RING/Ubox like zinc-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38190 |
| fragaria_vesca | FvH4_2g17120 |
| malus_domestica | MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1 |
| prunus_persica | Prupe.8G182500_v2.0.a1 |
| pyrus_communis | pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370 |
| rosa_chinensis | RchiOBHm_Chr6g0281541 |
| rosa_laevigata | RLG00000012965 |
| rosa_multiflora | Rmu_sc0012649.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00187020 |
| rosa_rugosa | Rorug06G0141300 Rorug06G0141400 |
| rosa_samantha | Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000 |
| rosa_wichuraiana | Rw6G022040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 576 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3022 |
| Acc36I | ACCTGC | 1 cut(s) | 453 |
| AccB1I | GGYRCC | 3 cut(s) | 1229, 1802, 3374 |
| AccI | GTMKAC | 5 cut(s) | 1019, 1752, 2538, 2721, 2751 |
| AccII | CGCG | 1 cut(s) | 316 |
| AciI | CCGC | 4 cut(s) | 251, 744, 1771, 2095 |
| AclWI | GGATC | 7 cut(s) | 993, 1118, 1442, 1979, 2372, 2897, 3085 |
| AcoI | YGGCCR | 3 cut(s) | 91, 1078, 1772 |
| AcsI | RAATTY | 3 cut(s) | 1644, 2263, 2339 |
| AcuI | CTGAAG | 5 cut(s) | 1321, 1526, 1634, 1682, 2424 |
| AcyI | GRCGYC | 2 cut(s) | 495, 3375 |
| AdeI | CACNNNGTG | 1 cut(s) | 3347 |
| AfaI | GTAC | 5 cut(s) | 2108, 2303, 2432, 2507, 3065 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 807, 975, 1014, 1281, 2091, 2872, 3324 |
| AflIII | ACRYGT | 4 cut(s) | 162, 314, 624, 1755 |
| AgsI | TTSAA | 8 cut(s) | 304, 469, 1031, 1170, 1313, 1345, 1426, 2999 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 272, 304, 1835, 1867 |
| AleI | CACNNNNGTG | 2 cut(s) | 245, 2520 |
| Alw21I | GWGCWC | 4 cut(s) | 322, 2044, 2613, 2950 |
| Alw26I | GTCTC | 6 cut(s) | 280, 677, 2153, 2416, 2448, 3302 |
| AlwI | GGATC | 7 cut(s) | 993, 1118, 1442, 1979, 2372, 2897, 3085 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1262, 2630, 3350 |
| ApeKI | GCWGC | 9 cut(s) | 45, 827, 1262, 1501, 2692, 2957, 3350, 3362, 3365 |
| ApoI | RAATTY | 3 cut(s) | 1644, 2263, 2339 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3033, 3065 |
| AseI | ATTAAT | 1 cut(s) | 2583 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 118 |
| AspLEI | GCGC | 4 cut(s) | 1816, 2679, 2697, 3377 |
| AspS9I | GGNCC | 8 cut(s) | 602, 767, 1285, 1847, 1927, 2060, 2082, 2863 |
| AsuC2I | CCSGG | 2 cut(s) | 295, 3379 |
| AsuII | TTCGAA | 1 cut(s) | 1974 |
| AvaII | GGWCC | 4 cut(s) | 1285, 1927, 2060, 2082 |
| BaeGI | GKGCMC | 1 cut(s) | 1234 |
| BalI | TGGCCA | 1 cut(s) | 93 |
| BanI | GGYRCC | 3 cut(s) | 1229, 1802, 3374 |
| BanII | GRGCYC | 2 cut(s) | 59, 2371 |
| BauI | CACGAG | 1 cut(s) | 2373 |
| BbsI | GAAGAC | 3 cut(s) | 159, 2153, 3272 |
| Bbv12I | GWGCWC | 4 cut(s) | 322, 2044, 2613, 2950 |
| BbvCI | CCTCAGC | 1 cut(s) | 261 |
| BbvI | GCAGC | 9 cut(s) | 57, 839, 1249, 1513, 2704, 2944, 3337, 3349, 3377 |
