Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Forward (+)

17464493 .. 17465348

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAACTTCCCAGAATAGAGAACCGTCGAAGAAGGCGATAAAAAGCCCTGGGGGTTCTGGTAGCTCTCAAGGCAAAACTAATTCGAGTGGCCAAACTGTTAAGTTTGCGCGAAGGACTTCAAGTGGACGGTATGTGAGTCTGTCAAGAGAAGACCTTGATATGTCCGGGGAATTATCTGGGGACTATATGAACTACACAGTTCATATTCCACCCACCCCGGATAACCAGCCCATGGACACATCCGTGGCTGTCAAGGCAGAGGAGCAATATGTTTCGAATTCTTTATTTACCGGAGGGTTCAATAGCGTGACACGTGCACATCTCATGGATAAGGTGATTGATTCGGAGGTGAGTCATCCTCAGATGGCTGGAGCCAAAGGCTCTGCATGCATGATGCCTGCTTGTGATGGTAAGGTGATGAAGGATGAGAGAGGAGTTGATATAACCCCTTGTGATTGCAGGTTTAAAATCTGCAGAGATTGCTATTTGGATGCACAGAAGGACACTGGCCTTTGTCCAGGCTGCAAGGAGCAATACAGAGTAGGAGACGAATATGATGAGCCATCGGATTACAACAGTGGAACGCTGCAATTGCCTGGTCCTGACGGAAAAAGGGATAACATGTCTGTGATGAAGAGGAACCAAACGGGAGAATTTAACGATCGATCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

226

Amino Acids

24.57

Weight (kDa)

