCAGACCACCCGGCTGTCAAGTACGGTCGTCCTCCCGGAGCCCTTAGAGTCCCTCGTGACCCACTTGATGCTACCACTGTCGCAGAGTCTGTTTCTGTAATCTCTTGTTGGTATGAGGATAAAACGGAGTGGGGAGATAGAGTTGGATGGATTTATGGGTCGGTGACAGAGGACGTGGTCACAGGATACCGCATGCATAATCGTGGGTGGCGCTCGGTTTACTGCATAACTAAGCGAGATTCTTTTCGAGGCTCTGCACCCATTAATCTCACGGATCGTCTTCACCAGGTGTTGCGGTGGGCCACTGGGTCTGTTGAGATCTTCTTCTCTAGAAACAACGCCATTCTCGCCTCCAAACGTCTCAAGTTCCTCCAACGTCTCGCATACCTCAATGTTGGGATATACCCTTTCACGTCTCTGTTTCTCATCCTCTATTGTTTTCTTCCGGCATTCTCTCTTTTCTCTGGACAGTTCATCGTGCGGACGCTCAGTATCTCCTTCTTGGTCTACCTTCTTATGATCACCATTTGTTTGATTGGATTGGCGGTTTTGGAGGTCAAGTGGTCTGGCATTGGGCTGGAAGAATGGTGGAGAAACGAACAGTGGTGGCTCATCTCAGGAACAAGCTCTCACCTTTACGCAGTGGTCCAAGGAGTCCTCAAAGTGATTGCAGGGATCGAGATCTCCTTTACCTTGACGACCAAGTCAGGGGGAGATGACAATGAAGACATATACGCGGATTTGTACATAGTGAAATGGTCGTCGCTGATGATACCGCCTATAGTGATAGCAATGGTGAACATAATAGCGATTGTGGTGGCGTTCATCAGGACAATATACCAAGCGGTGCCACAATGGAGCAAGCTAATCGGAGGAGCATTTTTCAGCTTCTGGGTGTTGGCGCATTTGTATCCATTTGCAAAAGGATTGATGGGACGAAGAGGCAAAACTCCAACCATAGTTTTTGTGTGGGCAGGTCTCATTGCCATCACCATCTCTCTACTGTGGACGGCCATAAACCCAAACACCGGACCTGCAGCTGCTGCAGAGGGTGTTGGAGGCGGTGGTTTTCAATTCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

1111

Amino Acids

124.59

Weight (kDa)

6.19

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	117 - 165	6.5e-16	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	356 - 707	1.8e-175	Cellulose synthase
Cellulose_synt	PF03552	716 - 1094	7.4e-192	Cellulose synthase
Glyco_trans_2_3	PF13632	798 - 925	5.3e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	368, 1673, 2168, 2956
Acc36I	ACCTGC	2 cut(s)	3218, 3295
Acc65I	GGTACC	1 cut(s)	1252
AccB1I	GGYRCC	3 cut(s)	1252, 1547, 3100
AccB7I	CCANNNNNTGG	1 cut(s)	1655
AccBSI	CCGCTC	1 cut(s)	1491
AccI	GTMKAC	1 cut(s)	2760
AccII	CGCG	1 cut(s)	2990
AcoI	YGGCCR	6 cut(s)	55, 201, 764, 1143, 1556, 3264
AcsI	RAATTY	5 cut(s)	68, 232, 620, 1013, 1388
AcvI	CACGTG	3 cut(s)	269, 1533, 1730
AcyI	GRCGYC	3 cut(s)	5, 182, 447
AdeI	CACNNNGTG	1 cut(s)	2542
AfaI	GTAC	6 cut(s)	668, 1254, 1869, 2050, 2276, 2999
AfeI	AGCGCT	1 cut(s)	2189
AfiI	CCNNNNNNNGG	5 cut(s)	319, 557, 1655, 2961, 3281
AflIII	ACRYGT	3 cut(s)	225, 266, 588
AgeI	ACCGGT	1 cut(s)	981