| BceAI | ACGGC | 6 cut(s) | 1042, 1065, 1163, 1861, 2363, 3317 |
| BciVI | GTATCC | 1 cut(s) | 3240 |
| BclI | TGATCA | 2 cut(s) | 661, 2323 |
| BcnI | CCSGG | 2 cut(s) | 295, 3379 |
| BcoDI | GTCTC | 6 cut(s) | 280, 677, 2153, 2416, 2448, 3302 |
| BfaI | CTAG | 4 cut(s) | 63, 1376, 1671, 2318 |
| BfmI | CTRYAG | 5 cut(s) | 475, 2622, 2690, 3027, 3363 |
| BfoI | RGCGCY | 2 cut(s) | 2698, 3378 |
| BfuAI | ACCTGC | 1 cut(s) | 453 |
| BfuI | GTATCC | 1 cut(s) | 3240 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 54 |
| BmcAI | AGTACT | 1 cut(s) | 2303 |
| Bme18I | GGWCC | 4 cut(s) | 1285, 1927, 2060, 2082 |
| BmgT120I | GGNCC | 8 cut(s) | 602, 767, 1285, 1847, 1927, 2060, 2082, 2863 |
| BmsI | GCATC | 7 cut(s) | 387, 910, 1462, 1647, 1835, 2377, 2502 |
| BpiI | GAAGAC | 3 cut(s) | 159, 2153, 3272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1218, 1250 |
| BpmI | CTGGAG | 5 cut(s) | 393, 672, 794, 2632, 2891 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| Bpu14I | TTCGAA | 1 cut(s) | 1974 |
| BpuEI | CTTGAG | 2 cut(s) | 54, 2666 |
| BpuMI | CCSGG | 2 cut(s) | 295, 3379 |
| Bsa29I | ATCGAT | 1 cut(s) | 342 |
| BsaBI | GATNNNNATC | 2 cut(s) | 486, 660 |
| BsaHI | GRCGYC | 2 cut(s) | 495, 3375 |
| BsaI | GGTCTC | 3 cut(s) | 677, 2448, 3302 |
| BsaWI | WCCGGW | 1 cut(s) | 1189 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2445, 2475, 2864, 2894 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 807, 975, 1014, 1281, 2091, 2872, 3324 |
| Bse118I | RCCGGY | 1 cut(s) | 3353 |
| Bse1I | ACTGG | 8 cut(s) | 87, 514, 655, 777, 1081, 2063, 2788, 2943 |
| Bse3DI | GCAATG | 8 cut(s) | 715, 1257, 2292, 2985, 3117, 3123, 3129, 3300 |
| Bse8I | GATNNNNATC | 2 cut(s) | 486, 660 |
| BseCI | ATCGAT | 1 cut(s) | 342 |
| BseJI | GATNNNNATC | 2 cut(s) | 486, 660 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 807, 975, 1014, 1281, 2091, 2872, 3324 |
| BseMI | GCAATG | 8 cut(s) | 715, 1257, 2292, 2985, 3117, 3123, 3129, 3300 |
| BseMII | CTCAG | 9 cut(s) | 252, 377, 817, 1317, 2148, 2289, 2377, 2547, 3185 |
| BseNI | ACTGG | 8 cut(s) | 87, 514, 655, 777, 1081, 2063, 2788, 2943 |
| BseRI | GAGGAG | 5 cut(s) | 278, 1226, 1477, 2184, 2361 |
| BseSI | GKGCMC | 1 cut(s) | 1234 |
| BseXI | GCAGC | 9 cut(s) | 57, 839, 1249, 1513, 2704, 2944, 3337, 3349, 3377 |
| BseYI | CCCAGC | 1 cut(s) | 823 |
| BsgI | GTGCAG | 1 cut(s) | 2751 |
| Bsh1236I | CGCG | 1 cut(s) | 316 |
| Bsh1285I | CGRYCG | 4 cut(s) | 1019, 1023, 1194, 2311 |
| BshNI | GGYRCC | 3 cut(s) | 1229, 1802, 3374 |
| BshVI | ATCGAT | 1 cut(s) | 342 |
| BsiEI | CGRYCG | 4 cut(s) | 1019, 1023, 1194, 2311 |
| BsiHKAI | GWGCWC | 4 cut(s) | 322, 2044, 2613, 2950 |
| BsiSI | CCGG | 4 cut(s) | 294, 1190, 3354, 3378 |
| BslFI | GGGAC | 6 cut(s) | 197, 1045, 1271, 1538, 1592, 2095 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 807, 975, 1014, 1281, 2091, 2872, 3324 |
| BsmAI | GTCTC | 6 cut(s) | 280, 677, 2153, 2416, 2448, 3302 |
| BsmBI | CGTCTC | 1 cut(s) | 2153 |