5.69

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccII	CGCG	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	280, 656
AcvI	CACGTG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	2 cut(s)	314, 624
AgsI	TTSAA	2 cut(s)	123, 304
AjnI	CCWGG	3 cut(s)	49, 520, 598
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	543
Alw44I	GTGCAC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	91, 511
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	525, 589
ApoI	RAATTY	2 cut(s)	280, 656
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	2 cut(s)	169, 221
AsuHPI	GGTGA	3 cut(s)	349, 364, 430
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	512, 576
BccI	CCATC	3 cut(s)	361, 404, 574
BciT130I	CCWGG	3 cut(s)	51, 522, 600
BcnI	CCSGG	2 cut(s)	169, 221
BcoDI	GTCTC	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	2 cut(s)	526, 590
BlsI	GCNGC	2 cut(s)	527, 591
Bme1390I	CCNGG	5 cut(s)	51, 169, 221, 522, 600
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	376, 644
BmrFI	CCNGG	5 cut(s)	51, 169, 221, 522, 600
BmsI	GCATC	2 cut(s)	387, 484
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	169, 221
Bsa29I	ATCGAT	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	6 cut(s)	49, 50, 168, 219, 234, 246
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	3 cut(s)	51, 522, 600
BseCI	ATCGAT	1 cut(s)	667
BseDI	CCNNGG	6 cut(s)	49, 50, 168, 219, 234, 246
BseGI	GGATG	4 cut(s)	242, 358, 433, 499
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	2 cut(s)	278, 450
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	512, 576
Bsh1236I	CGCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	93, 513
BshVI	ATCGAT	1 cut(s)	667
BsiEI	CGRYCG	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	168, 221, 294
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	93, 513
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	664, 668
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	2 cut(s)	93, 513
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	376, 644
BspMAI	CTGCAG	1 cut(s)	479
BspMI	ACCTGC	1 cut(s)	453
BspT104I	TTCGAA	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	6 cut(s)	49, 50, 168, 219, 234, 246
BssMI	GATC	2 cut(s)	664, 668
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	51, 522, 600
Bst4CI	ACNGT	5 cut(s)	27, 100, 132, 202, 581
Bst6I	CTCTTC	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	391, 402
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	2 cut(s)	234, 246
BstF5I	GGATG	4 cut(s)	242, 358, 433, 499
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	667, 671
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	664, 668
BstMCI	CGRYCG	1 cut(s)	667
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 257, 390, 483, 595
BstNI	CCWGG	3 cut(s)	51, 522, 600
BstNSI	RCATGY	2 cut(s)	393, 628
BstSCI	CCNGG	5 cut(s)	49, 167, 219, 520, 598
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	512, 576
BstV2I	GAAGAC	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	93, 513
BsuTUI	ATCGAT	1 cut(s)	667
BtgI	CCRYGG	2 cut(s)	234, 246
BtsCI	GGATG	4 cut(s)	242, 358, 433, 499
BtsIMutI	CAGTG	2 cut(s)	507, 586
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	391, 402
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	667
CviAII	CATG	5 cut(s)	235, 328, 390, 394, 625
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	666, 670
DpnII	GATC	2 cut(s)	664, 668
DraI	TTTAAA	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	49, 520, 598
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	5 cut(s)	238, 331, 393, 397, 628
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	5 cut(s)	234, 327, 389, 393, 624
Fnu4HI	GCNGC	2 cut(s)	526, 590
FokI	GGATG	4 cut(s)	229, 345, 440, 506
Fsp4HI	GCNGC	2 cut(s)	526, 590
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	526, 590
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	93, 513
HapII	CCGG	3 cut(s)	168, 221, 294
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	238, 331, 393, 397, 628
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	3 cut(s)	139, 344, 355
HpaII	CCGG	3 cut(s)	168, 221, 294
HphI	GGTGA	3 cut(s)	349, 364, 430
Hpy166II	GTNNAC	2 cut(s)	128, 320
Hpy188I	TCNGA	3 cut(s)	349, 366, 571
Hpy188III	TCNNGA	2 cut(s)	147, 605
Hpy8I	GTNNAC	2 cut(s)	128, 320
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	4 cut(s)	28, 108, 418, 496
HpyCH4III	ACNGT	5 cut(s)	27, 100, 132, 202, 581
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	8 cut(s)	320, 389, 393, 462, 477, 497, 528, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 257, 390, 483, 595
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	238, 331, 393, 397, 628
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	664, 668
LmnI	GCTCC	3 cut(s)	265, 374, 532
Lsp1109I	GCAGC	2 cut(s)	512, 576
LweI	GCATC	2 cut(s)	387, 484
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	2 cut(s)	666, 670
MboI	GATC	2 cut(s)	664, 668
MboII	GAAGA	3 cut(s)	43, 164, 649
MfeI	CAATTG	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	5 cut(s)	82, 173, 280, 593, 656
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	148, 364
MnlI	CCTC	6 cut(s)	256, 290, 343, 372, 428, 633
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	3 cut(s)	102, 468, 660
MslI	CAYNNNNRTG	2 cut(s)	245, 629
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	3 cut(s)	168, 221, 294
MspR9I	CCNGG	5 cut(s)	51, 169, 221, 522, 600
MunI	CAATTG	1 cut(s)	593
MvaI	CCWGG	3 cut(s)	51, 522, 600
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	72, 257, 390, 483, 595
NciI	CCSGG	2 cut(s)	169, 221
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	664, 668
NlaIII	CATG	5 cut(s)	238, 331, 393, 397, 628
NlaIV	GGNNCC	2 cut(s)	376, 644
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	2 cut(s)	393, 628
NspV	TTCGAA	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	393
PasI	CCCWGGG	1 cut(s)	50
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	527, 591
Ple19I	CGATCG	1 cut(s)	667
PleI	GAGTC	2 cut(s)	147, 363
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
PpsI	GAGTC	2 cut(s)	147, 363
Ppu21I	YACGTR	1 cut(s)	317
PscI	ACATGT	1 cut(s)	624
Psp6I	CCWGG	3 cut(s)	49, 520, 598
PspCI	CACGTG	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	49, 520, 598
PspN4I	GGNNCC	2 cut(s)	376, 644
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	667
RseI	CAYNNNNRTG	2 cut(s)	245, 629
SaqAI	TTAA	3 cut(s)	102, 468, 660
SatI	GCNGC	2 cut(s)	526, 590
Sau3AI	GATC	2 cut(s)	664, 668
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	148, 364
ScrFI	CCNGG	5 cut(s)	51, 169, 221, 522, 600
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	7 cut(s)	68, 159, 319, 339, 354, 420, 467
SfaNI	GCATC	2 cut(s)	387, 484
SfcI	CTRYAG	1 cut(s)	475
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	245, 629
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	5 cut(s)	82, 173, 280, 593, 656
StyD4I	CCNGG	5 cut(s)	49, 167, 219, 520, 598
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	5 cut(s)	27, 100, 132, 202, 581
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	29, 86, 278, 667
TasI	AATT	5 cut(s)	82, 173, 280, 593, 656
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	102, 468, 660
Tru9I	TTAA	3 cut(s)	102, 468, 660
TscAI	CASTG	2 cut(s)	514, 586
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	525, 589
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	194, 206, 437, 650
TspGWI	ACGGA	2 cut(s)	235, 624
TspRI	CASTG	2 cut(s)	514, 586
Van91I	CCANNNNNTGG	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	2 cut(s)	280, 656
XceI	RCATGY	2 cut(s)	393, 628
XmnI	GAANNNNTTC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.