Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Reverse (-)

20031013 .. 20031895

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATCTTCCGTCAGCAGCTTCGAAGATTTCGAATTCTTGCAATTCGAAGACTCCGATCAAGACTCCCTCTGGGAATTCGTCGACCTCTCCGACGCCGGCTCCGACGACAACCACCCCCACCCCAACTCCGACTCCGAACCACCACACCCCTCCGAGCCCATTGGGCCCGTCACTTCATTAGACTCCCCAATCGCTTCGCCCGTCGCCGACCCGATCCGAGCCCACACCCGCCGTCGCCAGACCCGTCTCGTTCGCCTTCTCGATCTTCCCTTCCAGACCCCCCTCAATTTCGACGACCGCCGTGGCCATGAGGACGATGACGTCGGCGGCGACGAGGAGGACGTCGACGGGTACGGCCTTGATGACGAGCTGGTGCCGTGGTCGGTGAGCGACAAGTTTGGGCGGGAGAGGATGAGGAAATTGGGGAAGAGGACATTTGCGAAGATGCAGAATTCGAAGAGGTCGCCCTACTTGGTTATCAGGCCTGGCTGCGTTCGCGGCAAGCATGGCCTGGGCTTGAAGCACATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

4.92

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	2 cut(s)	327, 348
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	2 cut(s)	84, 348
AccII	CGCG	1 cut(s)	501
AciI	CCGC	5 cut(s)	232, 301, 330, 406, 501
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	35, 77, 454
AcyI	GRCGYC	3 cut(s)	96, 324, 345
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	487, 513
AluBI	AGCT	2 cut(s)	21, 373
AluI	AGCT	2 cut(s)	21, 373
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	5 cut(s)	167, 307, 358, 485, 511
ApaI	GGGCCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	18, 492
ApoI	RAATTY	3 cut(s)	35, 77, 454
AspS9I	GGNCC	2 cut(s)	167, 168
AsuHPI	GGTGA	1 cut(s)	400
AsuII	TTCGAA	4 cut(s)	24, 33, 48, 458
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	3 cut(s)	162, 171, 226
BarI	GAAGNNNNNNTAC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	30, 479
BceAI	ACGGC	4 cut(s)	219, 288, 364, 373
BciT130I	CCWGG	2 cut(s)	489, 515
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	4 cut(s)	19, 331, 493, 502
BlsI	GCNGC	4 cut(s)	20, 332, 494, 503
Bme1390I	CCNGG	2 cut(s)	489, 515
BmgT120I	GGNCC	2 cut(s)	167, 168
BmiI	GGNNCC	3 cut(s)	103, 169, 378
BmrFI	CCNGG	2 cut(s)	489, 515
BmsI	GCATC	2 cut(s)	14, 438
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	4 cut(s)	24, 33, 48, 458
BsaHI	GRCGYC	3 cut(s)	96, 324, 345
BsaJI	CCNNGG	3 cut(s)	304, 380, 514
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 113, 116, 119, 143, 149
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	489, 515
BseDI	CCNNGG	3 cut(s)	304, 380, 514
BseGI	GGATG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	30, 479
Bsh1236I	CGCG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	169, 309, 360, 487, 513
BshNI	GGYRCC	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	169, 309, 360, 487, 513
Bsp119I	TTCGAA	4 cut(s)	24, 33, 48, 458
Bsp120I	GGGCCC	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	162, 171, 226
Bsp143I	GATC	3 cut(s)	58, 216, 265
BspACI	CCGC	5 cut(s)	232, 301, 330, 406, 501
BspANI	GGCC	5 cut(s)	169, 309, 360, 487, 513
BspFNI	CGCG	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	103, 169, 378
BspPI	GGATC	1 cut(s)	211
BspT104I	TTCGAA	4 cut(s)	24, 33, 48, 458
BspT107I	GGYRCC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	304, 380, 514
BssMI	GATC	3 cut(s)	58, 216, 265
BssNI	GRCGYC	3 cut(s)	96, 324, 345
Bst2UI	CCWGG	2 cut(s)	489, 515
Bst6I	CTCTTC	2 cut(s)	425, 455
BstACI	GRCGYC	3 cut(s)	96, 324, 345
BstBI	TTCGAA	4 cut(s)	24, 33, 48, 458
BstC8I	GCNNGC	2 cut(s)	100, 506
BstDSI	CCRYGG	2 cut(s)	304, 380
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	3 cut(s)	61, 219, 268
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	58, 216, 265
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 498, 501, 510
BstNI	CCWGG	2 cut(s)	489, 515
BstSCI	CCNGG	2 cut(s)	487, 513
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	30, 479
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	169, 309, 360, 487, 513
BtgI	CCRYGG	2 cut(s)	304, 380
BtsCI	GGATG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	100, 506
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	167, 168
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	311, 509
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	3 cut(s)	60, 218, 267
