Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012649.1

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Reverse (-)

10553 .. 11993

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012649.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atgtacgtgggaactgggacaatgtttaggcggtttgccctttatggttttgaccctccaaatcctgacaaggtcgccgcacagaaggcagcaacagcagctactggtgactcagagacacaaaaagagcccttgacggcacctccggcacagaccacacaacccttgacagctagtgaactcgaccctgatcttgataccaatctgctgcctaagcgttttggaaattctaccatgttagctgaatccatacctgttgctgagtatcaaggacgccccctagctgatcatcctgcagtcaaattcggacgccctcctggtattcttagggtacctcgtgatccacttgatgctacaactgttgctgaagctgtctccgccatttcttgctggtacgaggacaagactgaatggggagaccgagtgggttggatttatggatcagtcacagaagatgtcgtgacaggctaccgtatgcacaaccgtggatggcattcagtttattgtatcaccaagcgtgatgcattccggggttcagctccgattaatcttactgatcgactccaccaagtgcttaggtgggcaactggctctgtcgaaattttcttctccagaaacaatgccataattggttccatgaaactgaaaatactgcagcgtcttgcttacattaacgttggcgtctaccctttcacctctctctttctcattttgtactgcttcctccctgcactctcactctactctgggcagtttatcgtggctaatgtcaatgtcaccttcttagcctttttgctaaccattacattatgcctgatagggctggccctgctagaggtgaagtggtctggcataggattggaagagtggtggaggaatgaacagttctggctcatttccggaaccagcgctcaccttgctgctgtggtgcaagggattctcaaagttattgcaggaattgaaatctctttcacacttacttctaagtctgcaggagatgagaatgatgatgtctttgcagaattacaccttgttaagtggacttggttgatgattcccccaattgttatcgcactcgtcaacataattgccatttgcattgcagtttcaagagagctttatgctacaaatgctcagtgggctaagcttgttggtggaactttcttcagtttgtgggtgttggctcatttgtatccttttgcaaagggtttgatgggaaggagaggaaagacgcctacaattgtgtttgtttgggcaggtctcattgcaattacgctatccttgctctgggctgccgttgcgccaccaccaggaggcggacaagcggcaggacaattccaattcccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

449

Amino Acids

49.35

Weight (kDa)

