Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Reverse (-)

20050215 .. 20056298

Gene Structure 6084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTCCTCTTCCTCTTCCTCCTTCTCTCTTTCTCTGCCCCTACAACCTCCTCGACGCTCTTATCACCGACACCCGGTACATTGCTTTGGCATAAACTTTTCTTTGCTAAAGAATTGGGATGTTATGGTCTCGGGGATGTGGAGGCCGAGGCCATTCCGTTCGGCCAATTTGATGGACTGTAGGAAGAGGAGAACTTTGATCTATGCAGTCAATCAAGATGCTGAGGAAGCATTCAAAAAGACTGTAGAAGTCGATAGGCTGATAGAAAAATTGAGGGATGCAAATCCAATTGAACTTCAGAAGCTTGTTGTTGAAAATGTGTTGGCATTTAACGAGGGCTTTTGGATACGGCTTGCAGCAAGAACTGATACCTGCAAATCAGAAGATGATAAAAAAGATTATGAGGAATTGGCTATATCAGTAATGAGCATAGTGGATCGCCTTGTTCACAAGACCAATGAAAAGATAAATTCAGCTACTGATGTCCTCAAGGGGATTCTGAAACCTATAGTTGATGATGTTGTAGAAATTCAGTGGCCTCCTAGAGATCCTGAGTCTCTTAAATTAATGGAGAAAGAAATCACTGAAAGGGAACAAGAAGGGCTACTGGATGAAGGCTTCCTTTCAGAAGTTAATGCTCAACTAAGACAAGCAAAAGAAGATGGAGATAAGCCAGGGCTTGAGGCTATGTTACAAAAGGTTTTGCAACTCTACGCTTCTAAAGTTCTATCCAAACGTAGTTATGCAAAGAAAGGGGATGAAATTCTGAAGGCCGAGGAGTTTCTTGAAACCATAATTAAAGCTCCTGAGGAAGAATGGAACAAGCTGTTGCTCGATGGATTGTCAATTGGCAAAGGTGAAATTCCACCACAGGACCTCTATGCTGTCATAAAGAAAAGGATTGAACGGACTCTGATCCGAACGGAGGGTGGTTCTTACCAGCAGCGTGTTCTTTCTGAGTATCTGAACGGCATTCAATCGAGAGCAGAGCAAGTTGTCCAAGTGCTAGAGGGCAAGGCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

342

Amino Acids

39.12

Weight (kDa)