AgsI	TTSAA	6 cut(s)	256, 1214, 1312, 1393, 1630, 3326
AjiI	CACGTC	3 cut(s)	397, 2428, 2667
AjnI	CCWGG	9 cut(s)	472, 556, 993, 1060, 1558, 1617, 1741, 2022, 2538
Alw21I	GWGCWC	6 cut(s)	141, 171, 274, 541, 1201, 2011
Alw26I	GTCTC	6 cut(s)	452, 641, 2618, 2636, 2673, 3236
Alw44I	GTGCAC	2 cut(s)	167, 270
AlwNI	CAGNNNCTG	5 cut(s)	1229, 1511, 2342, 3144, 3296
Ama87I	CYCGRG	2 cut(s)	111, 1581
Aor51HI	AGCGCT	1 cut(s)	2189
ApaLI	GTGCAC	2 cut(s)	167, 270
ApeKI	GCWGC	6 cut(s)	1229, 1571, 1641, 3290, 3293, 3296
ApoI	RAATTY	5 cut(s)	68, 232, 620, 1013, 1388
AseI	ATTAAT	2 cut(s)	1652, 2517
AsiGI	ACCGGT	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	1002
Asp718I	GGTACC	1 cut(s)	1252
AspLEI	GCGC	5 cut(s)	329, 2064, 2190, 2466, 3157
AspS9I	GGNCC	9 cut(s)	34, 502, 984, 1814, 2027, 2161, 2553, 2899, 3284
AsuC2I	CCSGG	4 cut(s)	145, 2159, 2264, 2289
AsuII	TTCGAA	1 cut(s)	1941
AsuNHI	GCTAGC	1 cut(s)	1232
AvaI	CYCGRG	2 cut(s)	111, 1581
AvaII	GGWCC	8 cut(s)	34, 502, 984, 1814, 2027, 2161, 2899, 3284
BaeGI	GKGCMC	2 cut(s)	171, 274
BalI	TGGCCA	2 cut(s)	203, 1558
BamHI	GGATCC	1 cut(s)	867
BanI	GGYRCC	3 cut(s)	1252, 1547, 3100
BanII	GRGCYC	3 cut(s)	141, 1201, 2296
BauI	CACGAG	1 cut(s)	2307
BbrPI	CACGTG	3 cut(s)	269, 1533, 1730
BbsI	GAAGAC	4 cut(s)	891, 1914, 2525, 2985
Bbv12I	GWGCWC	6 cut(s)	141, 171, 274, 541, 1201, 2011
BbvI	GCAGC	6 cut(s)	1216, 1583, 1653, 3280, 3283, 3302
BceAI	ACGGC	5 cut(s)	1101, 1130, 1423, 1850, 3279
BcgI	CGANNNNNNTGC	2 cut(s)	3103, 3137
BciT130I	CCWGG	9 cut(s)	474, 558, 995, 1062, 1560, 1619, 1743, 2024, 2540
BciVI	GTATCC	2 cut(s)	2432, 3174
BclI	TGATCA	5 cut(s)	625, 1600, 1750, 1840, 2772
BcnI	CCSGG	4 cut(s)	145, 2159, 2264, 2289
BcoDI	GTCTC	6 cut(s)	452, 641, 2618, 2636, 2673, 3236
BfaI	CTAG	8 cut(s)	87, 506, 531, 950, 1233, 1638, 2210, 2583
BfmI	CTRYAG	4 cut(s)	427, 3033, 3288, 3297
BfoI	RGCGCY	4 cut(s)	330, 2065, 2191, 2467
BfuAI	ACCTGC	2 cut(s)	3218, 3295
BfuI	GTATCC	2 cut(s)	2432, 3174
BglI	GCCNNNNNGGC	1 cut(s)	763
BglII	AGATCT	3 cut(s)	423, 2571, 2934
Bme18I	GGWCC	8 cut(s)	34, 502, 984, 1814, 2027, 2161, 2899, 3284
BmeT110I	CYCGRG	2 cut(s)	111, 1581
BmgBI	CACGTC	3 cut(s)	397, 2428, 2667