DpnII	GATC	3 cut(s)	58, 216, 265
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	425, 455
EarI	CTCTTC	2 cut(s)	425, 455
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	3 cut(s)	162, 171, 226
EcoRI	GAATTC	3 cut(s)	35, 77, 454
EcoRII	CCWGG	2 cut(s)	487, 513
EcoT38I	GRGCYC	3 cut(s)	162, 171, 226
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	2 cut(s)	314, 512
FaiI	YATR	2 cut(s)	312, 510
FatI	CATG	2 cut(s)	310, 508
FauI	CCCGC	2 cut(s)	239, 399
FblI	GTMKAC	2 cut(s)	84, 348
Fnu4HI	GCNGC	4 cut(s)	19, 331, 493, 502
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	3 cut(s)	162, 171, 226
Fsp4HI	GCNGC	4 cut(s)	19, 331, 493, 502
FspBI	CTAG	1 cut(s)	535
GluI	GCNGC	4 cut(s)	19, 331, 493, 502
HaeIII	GGCC	5 cut(s)	169, 309, 360, 487, 513
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	3 cut(s)	96, 324, 345
Hin1II	CATG	2 cut(s)	314, 512
HincII	GTYRAC	2 cut(s)	85, 349
HindII	GTYRAC	2 cut(s)	85, 349
HinfI	GANTC	4 cut(s)	53, 65, 134, 185
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	85, 349
Hpy188I	TCNGA	7 cut(s)	58, 94, 106, 133, 139, 157, 221
Hpy188III	TCNNGA	3 cut(s)	62, 263, 277
Hpy8I	GTNNAC	2 cut(s)	85, 349
HpyAV	CCTTC	2 cut(s)	269, 283
HpyCH4IV	ACGT	2 cut(s)	324, 345
HpyCH4V	TGCA	2 cut(s)	43, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 498, 501, 510
HpySE526I	ACGT	2 cut(s)	324, 345
Hsp92I	GRCGYC	3 cut(s)	96, 324, 345
Hsp92II	CATG	2 cut(s)	314, 512
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	58, 216, 265
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	30, 479
LweI	GCATC	2 cut(s)	14, 438
MaeI	CTAG	1 cut(s)	535
MaeII	ACGT	2 cut(s)	324, 345
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	60, 218, 267
MboI	GATC	3 cut(s)	58, 216, 265
MboII	GAAGA	6 cut(s)	38, 62, 260, 442, 457, 472
MhlI	GDGCHC	3 cut(s)	162, 171, 226
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	35, 44, 77, 289, 422, 454
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	4 cut(s)	47, 59, 128, 179
MmeI	TCCRAC	3 cut(s)	117, 129, 156
Mox20I	TGGCCA	1 cut(s)	309
MroNI	GCCGGC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	489, 515
MvaI	CCWGG	2 cut(s)	489, 515
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	166, 498, 501, 510
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	3 cut(s)	58, 216, 265
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	314, 512
NlaIV	GGNNCC	3 cut(s)	103, 169, 378
NmuCI	GTSAC	1 cut(s)	172
NspV	TTCGAA	4 cut(s)	24, 33, 48, 458
PceI	AGGCCT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	9 cut(s)	30, 54, 90, 102, 201, 244, 330, 333, 342
PdiI	GCCGGC	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	20, 332, 494, 503
PleI	GAGTC	4 cut(s)	47, 59, 128, 179
PpsI	GAGTC	4 cut(s)	47, 59, 128, 179
Psp6I	CCWGG	2 cut(s)	487, 513
PspGI	CCWGG	2 cut(s)	487, 513
PspN4I	GGNNCC	3 cut(s)	103, 169, 378
PspOMI	GGGCCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	167, 168
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	2 cut(s)	83, 347
SatI	GCNGC	4 cut(s)	19, 331, 493, 502
Sau3AI	GATC	3 cut(s)	58, 216, 265
Sau96I	GGNCC	2 cut(s)	167, 168
SchI	GAGTC	4 cut(s)	47, 59, 128, 179
ScrFI	CCNGG	2 cut(s)	489, 515
SduI	GDGCHC	3 cut(s)	162, 171, 226
SetI	ASST	6 cut(s)	23, 90, 327, 348, 375, 467
SfaNI	GCATC	2 cut(s)	14, 438
SfuI	TTCGAA	4 cut(s)	24, 33, 48, 458
SgrDI	CGTCGACG	1 cut(s)	347
Sse9I	AATT	6 cut(s)	35, 44, 77, 289, 422, 454
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	5 cut(s)	232, 301, 330, 406, 501
SspMI	CTAG	1 cut(s)	535
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	487, 513
TaiI	ACGT	2 cut(s)	327, 348
TaqI	TCGA	8 cut(s)	24, 33, 48, 84, 264, 294, 348, 458
TasI	AATT	6 cut(s)	35, 44, 77, 289, 422, 454
TauI	GCSGC	2 cut(s)	333, 504
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	18, 492
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	168
XapI	RAATTY	3 cut(s)	35, 77, 454
XmiI	GTMKAC	2 cut(s)	84, 348
XspI	CTAG	1 cut(s)	535
ZraI	GACGTC	2 cut(s)	325, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.