6.01

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AclWI	GGATC	3 cut(s)	447, 545, 913
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	472, 531, 765, 864
AcuI	CTGAAG	2 cut(s)	284, 791
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	76, 928
AgsI	TTSAA	6 cut(s)	238, 296, 317, 791, 908, 980
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	4 cut(s)	307, 479, 806, 829
AluI	AGCT	4 cut(s)	307, 479, 806, 829
Alw26I	GTCTC	2 cut(s)	136, 564
AlwI	GGATC	3 cut(s)	447, 545, 913
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	5 cut(s)	146, 152, 165, 539, 774
ApeKI	GCWGC	2 cut(s)	359, 946
ApoI	RAATTY	4 cut(s)	472, 531, 765, 864
AseI	ATTAAT	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	877
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	59, 872
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	877
AxyI	CCTNAGG	1 cut(s)	810
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	371, 958
BccI	CCATC	3 cut(s)	169, 659, 833
BceAI	ACGGC	2 cut(s)	368, 988
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	136, 564
BfaI	CTAG	2 cut(s)	546, 1010
BfmI	CTRYAG	3 cut(s)	181, 246, 510
BfuAI	ACCTGC	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	360, 947
BlsI	GCNGC	2 cut(s)	361, 948
Bme1390I	CCNGG	2 cut(s)	77, 678
Bme18I	GGWCC	1 cut(s)	877
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	877
BmrFI	CCNGG	2 cut(s)	77, 678
BmsI	GCATC	2 cut(s)	211, 271
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	476, 704
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	149, 677, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 928
Bse1I	ACTGG	1 cut(s)	615
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	149, 677, 777
BseGI	GGATG	5 cut(s)	127, 144, 286, 619, 766
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	76, 928
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	4 cut(s)	216, 546, 801, 951
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	3 cut(s)	42, 205, 794
BseXI	GCAGC	2 cut(s)	371, 958
BshFI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	76, 928
BsmAI	GTCTC	2 cut(s)	136, 564
BsmI	GAATGC	2 cut(s)	233, 975
BsnI	GGCC	5 cut(s)	148, 154, 167, 541, 776
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	201, 439, 550, 918
BspANI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BspCNI	CTCAG	4 cut(s)	217, 547, 802, 952
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	3 cut(s)	447, 545, 913
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	3 cut(s)	149, 677, 777
BssMI	GATC	4 cut(s)	201, 439, 550, 918
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	182, 247
Bst6I	CTCTTC	3 cut(s)	16, 22, 182
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	6 cut(s)	225, 555, 647, 810, 960, 1023
BstF5I	GGATG	5 cut(s)	127, 144, 286, 619, 766
BstKTI	GATC	4 cut(s)	204, 442, 553, 921
BstMAI	GTCTC	2 cut(s)	136, 564
BstMBI	GATC	4 cut(s)	201, 439, 550, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	75, 676
BstSFI	CTRYAG	3 cut(s)	181, 246, 510
BstV1I	GCAGC	2 cut(s)	371, 958
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	810
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	5 cut(s)	148, 154, 167, 541, 776
BtsCI	GGATG	5 cut(s)	127, 144, 286, 619, 766
BtsIMutI	CAGTG	2 cut(s)	542, 585
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	877
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	80
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	6 cut(s)	225, 555, 647, 810, 960, 1023
DpnI	GATC	4 cut(s)	203, 441, 552, 920
DpnII	GATC	4 cut(s)	201, 439, 550, 918
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	16, 22, 182
EarI	CTCTTC	3 cut(s)	16, 22, 182
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	284, 791
Eco81I	CCTNAGG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	676
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
Fnu4HI	GCNGC	2 cut(s)	360, 947
FokI	GGATG	5 cut(s)	134, 151, 293, 626, 773
Fsp4HI	GCNGC	2 cut(s)	360, 947
FspBI	CTAG	2 cut(s)	546, 1010
GluI	GCNGC	2 cut(s)	360, 947
HaeIII	GGCC	5 cut(s)	148, 154, 167, 541, 776
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	499, 557, 913
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	59, 872
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	9 cut(s)	303, 385, 504, 631, 771, 918, 923, 961, 969
Hpy188III	TCNNGA	5 cut(s)	218, 554, 788, 809, 984
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	4 cut(s)	34, 596, 611, 766
HpyCH4III	ACNGT	2 cut(s)	182, 247
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	6 cut(s)	209, 284, 359, 378, 709, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	6 cut(s)	225, 555, 647, 810, 960, 1023
HpySE526I	ACGT	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	201, 439, 550, 918
LmnI	GCTCC	1 cut(s)	811
LpnPI	CCDG	9 cut(s)	90, 388, 567, 596, 663, 690, 822, 860, 956
Lsp1109I	GCAGC	2 cut(s)	371, 958
LweI	GCATC	2 cut(s)	211, 271
MaeI	CTAG	2 cut(s)	546, 1010
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	4 cut(s)	203, 441, 552, 920
MboI	GATC	4 cut(s)	201, 439, 550, 918
MboII	GAAGA	6 cut(s)	3, 9, 199, 398, 674, 827
MfeI	CAATTG	2 cut(s)	291, 849
MflI	RGATCY	1 cut(s)	550
MlyI	GAGTC	2 cut(s)	566, 907
MseI	TTAA	5 cut(s)	333, 564, 569, 636, 801
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	77, 678
MunI	CAATTG	2 cut(s)	291, 849
Mva1269I	GAATGC	2 cut(s)	233, 975
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	201, 439, 550, 918
NmeAIII	GCCGAG	2 cut(s)	174, 802
PctI	GAATGC	2 cut(s)	233, 975
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	361, 948
PleI	GAGTC	2 cut(s)	565, 907
PpsI	GAGTC	2 cut(s)	565, 907
PpuMI	RGGWCCY	1 cut(s)	877
PshBI	ATTAAT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	877
PspPPI	RGGWCCY	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	333, 564, 569, 636, 801
SatI	GCNGC	2 cut(s)	360, 947
Sau3AI	GATC	4 cut(s)	201, 439, 550, 918
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	2 cut(s)	566, 907
ScrFI	CCNGG	2 cut(s)	77, 678
SfaNI	GCATC	2 cut(s)	211, 271
SfcI	CTRYAG	3 cut(s)	181, 246, 510
SinI	GGWCC	1 cut(s)	877
SmlI	CTYRAG	2 cut(s)	491, 683
SmoI	CTYRAG	2 cut(s)	491, 683
SspMI	CTAG	2 cut(s)	546, 1010
StyD4I	CCNGG	2 cut(s)	75, 676
TaaI	ACNGT	2 cut(s)	182, 247
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	4 cut(s)	55, 255, 837, 983
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	5 cut(s)	333, 564, 569, 636, 801
Tru9I	TTAA	5 cut(s)	333, 564, 569, 636, 801
TscAI	CASTG	2 cut(s)	542, 592
TseI	GCWGC	2 cut(s)	359, 946
TspDTI	ATGAA	3 cut(s)	477, 630, 777
TspGWI	ACGGA	3 cut(s)	149, 925, 941
TspRI	CASTG	2 cut(s)	542, 592
VpaK11BI	GGWCC	1 cut(s)	877
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	4 cut(s)	472, 531, 765, 864
XspI	CTAG	2 cut(s)	546, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.