BmgT120I	GGNCC	9 cut(s)	34, 502, 984, 1814, 2027, 2161, 2553, 2899, 3284
BmiI	GGNNCC	9 cut(s)	503, 608, 869, 1254, 1549, 1771, 2028, 2293, 3102
BmrI	ACTGGG	1 cut(s)	2568
BmsI	GCATC	6 cut(s)	390, 467, 1410, 1429, 1956, 2311
BmtI	GCTAGC	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	2568
BpiI	GAAGAC	4 cut(s)	891, 1914, 2525, 2985
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	3 cut(s)	540, 1601, 1788
Bpu14I	TTCGAA	1 cut(s)	1941
BpuEI	CTTGAG	3 cut(s)	672, 2129, 2600
BpuMI	CCSGG	4 cut(s)	145, 2159, 2264, 2289
Bsa29I	ATCGAT	2 cut(s)	294, 1950
BsaAI	YACGTR	4 cut(s)	226, 269, 1533, 1730
BsaBI	GATNNNNATC	2 cut(s)	1839, 2933
BsaHI	GRCGYC	3 cut(s)	5, 182, 447
BsaI	GGTCTC	1 cut(s)	3236
BsaJI	CCNNGG	8 cut(s)	144, 198, 557, 758, 1060, 2023, 2239, 2902
BsaWI	WCCGGW	4 cut(s)	47, 981, 1156, 3281
BsaXI	ACNNNNNCTCC	6 cut(s)	1154, 1184, 2379, 2409, 2798, 2828
Bsc4I	CCNNNNNNNGG	5 cut(s)	319, 557, 1655, 2961, 3281
Bse118I	RCCGGY	2 cut(s)	414, 981
Bse1I	ACTGG	5 cut(s)	250, 1559, 2030, 2145, 2563
Bse3DI	GCAATG	2 cut(s)	3051, 3234
Bse8I	GATNNNNATC	2 cut(s)	1839, 2933
BseBI	CCWGG	9 cut(s)	474, 558, 995, 1062, 1560, 1619, 1743, 2024, 2540
BseCI	ATCGAT	2 cut(s)	294, 1950
BseDI	CCNNGG	8 cut(s)	144, 198, 557, 758, 1060, 2023, 2239, 2902
BseGI	GGATG	7 cut(s)	482, 721, 729, 1542, 1884, 2405, 2679
BseJI	GATNNNNATC	2 cut(s)	1839, 2933
BseLI	CCNNNNNNNGG	5 cut(s)	319, 557, 1655, 2961, 3281
BseMI	GCAATG	2 cut(s)	3051, 3234
BseMII	CTCAG	5 cut(s)	329, 761, 2205, 2755, 2883
BseNI	ACTGG	5 cut(s)	250, 1559, 2030, 2145, 2563
BseRI	GAGGAG	4 cut(s)	6, 1209, 1444, 3141
BseSI	GKGCMC	2 cut(s)	171, 274
BseXI	GCAGC	6 cut(s)	1216, 1583, 1653, 3280, 3283, 3302
BseYI	CCCAGC	1 cut(s)	1607
BsgI	GTGCAG	1 cut(s)	2493
Bsh1236I	CGCG	1 cut(s)	2990
Bsh1285I	CGRYCG	1 cut(s)	2281
BshNI	GGYRCC	3 cut(s)	1252, 1547, 3100
BshTI	ACCGGT	1 cut(s)	981
BshVI	ATCGAT	2 cut(s)	294, 1950
BsiEI	CGRYCG	1 cut(s)	2281
BsiHKAI	GWGCWC	6 cut(s)	141, 171, 274, 541, 1201, 2011
BsiHKCI	CYCGRG	2 cut(s)	111, 1581
BsiWI	CGTACG	1 cut(s)	1867
BslFI	GGGAC	5 cut(s)	515, 1505, 2040, 2288, 3201
BslI	CCNNNNNNNGG	5 cut(s)	319, 557, 1655, 2961, 3281
BsmAI	GTCTC	6 cut(s)	452, 641, 2618, 2636, 2673, 3236