7.65

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1247
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	2 cut(s)	139, 331
AccI	GTMKAC	1 cut(s)	684
AccIII	TCCGGA	1 cut(s)	899
AciI	CCGC	5 cut(s)	31, 78, 378, 1317, 1325
AclI	AACGTT	1 cut(s)	675
AclWI	GGATC	2 cut(s)	335, 448
AcsI	RAATTY	3 cut(s)	226, 302, 600
AcuI	CTGAAG	2 cut(s)	387, 1150
AcyI	GRCGYC	4 cut(s)	274, 310, 681, 1232
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	4 cut(s)	5, 333, 395, 716
AfeI	AGCGCT	1 cut(s)	910
AfiI	CCNNNNNNNGG	5 cut(s)	835, 1287, 1310, 1313, 1316
AgsI	TTSAA	2 cut(s)	962, 1110
AjnI	CCWGG	2 cut(s)	316, 1309
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	8 cut(s)	101, 173, 242, 284, 371, 539, 1117, 1147
AluI	AGCT	8 cut(s)	101, 173, 242, 284, 371, 539, 1117, 1147
Alw26I	GTCTC	4 cut(s)	110, 379, 411, 1265
AlwI	GGATC	2 cut(s)	335, 448
AlwNI	CAGNNNCTG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	899
Aor51HI	AGCGCT	1 cut(s)	910
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	6 cut(s)	89, 98, 208, 655, 920, 1292
ApoI	RAATTY	3 cut(s)	226, 302, 600
AseI	ATTAAT	1 cut(s)	546
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	911, 1303
AspS9I	GGNCC	1 cut(s)	826
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	6 cut(s)	119, 502, 685, 769, 850, 905
BanI	GGYRCC	2 cut(s)	139, 331
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	336
BbvI	GCAGC	6 cut(s)	101, 110, 195, 667, 907, 1279
BccI	CCATC	2 cut(s)	483, 1207
BceAI	ACGGC	2 cut(s)	153, 1280
BciT130I	CCWGG	2 cut(s)	318, 1311
BciVI	GTATCC	1 cut(s)	1203
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	4 cut(s)	110, 379, 411, 1265
BfaI	CTAG	3 cut(s)	174, 281, 833
BfmI	CTRYAG	3 cut(s)	294, 653, 990
BfoI	RGCGCY	1 cut(s)	912
BfuAI	ACCTGC	1 cut(s)	1247
BfuI	GTATCC	1 cut(s)	1203
BisI	GCNGC	8 cut(s)	78, 90, 99, 209, 656, 921, 1293, 1326
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	8 cut(s)	79, 91, 100, 210, 657, 922, 1294, 1327
Bme1390I	CCNGG	3 cut(s)	318, 530, 1311
BmgT120I	GGNCC	1 cut(s)	826
BmiI	GGNNCC	4 cut(s)	141, 333, 634, 904
BmrFI	CCNGG	3 cut(s)	318, 530, 1311
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	340, 511
BmuI	ACTGGG	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	595
Bpu10I	CCTNAGC	2 cut(s)	213, 575
Bpu1102I	GCTNAGC	1 cut(s)	1143
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	4 cut(s)	274, 310, 681, 1232
BsaI	GGTCTC	2 cut(s)	411, 1265
BsaJI	CCNNGG	2 cut(s)	484, 529
BsaWI	WCCGGW	1 cut(s)	899
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 408, 438
Bsc4I	CCNNNNNNNGG	5 cut(s)	835, 1287, 1310, 1313, 1316
Bse1I	ACTGG	3 cut(s)	19, 109, 592
Bse3DI	GCAATG	2 cut(s)	1098, 1263
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	899
BseBI	CCWGG	2 cut(s)	318, 1311
BseDI	CCNNGG	2 cut(s)	484, 529
BseGI	GGATG	2 cut(s)	289, 494
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	5 cut(s)	835, 1287, 1310, 1313, 1316
BseMI	GCAATG	2 cut(s)	1098, 1263
BseMII	CTCAG	3 cut(s)	126, 252, 1148
BseNI	ACTGG	3 cut(s)	19, 109, 592
BseXI	GCAGC	6 cut(s)	101, 110, 195, 667, 907, 1279
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	1 cut(s)	827
BshNI	GGYRCC	2 cut(s)	139, 331
BsiSI	CCGG	3 cut(s)	146, 529, 900
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	5 cut(s)	835, 1287, 1310, 1313, 1316
BsmAI	GTCTC	4 cut(s)	110, 379, 411, 1265
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	493, 524
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	2 cut(s)	411, 1265
