Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Forward (+)

17420437 .. 17421318

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCACAACCGAGGATGGCGTTCGGTGTACTGCGTTACCAAGCGTGATGCATTTCGAGGATCAGCGTCCATTAATCTCACTGATCGACTCCACCAAGTACTCCGTTGGGCAACAGGCTCTGTCGAAATTTTCTACTCTCGGAACAATGCCTTCCTCGCCTCATTGCGCCTCAAGTTCCTACAGCGTATTGCCTACATCAATCTCGGTGTCTACCCTTTCACCTCGATCTTTCTCATCGTGTACTGCTTCCTGCCAGCGCTCTGTCTCTTCACAGGACAGTTCATCGTGGCGAATCTCAGCATCACGTTTTTGATCTACTTGCTAATCATCACCATATGCCTCATTGCTCTGGCCATCCTGGAGGTGAAGTGGTCAGGGATCGAGTTGGAAGAGTGGTGGCGAAACGAGCAGTTTTGGCTCATCTCCGGAACCAGCTCTCACTTGGCTGCGGTTGTGGCAGGGCTTCTAAAAGTGATGGGAGGGATTGAAATTTACTCTACCTCGACGTCCAAGCCAGCTGGAGAGGACAACGATGATATATATGCTGACCTCTACCTTGTGAAGTGGACTTCCCTCATGATCCCTCCAATTGTGATTGGAATGGTGAACCTAATCGCCATTGCCGTCGCGATTTCAAGGGAGATTTATGCTCTGAATCCTCAGTGGGCGAAGCTGATCCGCGGTGTGTTCTTCAGCTTTTGGGTTTTGGCTCACTTGTATCCTTTTGCCAACGGCTTAATGGGAAGAAGAGGGAAGACGCCTACCATTGTGTTTGTTTGGTCAGGTCTCATTGCCATTACACTTTCCTTGCTCTGGGTCGCCATTAACCCGCCAGCTCCTGGTGCTGCTGGCGTTGCAGGAGCTGGGTTCCAATTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

294

Amino Acids

32.69

Weight (kDa)