BsmBI	CGTCTC	4 cut(s)	641, 2618, 2636, 2673
BsmFI	GGGAC	5 cut(s)	515, 1505, 2040, 2288, 3201
BsmI	GAATGC	4 cut(s)	416, 1588, 1783, 2702
Bso31I	GGTCTC	1 cut(s)	3236
BsoBI	CYCGRG	2 cut(s)	111, 1581
Bsp119I	TTCGAA	1 cut(s)	1941
Bsp1286I	GDGCHC	7 cut(s)	141, 171, 274, 541, 1201, 2011, 2296
Bsp1407I	TGTACA	1 cut(s)	2997
Bsp19I	CCATGG	2 cut(s)	198, 758
BspCNI	CTCAG	5 cut(s)	328, 762, 2206, 2754, 2882
BspDI	ATCGAT	2 cut(s)	294, 1950
BspFNI	CGCG	1 cut(s)	2990
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	9 cut(s)	503, 608, 869, 1254, 1549, 1771, 2028, 2293, 3102
BspMAI	CTGCAG	2 cut(s)	3292, 3301
BspMI	ACCTGC	2 cut(s)	3218, 3295
BspOI	GCTAGC	1 cut(s)	1236
BspQI	GCTCTTC	3 cut(s)	210, 343, 1206
BspT104I	TTCGAA	1 cut(s)	1941
BspT107I	GGYRCC	3 cut(s)	1252, 1547, 3100
BspTNI	GGTCTC	1 cut(s)	3236
BsrBI	CCGCTC	1 cut(s)	1491
BsrDI	GCAATG	2 cut(s)	3051, 3234
BsrFI	RCCGGY	2 cut(s)	414, 981
BsrGI	TGTACA	1 cut(s)	2997
BsrI	ACTGG	5 cut(s)	250, 1559, 2030, 2145, 2563
BssAI	RCCGGY	2 cut(s)	414, 981
BssECI	CCNNGG	8 cut(s)	144, 198, 557, 758, 1060, 2023, 2239, 2902
BssNI	GRCGYC	3 cut(s)	5, 182, 447
BssSI	CACGAG	1 cut(s)	2307
BssT1I	CCWWGG	4 cut(s)	198, 758, 2239, 2902
Bst2BI	CACGAG	1 cut(s)	2307
Bst2UI	CCWGG	9 cut(s)	474, 558, 995, 1062, 1560, 1619, 1743, 2024, 2540
Bst6I	CTCTTC	5 cut(s)	210, 343, 596, 1206, 3187
BstACI	GRCGYC	3 cut(s)	5, 182, 447
BstAPI	GCANNNNNTGC	3 cut(s)	1229, 1448, 3296
BstAUI	TGTACA	1 cut(s)	2997
BstBAI	YACGTR	4 cut(s)	226, 269, 1533, 1730
BstBI	TTCGAA	1 cut(s)	1941
BstC8I	GCNNGC	9 cut(s)	137, 325, 354, 358, 923, 1234, 2007, 2447, 3116
BstDEI	CTNAG	8 cut(s)	315, 770, 963, 2214, 2297, 2484, 2741, 2869
BstDSI	CCRYGG	2 cut(s)	198, 758
BstF5I	GGATG	7 cut(s)	482, 721, 729, 1542, 1884, 2405, 2679
BstFNI	CGCG	1 cut(s)	2990
BstH2I	RGCGCY	4 cut(s)	330, 2065, 2191, 2467
BstHHI	GCGC	5 cut(s)	329, 2064, 2190, 2466, 3157
BstMAI	GTCTC	6 cut(s)	452, 641, 2618, 2636, 2673, 3236
BstMCI	CGRYCG	1 cut(s)	2281
BstNI	CCWGG	9 cut(s)	474, 558, 995, 1062, 1560, 1619, 1743, 2024, 2540
BstNSI	RCATGY	3 cut(s)	592, 1024, 2449
BstSFI	CTRYAG	4 cut(s)	427, 3033, 3288, 3297
BstSLI	GKGCMC	2 cut(s)	171, 274
BstUI	CGCG	1 cut(s)	2990