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	899
Bsp143I	GATC	5 cut(s)	190, 286, 340, 440, 556
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	5 cut(s)	31, 78, 378, 1317, 1325
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	3 cut(s)	125, 253, 1147
BspEI	TCCGGA	1 cut(s)	899
BspLI	GGNNCC	4 cut(s)	141, 333, 634, 904
BspMAI	CTGCAG	3 cut(s)	298, 657, 994
BspMI	ACCTGC	1 cut(s)	1247
BspPI	GGATC	2 cut(s)	335, 448
BspT107I	GGYRCC	2 cut(s)	139, 331
BspTNI	GGTCTC	2 cut(s)	411, 1265
BsrDI	GCAATG	2 cut(s)	1098, 1263
BsrI	ACTGG	3 cut(s)	19, 109, 592
BssECI	CCNNGG	2 cut(s)	484, 529
BssMI	GATC	5 cut(s)	190, 286, 340, 440, 556
BssNI	GRCGYC	4 cut(s)	274, 310, 681, 1232
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	318, 1311
Bst4CI	ACNGT	4 cut(s)	361, 473, 485, 885
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	4 cut(s)	274, 310, 681, 1232
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	9 cut(s)	112, 213, 261, 326, 575, 784, 984, 1134, 1143
BstDSI	CCRYGG	1 cut(s)	484
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	289, 494
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	2 cut(s)	911, 1303
BstKTI	GATC	5 cut(s)	193, 289, 343, 443, 559
BstMAI	GTCTC	4 cut(s)	110, 379, 411, 1265
BstMBI	GATC	5 cut(s)	190, 286, 340, 440, 556
BstNI	CCWGG	2 cut(s)	318, 1311
BstSCI	CCNGG	3 cut(s)	316, 528, 1309
BstSFI	CTRYAG	3 cut(s)	294, 653, 990
BstV1I	GCAGC	6 cut(s)	101, 110, 195, 667, 907, 1279
BsuI	GTATCC	1 cut(s)	1203
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	289, 494
BtsIMutI	CAGTG	1 cut(s)	1142
BveI	ACCTGC	1 cut(s)	1247
Cac8I	GCNNGC	1 cut(s)	825
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	2 cut(s)	911, 1303
Cfr13I	GGNCC	1 cut(s)	826
CseI	GACGC	5 cut(s)	282, 318, 647, 670, 1240
Csp6I	GTAC	4 cut(s)	4, 332, 394, 715
CviAII	CATG	2 cut(s)	235, 637
CviQI	GTAC	4 cut(s)	4, 332, 394, 715
DdeI	CTNAG	9 cut(s)	112, 213, 261, 326, 575, 784, 984, 1134, 1143
DpnI	GATC	5 cut(s)	192, 288, 342, 442, 558
DpnII	GATC	5 cut(s)	190, 286, 340, 440, 556
DraIII	CACNNNGTG	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
EciI	GGCGGA	2 cut(s)	367, 1332
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	2 cut(s)	411, 1265
Eco47III	AGCGCT	1 cut(s)	910
Eco57I	CTGAAG	2 cut(s)	387, 1150
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	316, 1309
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	238, 640
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	234, 636
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	8 cut(s)	78, 90, 99, 209, 656, 921, 1293, 1326
FokI	GGATG	2 cut(s)	276, 501
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	8 cut(s)	78, 90, 99, 209, 656, 921, 1293, 1326
FspBI	CTAG	3 cut(s)	174, 281, 833
GlaI	GCGC	2 cut(s)	910, 1302
GluI	GCNGC	8 cut(s)	78, 90, 99, 209, 656, 921, 1293, 1326
GsuI	CTGGAG	1 cut(s)	595
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	3 cut(s)	146, 529, 900
HgaI	GACGC	5 cut(s)	282, 318, 647, 670, 1240
HhaI	GCGC	2 cut(s)	911, 1303
Hin1I	GRCGYC	4 cut(s)	274, 310, 681, 1232
Hin1II	CATG	2 cut(s)	238, 640
Hin6I	GCGC	2 cut(s)	909, 1301
HinP1I	GCGC	2 cut(s)	909, 1301
HincII	GTYRAC	1 cut(s)	1081
HindII	GTYRAC	1 cut(s)	1081
HindIII	AAGCTT	1 cut(s)	1145
HinfI	GANTC	5 cut(s)	110, 245, 561, 937, 1054
HpaII	CCGG	3 cut(s)	146, 529, 900
HphI	GGTGA	6 cut(s)	119, 502, 685, 769, 850, 905
Hpy166II	GTNNAC	4 cut(s)	179, 685, 1041, 1081
Hpy188I	TCNGA	3 cut(s)	115, 308, 543