9.32

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 279	1.4e-142	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	629, 681
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	4 cut(s)	449, 679, 681, 830
AclWI	GGATC	4 cut(s)	67, 386, 574, 670
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	126, 489
AcuI	CTGAAG	1 cut(s)	676
AcyI	GRCGYC	2 cut(s)	506, 758
AfaI	GTAC	3 cut(s)	29, 99, 242
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	813, 839
AgsI	TTSAA	2 cut(s)	488, 636
AjnI	CCWGG	2 cut(s)	357, 838
AluBI	AGCT	6 cut(s)	435, 518, 673, 696, 836, 863
AluI	AGCT	6 cut(s)	435, 518, 673, 696, 836, 863
Alw26I	GTCTC	2 cut(s)	269, 791
AlwI	GGATC	4 cut(s)	67, 386, 574, 670
AlwNI	CAGNNNCTG	3 cut(s)	119, 839, 863
Aor13HI	TCCGGA	1 cut(s)	425
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	446, 845
ApoI	RAATTY	2 cut(s)	126, 489
AseI	ATTAAT	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	168, 259
AsuHPI	GGTGA	4 cut(s)	211, 322, 376, 616
BalI	TGGCCA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	433, 832
BccI	CCATC	3 cut(s)	9, 362, 469
BceAI	ACGGC	2 cut(s)	608, 748
BciT130I	CCWGG	2 cut(s)	359, 840
BciVI	GTATCC	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	269, 791
BfmI	CTRYAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	2 cut(s)	447, 846
BlsI	GCNGC	2 cut(s)	448, 847
BmcAI	AGTACT	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	359, 840
BmiI	GGNNCC	2 cut(s)	430, 869
BmrFI	CCNGG	2 cut(s)	359, 840
BmsI	GCATC	2 cut(s)	37, 309
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	2 cut(s)	380, 540
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	506, 758
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	10, 679
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	813, 839
Bse3DI	GCAATG	4 cut(s)	161, 342, 618, 789
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	359, 840
BseDI	CCNNGG	2 cut(s)	10, 679
BseGI	GGATG	2 cut(s)	20, 354
BseLI	CCNNNNNNNGG	2 cut(s)	813, 839
BseMI	GCAATG	4 cut(s)	161, 342, 618, 789
BseMII	CTCAG	2 cut(s)	310, 674
BseXI	GCAGC	2 cut(s)	433, 832
BseYI	CCCAGC	1 cut(s)	863
Bsh1236I	CGCG	2 cut(s)	629, 681
BshFI	GGCC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	813, 839
BsmAI	GTCTC	2 cut(s)	269, 791
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	791
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
Bsp68I	TCGCGA	1 cut(s)	629
BspACI	CCGC	4 cut(s)	449, 679, 681, 830
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	309, 673
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	2 cut(s)	629, 681
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	430, 869
BspPI	GGATC	4 cut(s)	67, 386, 574, 670
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	4 cut(s)	161, 342, 618, 789
BssECI	CCNNGG	2 cut(s)	10, 679
BssMI	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
BssNI	GRCGYC	2 cut(s)	506, 758
Bst2UI	CCWGG	2 cut(s)	359, 840
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	3 cut(s)	272, 384, 742
BstACI	GRCGYC	2 cut(s)	506, 758
BstC8I	GCNNGC	4 cut(s)	255, 516, 834, 850
BstDEI	CTNAG	2 cut(s)	296, 660
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	2 cut(s)	20, 354
BstFNI	CGCG	2 cut(s)	629, 681
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	168, 259
BstKTI	GATC	7 cut(s)	62, 85, 228, 315, 381, 582, 678
BstMAI	GTCTC	2 cut(s)	269, 791
BstMBI	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 406, 415, 455, 842, 854
BstNI	CCWGG	2 cut(s)	359, 840
BstSCI	CCNGG	2 cut(s)	357, 838
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	2 cut(s)	629, 681
BstV1I	GCAGC	2 cut(s)	433, 832
BstV2I	GAAGAC	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	20, 354
BtsIMutI	CAGTG	2 cut(s)	78, 668
BtuMI	TCGCGA	1 cut(s)	629
Cac8I	GCNNGC	4 cut(s)	255, 516, 834, 850
CaiI	CAGNNNCTG	3 cut(s)	119, 839, 863
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	2 cut(s)	168, 259
Cfr42I	CCGCGG	1 cut(s)	682
CseI	GACGC	2 cut(s)	54, 766
Csp6I	GTAC	3 cut(s)	28, 98, 241
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	3 cut(s)	28, 98, 241
DdeI	CTNAG	2 cut(s)	296, 660
DpnI	GATC	7 cut(s)	61, 84, 227, 314, 380, 581, 677
DpnII	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	272, 384, 742
EarI	CTCTTC	3 cut(s)	272, 384, 742