BstV1I	GCAGC	6 cut(s)	1216, 1583, 1653, 3280, 3283, 3302
BstV2I	GAAGAC	4 cut(s)	891, 1914, 2525, 2985
BstX2I	RGATCY	9 cut(s)	423, 867, 957, 1054, 1090, 1243, 1318, 2571, 2934
BstXI	CCANNNNNNTGG	3 cut(s)	994, 1537, 1566
BstYI	RGATCY	9 cut(s)	423, 867, 957, 1054, 1090, 1243, 1318, 2571, 2934
Bsu15I	ATCGAT	2 cut(s)	294, 1950
BsuI	GTATCC	2 cut(s)	2432, 3174
BsuTUI	ATCGAT	2 cut(s)	294, 1950
BtgI	CCRYGG	2 cut(s)	198, 758
BtgZI	GCGATG	1 cut(s)	720
BtrI	CACGTC	3 cut(s)	397, 2428, 2667
BtsCI	GGATG	7 cut(s)	482, 721, 729, 1542, 1884, 2405, 2679
BtsI	GCAGTG	1 cut(s)	2901
BveI	ACCTGC	2 cut(s)	3218, 3295
Cac8I	GCNNGC	9 cut(s)	137, 325, 354, 358, 923, 1234, 2007, 2447, 3116
CaiI	CAGNNNCTG	5 cut(s)	1229, 1511, 2342, 3144, 3296
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	5 cut(s)	329, 2064, 2190, 2466, 3157
Cfr10I	RCCGGY	2 cut(s)	414, 981
Cfr13I	GGNCC	9 cut(s)	34, 502, 984, 1814, 2027, 2161, 2553, 2899, 3284
ClaI	ATCGAT	2 cut(s)	294, 1950
CseI	GACGC	5 cut(s)	190, 455, 658, 896, 2746
CsiI	ACCWGGT	1 cut(s)	2538
Csp6I	GTAC	6 cut(s)	667, 1253, 1868, 2049, 2275, 2998
CspAI	ACCGGT	1 cut(s)	981
CviQI	GTAC	6 cut(s)	667, 1253, 1868, 2049, 2275, 2998
DdeI	CTNAG	8 cut(s)	315, 770, 963, 2214, 2297, 2484, 2741, 2869
DraIII	CACNNNGTG	1 cut(s)	2542
DrdI	GACNNNNNNGTC	4 cut(s)	368, 1673, 2168, 2956
DseDI	GACNNNNNNGTC	4 cut(s)	368, 1673, 2168, 2956
EaeI	YGGCCR	6 cut(s)	55, 201, 764, 1143, 1556, 3264
Eam1104I	CTCTTC	5 cut(s)	210, 343, 596, 1206, 3187
EarI	CTCTTC	5 cut(s)	210, 343, 596, 1206, 3187
Ecl136II	GAGCTC	2 cut(s)	139, 1199
Eco130I	CCWWGG	4 cut(s)	198, 758, 2239, 2902
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	3 cut(s)	141, 1201, 2296
Eco31I	GGTCTC	1 cut(s)	3236
Eco47I	GGWCC	8 cut(s)	34, 502, 984, 1814, 2027, 2161, 2899, 3284
Eco47III	AGCGCT	1 cut(s)	2189
Eco53kI	GAGCTC	2 cut(s)	139, 1199
Eco72I	CACGTG	3 cut(s)	269, 1533, 1730
Eco88I	CYCGRG	2 cut(s)	111, 1581
EcoICRI	GAGCTC	2 cut(s)	139, 1199
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	1388
EcoRII	CCWGG	9 cut(s)	472, 556, 993, 1060, 1558, 1617, 1741, 2022, 2538
EcoT14I	CCWWGG	4 cut(s)	198, 758, 2239, 2902
EcoT22I	ATGCAT	2 cut(s)	1444, 2451