Hpy188III	TCNNGA	7 cut(s)	65, 194, 338, 460, 612, 900, 1110
Hpy8I	GTNNAC	4 cut(s)	179, 685, 1041, 1081
HpyAV	CCTTC	3 cut(s)	79, 790, 1212
HpyCH4III	ACNGT	4 cut(s)	361, 473, 485, 885
HpyCH4IV	ACGT	2 cut(s)	6, 675
HpyF3I	CTNAG	9 cut(s)	112, 213, 261, 326, 575, 784, 984, 1134, 1143
HpySE526I	ACGT	2 cut(s)	6, 675
Hsp92I	GRCGYC	4 cut(s)	274, 310, 681, 1232
Hsp92II	CATG	2 cut(s)	238, 640
HspAI	GCGC	2 cut(s)	909, 1301
Kpn2I	TCCGGA	1 cut(s)	899
KpnI	GGTACC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	190, 286, 340, 440, 556
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	6 cut(s)	101, 110, 195, 667, 907, 1279
LweI	GCATC	2 cut(s)	340, 511
MaeI	CTAG	3 cut(s)	174, 281, 833
MaeII	ACGT	2 cut(s)	6, 675
MaeIII	GTNAC	4 cut(s)	107, 445, 460, 775
MalI	GATC	5 cut(s)	192, 288, 342, 442, 558
MboI	GATC	5 cut(s)	190, 286, 340, 440, 556
MboII	GAAGA	4 cut(s)	464, 598, 875, 1156
MfeI	CAATTG	2 cut(s)	1062, 1239
MhlI	GDGCHC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	104, 555
MmeI	TCCRAC	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	526
MroI	TCCGGA	1 cut(s)	899
MseI	TTAA	3 cut(s)	546, 672, 1035
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	3 cut(s)	146, 529, 900
MspR9I	CCNGG	3 cut(s)	318, 530, 1311
MunI	CAATTG	2 cut(s)	1062, 1239
Mva1269I	GAATGC	2 cut(s)	493, 524
MvaI	CCWGG	2 cut(s)	318, 1311
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	5 cut(s)	190, 286, 340, 440, 556
NlaIII	CATG	2 cut(s)	238, 640
NlaIV	GGNNCC	4 cut(s)	141, 333, 634, 904
NmuCI	GTSAC	4 cut(s)	107, 445, 460, 775
NsiI	ATGCAT	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	483
PctI	GAATGC	2 cut(s)	493, 524
PfeI	GAWTC	3 cut(s)	245, 937, 1054
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	8 cut(s)	79, 91, 100, 210, 657, 922, 1294, 1327
PleI	GAGTC	2 cut(s)	104, 555
PpsI	GAGTC	2 cut(s)	104, 555
Ppu21I	YACGTR	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	316, 1309
PspGI	CCWGG	2 cut(s)	316, 1309
PspN4I	GGNNCC	4 cut(s)	141, 333, 634, 904
PspPI	GGNCC	1 cut(s)	826
PstI	CTGCAG	3 cut(s)	298, 657, 994
PstNI	CAGNNNCTG	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	4 cut(s)	5, 333, 395, 716
RsaNI	GTAC	4 cut(s)	4, 332, 394, 715
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	546, 672, 1035
SatI	GCNGC	8 cut(s)	78, 90, 99, 209, 656, 921, 1293, 1326
Sau3AI	GATC	5 cut(s)	190, 286, 340, 440, 556
Sau96I	GGNCC	1 cut(s)	826
SchI	GAGTC	2 cut(s)	104, 555
ScrFI	CCNGG	3 cut(s)	318, 530, 1311
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	340, 511
SfcI	CTRYAG	3 cut(s)	294, 653, 990
SmiMI	CAYNNNNRTG	1 cut(s)	483
SsiI	CCGC	5 cut(s)	31, 78, 378, 1317, 1325
SspMI	CTAG	3 cut(s)	174, 281, 833
StyD4I	CCNGG	3 cut(s)	316, 528, 1309
TaaI	ACNGT	4 cut(s)	361, 473, 485, 885
TaiI	ACGT	2 cut(s)	9, 678
TaqI	TCGA	3 cut(s)	183, 559, 597
TaqII	GACCGA	1 cut(s)	435
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	2 cut(s)	80, 1328
TfiI	GAWTC	3 cut(s)	245, 937, 1054
Tru1I	TTAA	3 cut(s)	546, 672, 1035
Tru9I	TTAA	3 cut(s)	546, 672, 1035
TscAI	CASTG	1 cut(s)	1142
TseFI	GTSAC	4 cut(s)	107, 445, 460, 775
TseI	GCWGC	6 cut(s)	89, 98, 208, 655, 920, 1292
Tsp45I	GTSAC	4 cut(s)	107, 445, 460, 775
TspDTI	ATGAA	2 cut(s)	653, 894
TspRI	CASTG	1 cut(s)	1142
Tth111I	GACNNNGTC	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	833
XapI	RAATTY	3 cut(s)	226, 302, 600
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	3 cut(s)	174, 281, 833
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.