Eco31I	GGTCTC	1 cut(s)	791
Eco47III	AGCGCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	357, 838
EcoT22I	ATGCAT	1 cut(s)	52
FaeI	CATG	1 cut(s)	580
FaiI	YATR	7 cut(s)	335, 337, 539, 541, 543, 578, 648
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	1 cut(s)	335
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	447, 846
FokI	GGATG	2 cut(s)	27, 341
Fsp4HI	GCNGC	2 cut(s)	447, 846
GlaI	GCGC	2 cut(s)	167, 258
GluI	GCNGC	2 cut(s)	447, 846
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	2 cut(s)	380, 540
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	2 cut(s)	54, 766
HhaI	GCGC	2 cut(s)	168, 259
Hin1I	GRCGYC	2 cut(s)	506, 758
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	2 cut(s)	166, 257
HinP1I	GCGC	2 cut(s)	166, 257
HinfI	GANTC	3 cut(s)	87, 292, 655
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	4 cut(s)	211, 322, 376, 616
Hpy166II	GTNNAC	5 cut(s)	28, 211, 241, 567, 607
Hpy188I	TCNGA	2 cut(s)	141, 654
Hpy188III	TCNNGA	3 cut(s)	426, 577, 628
Hpy8I	GTNNAC	5 cut(s)	28, 211, 241, 567, 607
Hpy99I	CGWCG	2 cut(s)	508, 629
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	305, 506
HpyCH4V	TGCA	3 cut(s)	4, 50, 857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 406, 415, 455, 842, 854
HpyF3I	CTNAG	2 cut(s)	296, 660
HpySE526I	ACGT	2 cut(s)	305, 506
Hsp92I	GRCGYC	2 cut(s)	506, 758
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	2 cut(s)	166, 257
Kpn2I	TCCGGA	1 cut(s)	425
KspI	CCGCGG	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
LmnI	GCTCC	2 cut(s)	841, 860
Lsp1109I	GCAGC	2 cut(s)	433, 832
LweI	GCATC	2 cut(s)	37, 309
MaeII	ACGT	2 cut(s)	305, 506
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	7 cut(s)	61, 84, 227, 314, 380, 581, 677
MboI	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
MboII	GAAGA	6 cut(s)	259, 401, 682, 756, 759, 766
MfeI	CAATTG	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	4 cut(s)	126, 489, 588, 872
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	366
Mox20I	TGGCCA	1 cut(s)	353
Mph1103I	ATGCAT	1 cut(s)	52
MroI	TCCGGA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	72, 737, 825
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	2 cut(s)	518, 681
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	359, 840
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	2 cut(s)	359, 840
MvnI	CGCG	2 cut(s)	629, 681
MwoI	GCNNNNNNNGC	6 cut(s)	155, 406, 415, 455, 842, 854
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	2 cut(s)	430, 869
NruI	TCGCGA	1 cut(s)	629
NsiI	ATGCAT	1 cut(s)	52
PagI	TCATGA	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	292, 655
PflMI	CCANNNNNTGG	1 cut(s)	839
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	448, 847
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	357, 838
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	2 cut(s)	357, 838
PspN4I	GGNNCC	2 cut(s)	430, 869
PstNI	CAGNNNCTG	3 cut(s)	119, 839, 863
PvuII	CAGCTG	1 cut(s)	518
RruI	TCGCGA	1 cut(s)	629
RsaI	GTAC	3 cut(s)	29, 99, 242
RsaNI	GTAC	3 cut(s)	28, 98, 241
SacII	CCGCGG	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	72, 737, 825
SatI	GCNGC	2 cut(s)	447, 846
Sau3AI	GATC	7 cut(s)	59, 82, 225, 312, 378, 579, 675
ScaI	AGTACT	1 cut(s)	99
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	359, 840
SfaNI	GCATC	2 cut(s)	37, 309
SfcI	CTRYAG	1 cut(s)	179
Sfr303I	CCGCGG	1 cut(s)	682
SgrBI	CCGCGG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	126, 489, 588, 872
SsiI	CCGC	4 cut(s)	449, 679, 681, 830
StyD4I	CCNGG	2 cut(s)	357, 838
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	308, 509
TaqI	TCGA	6 cut(s)	55, 85, 123, 224, 381, 503
TasI	AATT	4 cut(s)	126, 489, 588, 872
TatI	WGTACW	3 cut(s)	27, 97, 240
TfiI	GAWTC	2 cut(s)	292, 655
Tru1I	TTAA	3 cut(s)	72, 737, 825
Tru9I	TTAA	3 cut(s)	72, 737, 825
TscAI	CASTG	2 cut(s)	85, 668
TseI	GCWGC	2 cut(s)	446, 845
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	2 cut(s)	92, 867
TspRI	CASTG	2 cut(s)	85, 668
Van91I	CCANNNNNTGG	1 cut(s)	839
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	2 cut(s)	126, 489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	439, 736
XmiI	GTMKAC	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.