EcoT38I	GRGCYC	3 cut(s)	141, 1201, 2296
ErhI	CCWWGG	4 cut(s)	198, 758, 2239, 2902
Esp3I	CGTCTC	4 cut(s)	641, 2618, 2636, 2673
FaqI	GGGAC	5 cut(s)	515, 1505, 2040, 2288, 3201
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	5 cut(s)	625, 1600, 1750, 1840, 2772
FblI	GTMKAC	1 cut(s)	2760
FokI	GGATG	7 cut(s)	489, 728, 736, 1549, 1891, 2412, 2666
FriOI	GRGCYC	3 cut(s)	141, 1201, 2296
FspBI	CTAG	8 cut(s)	87, 506, 531, 950, 1233, 1638, 2210, 2583
GlaI	GCGC	5 cut(s)	328, 2063, 2189, 2465, 3156
GsaI	CCCAGC	1 cut(s)	1611
GsuI	CTGGAG	3 cut(s)	540, 1601, 1788
HaeII	RGCGCY	4 cut(s)	330, 2065, 2191, 2467
HgaI	GACGC	5 cut(s)	190, 455, 658, 896, 2746
HhaI	GCGC	5 cut(s)	329, 2064, 2190, 2466, 3157
Hin1I	GRCGYC	3 cut(s)	5, 182, 447
Hin6I	GCGC	5 cut(s)	327, 2062, 2188, 2464, 3155
HinP1I	GCGC	5 cut(s)	327, 2062, 2188, 2464, 3155
HincII	GTYRAC	1 cut(s)	1083
HindII	GTYRAC	1 cut(s)	1083
HindIII	AAGCTT	1 cut(s)	2102
Hpy99I	CGWCG	6 cut(s)	184, 365, 780, 1670, 2018, 3019
HpyAV	CCTTC	9 cut(s)	713, 1035, 1159, 1868, 1937, 1965, 2110, 2761, 2774
HpyF3I	CTNAG	8 cut(s)	315, 770, 963, 2214, 2297, 2484, 2741, 2869
Hsp92I	GRCGYC	3 cut(s)	5, 182, 447
HspAI	GCGC	5 cut(s)	327, 2062, 2188, 2464, 3155
KpnI	GGTACC	1 cut(s)	1256
Ksp22I	TGATCA	5 cut(s)	625, 1600, 1750, 1840, 2772
LguI	GCTCTTC	3 cut(s)	210, 343, 1206
LmnI	GCTCC	6 cut(s)	559, 1196, 1769, 2291, 3111, 3128
Lsp1109I	GCAGC	6 cut(s)	1216, 1583, 1653, 3280, 3283, 3302
LweI	GCATC	6 cut(s)	390, 467, 1410, 1429, 1956, 2311
MabI	ACCWGGT	1 cut(s)	2538
MaeI	CTAG	8 cut(s)	87, 506, 531, 950, 1233, 1638, 2210, 2583
MbiI	CCGCTC	1 cut(s)	1491
MfeI	CAATTG	1 cut(s)	2226
MflI	RGATCY	9 cut(s)	423, 867, 957, 1054, 1090, 1243, 1318, 2571, 2934
MhlI	GDGCHC	7 cut(s)	141, 171, 274, 541, 1201, 2011, 2296
MlsI	TGGCCA	2 cut(s)	203, 1558
MluNI	TGGCCA	2 cut(s)	203, 1558
MlyI	GAGTC	6 cut(s)	1289, 1412, 2225, 2310, 2348, 2916
Mox20I	TGGCCA	2 cut(s)	203, 1558
Mph1103I	ATGCAT	2 cut(s)	1444, 2451
MroXI	GAANNNNTTC	1 cut(s)	1002
MscI	TGGCCA	2 cut(s)	203, 1558
MseI	TTAA	6 cut(s)	420, 1371, 1446, 1652, 1827, 2517
MslI	CAYNNNNRTG	5 cut(s)	409, 593, 1535, 1715, 2454
Msp20I	TGGCCA	2 cut(s)	203, 1558
MspA1I	CMGCKG	2 cut(s)	749, 3293
MunI	CAATTG	1 cut(s)	2226
Mva1269I	GAATGC	4 cut(s)	416, 1588, 1783, 2702
MvaI	CCWGG	9 cut(s)	474, 558, 995, 1062, 1560, 1619, 1743, 2024, 2540
MvnI	CGCG	1 cut(s)	2990
NciI	CCSGG	4 cut(s)	145, 2159, 2264, 2289
NcoI	CCATGG	2 cut(s)	198, 758
NdeI	CATATG	1 cut(s)	661
NheI	GCTAGC	1 cut(s)	1232
NlaIV	GGNNCC	9 cut(s)	503, 608, 869, 1254, 1549, 1771, 2028, 2293, 3102
NmuCI	GTSAC	9 cut(s)	304, 1007, 1114, 1725, 2147, 2170, 2309, 2416, 2431
NsiI	ATGCAT	2 cut(s)	1444, 2451
NspI	RCATGY	3 cut(s)	592, 1024, 2449
NspV	TTCGAA	1 cut(s)	1941
PaeI	GCATGC	1 cut(s)	2449
PaeR7I	CTCGAG	2 cut(s)	111, 1581
PagI	TCATGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	465
PciI	ACATGT	1 cut(s)	588
PciSI	GCTCTTC	3 cut(s)	210, 343, 1206
PcsI	WCGNNNNNNNCGW	1 cut(s)	1947
PctI	GAATGC	4 cut(s)	416, 1588, 1783, 2702
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	8 cut(s)	296, 780, 946, 1129, 1612, 1938, 2120, 2492
Pfl23II	CGTACG	1 cut(s)	1867
PflFI	GACNNNGTC	3 cut(s)	2018, 2429, 2956
PflMI	CCANNNNNTGG	1 cut(s)	1655
PfoI	TCCNGGA	2 cut(s)	472, 2287
PinAI	ACCGGT	1 cut(s)	981
PleI	GAGTC	6 cut(s)	1289, 1412, 2224, 2309, 2347, 2915
PmaCI	CACGTG	3 cut(s)	269, 1533, 1730
PmlI	CACGTG	3 cut(s)	269, 1533, 1730
PpsI	GAGTC	6 cut(s)	1289, 1412, 2224, 2309, 2347, 2915
Ppu21I	YACGTR	4 cut(s)	226, 269, 1533, 1730
PpuMI	RGGWCCY	1 cut(s)	502
PscI	ACATGT	1 cut(s)	588
PshBI	ATTAAT	2 cut(s)	1652, 2517
Psp124BI	GAGCTC	2 cut(s)	141, 1201
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	9 cut(s)	472, 556, 993, 1060, 1558, 1617, 1741, 2022, 2538
PspCI	CACGTG	3 cut(s)	269, 1533, 1730
PspFI	CCCAGC	1 cut(s)	1607
PspGI	CCWGG	9 cut(s)	472, 556, 993, 1060, 1558, 1617, 1741, 2022, 2538
PspLI	CGTACG	1 cut(s)	1867
PspN4I	GGNNCC	9 cut(s)	503, 608, 869, 1254, 1549, 1771, 2028, 2293, 3102
PspPI	GGNCC	9 cut(s)	34, 502, 984, 1814, 2027, 2161, 2553, 2899, 3284
PspPPI	RGGWCCY	1 cut(s)	502
PstI	CTGCAG	2 cut(s)	3292, 3301
PstNI	CAGNNNCTG	5 cut(s)	1229, 1511, 2342, 3144, 3296
PsuI	RGATCY	9 cut(s)	423, 867, 957, 1054, 1090, 1243, 1318, 2571, 2934
PsyI	GACNNNGTC	3 cut(s)	2018, 2429, 2956
PvuII	CAGCTG	2 cut(s)	749, 3293
RsaI	GTAC	6 cut(s)	668, 1254, 1869, 2050, 2276, 2999
RsaNI	GTAC	6 cut(s)	667, 1253, 1868, 2049, 2275, 2998
RseI	CAYNNNNRTG	5 cut(s)	409, 593, 1535, 1715, 2454
SacI	GAGCTC	2 cut(s)	141, 1201
SapI	GCTCTTC	3 cut(s)	210, 343, 1206
SaqAI	TTAA	6 cut(s)	420, 1371, 1446, 1652, 1827, 2517
Sau96I	GGNCC	9 cut(s)	34, 502, 984, 1814, 2027, 2161, 2553, 2899, 3284
SchI	GAGTC	6 cut(s)	1289, 1412, 2225, 2310, 2348, 2916
SduI	GDGCHC	7 cut(s)	141, 171, 274, 541, 1201, 2011, 2296
SexAI	ACCWGGT	1 cut(s)	2538
SfaNI	GCATC	6 cut(s)	390, 467, 1410, 1429, 1956, 2311
SfcI	CTRYAG	4 cut(s)	427, 3033, 3288, 3297
Sfr274I	CTCGAG	2 cut(s)	111, 1581
SfuI	TTCGAA	1 cut(s)	1941
SinI	GGWCC	8 cut(s)	34, 502, 984, 1814, 2027, 2161, 2899, 3284
SlaI	CTCGAG	2 cut(s)	111, 1581
SmiMI	CAYNNNNRTG	5 cut(s)	409, 593, 1535, 1715, 2454
SmlI	CTYRAG	5 cut(s)	111, 687, 1581, 2108, 2615
SmoI	CTYRAG	5 cut(s)	111, 687, 1581, 2108, 2615
SphI	GCATGC	1 cut(s)	2449
SseBI	AGGCCT	1 cut(s)	465
SspMI	CTAG	8 cut(s)	87, 506, 531, 950, 1233, 1638, 2210, 2583
SstI	GAGCTC	2 cut(s)	141, 1201
StuI	AGGCCT	1 cut(s)	465
StyI	CCWWGG	4 cut(s)	198, 758, 2239, 2902
TatI	WGTACW	1 cut(s)	2997
TauI	GCSGC	6 cut(s)	57, 735, 766, 797, 1108, 1741
TfiI	GAWTC	8 cut(s)	296, 780, 946, 1129, 1612, 1938, 2120, 2492
Tru1I	TTAA	6 cut(s)	420, 1371, 1446, 1652, 1827, 2517
Tru9I	TTAA	6 cut(s)	420, 1371, 1446, 1652, 1827, 2517
TseFI	GTSAC	9 cut(s)	304, 1007, 1114, 1725, 2147, 2170, 2309, 2416, 2431
TseI	GCWGC	6 cut(s)	1229, 1571, 1641, 3290, 3293, 3296
Tsp45I	GTSAC	9 cut(s)	304, 1007, 1114, 1725, 2147, 2170, 2309, 2416, 2431
TspGWI	ACGGA	6 cut(s)	26, 378, 1441, 1709, 2393, 2540
Tth111I	GACNNNGTC	3 cut(s)	2018, 2429, 2956
Van91I	CCANNNNNTGG	1 cut(s)	1655
VneI	GTGCAC	2 cut(s)	167, 270
VpaK11BI	GGWCC	8 cut(s)	34, 502, 984, 1814, 2027, 2161, 2899, 3284
VspI	ATTAAT	2 cut(s)	1652, 2517
XapI	RAATTY	5 cut(s)	68, 232, 620, 1013, 1388
XbaI	TCTAGA	2 cut(s)	949, 2582
XceI	RCATGY	3 cut(s)	592, 1024, 2449
XhoI	CTCGAG	2 cut(s)	111, 1581
XmiI	GTMKAC	1 cut(s)	2760
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	8 cut(s)	87, 506, 531, 950, 1233, 1638, 2210, 2583
Zsp2I	ATGCAT	2 cut(s)	1444, 2451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.