| BsmFI | GGGAC | 6 cut(s) | 197, 1045, 1271, 1538, 1592, 2095 |
| BsmI | GAATGC | 2 cut(s) | 464, 1816 |
| Bso31I | GGTCTC | 3 cut(s) | 677, 2448, 3302 |
| Bsp119I | TTCGAA | 1 cut(s) | 1974 |
| Bsp1286I | GDGCHC | 7 cut(s) | 59, 322, 1234, 2044, 2371, 2613, 2950 |
| Bsp19I | CCATGG | 1 cut(s) | 234 |
| BspACI | CCGC | 4 cut(s) | 251, 744, 1771, 2095 |
| BspCNI | CTCAG | 9 cut(s) | 253, 376, 816, 1318, 2149, 2290, 2376, 2546, 3184 |
| BspDI | ATCGAT | 1 cut(s) | 342 |
| BspFNI | CGCG | 1 cut(s) | 316 |
| BspHI | TCATGA | 2 cut(s) | 1920, 3087 |
| BspMAI | CTGCAG | 3 cut(s) | 2694, 3031, 3367 |
| BspMI | ACCTGC | 1 cut(s) | 453 |
| BspPI | GGATC | 7 cut(s) | 993, 1118, 1442, 1979, 2372, 2897, 3085 |
| BspT104I | TTCGAA | 1 cut(s) | 1974 |
| BspT107I | GGYRCC | 3 cut(s) | 1229, 1802, 3374 |
| BspTNI | GGTCTC | 3 cut(s) | 677, 2448, 3302 |
| BsrDI | GCAATG | 8 cut(s) | 715, 1257, 2292, 2985, 3117, 3123, 3129, 3300 |
| BsrFI | RCCGGY | 1 cut(s) | 3353 |
| BsrI | ACTGG | 8 cut(s) | 87, 514, 655, 777, 1081, 2063, 2788, 2943 |
| BssAI | RCCGGY | 1 cut(s) | 3353 |
| BssNI | GRCGYC | 2 cut(s) | 495, 3375 |
| BssSI | CACGAG | 1 cut(s) | 2373 |
| BssT1I | CCWWGG | 6 cut(s) | 234, 687, 791, 1316, 1557, 3240 |
| Bst2BI | CACGAG | 1 cut(s) | 2373 |
| Bst6I | CTCTTC | 4 cut(s) | 632, 2783, 2895, 3253 |
| BstACI | GRCGYC | 2 cut(s) | 495, 3375 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1262, 1271 |
| BstBI | TTCGAA | 1 cut(s) | 1974 |
| BstDSI | CCRYGG | 4 cut(s) | 234, 760, 1930, 2521 |
| BstEII | GGTNACC | 2 cut(s) | 1529, 1631 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2870 |
| BstFNI | CGCG | 1 cut(s) | 316 |
| BstH2I | RGCGCY | 2 cut(s) | 2698, 3378 |
| BstHHI | GCGC | 4 cut(s) | 1816, 2679, 2697, 3377 |
| BstMAI | GTCTC | 6 cut(s) | 280, 677, 2153, 2416, 2448, 3302 |
| BstMCI | CGRYCG | 4 cut(s) | 1019, 1023, 1194, 2311 |
| BstNSI | RCATGY | 6 cut(s) | 166, 393, 628, 1209, 1759, 2038 |
| BstPI | GGTNACC | 2 cut(s) | 1529, 1631 |
| BstSFI | CTRYAG | 5 cut(s) | 475, 2622, 2690, 3027, 3363 |
| BstSLI | GKGCMC | 1 cut(s) | 1234 |
| BstUI | CGCG | 1 cut(s) | 316 |
| BstV1I | GCAGC | 9 cut(s) | 57, 839, 1249, 1513, 2704, 2944, 3337, 3349, 3377 |
| BstV2I | GAAGAC | 3 cut(s) | 159, 2153, 3272 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1570, 2275 |
| Bsu15I | ATCGAT | 1 cut(s) | 342 |
| BsuI | GTATCC | 1 cut(s) | 3240 |
| BsuTUI | ATCGAT | 1 cut(s) | 342 |
| BtgI | CCRYGG | 4 cut(s) | 234, 760, 1930, 2521 |
| BtsI | GCAGTG | 2 cut(s) | 1116, 1149 |
| BveI | ACCTGC | 1 cut(s) | 453 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1262, 2630, 3350 |
| CciI | TCATGA | 2 cut(s) | 1920, 3087 |
| CfoI | GCGC | 4 cut(s) | 1816, 2679, 2697, 3377 |
| Cfr10I | RCCGGY | 1 cut(s) | 3353 |
| Cfr13I | GGNCC | 8 cut(s) | 602, 767, 1285, 1847, 1927, 2060, 2082, 2863 |
| ClaI | ATCGAT | 1 cut(s) | 342 |
| CseI | GACGC | 5 cut(s) | 298, 503, 2170, 2231, 2567 |
| CsiI | ACCWGGT | 1 cut(s) | 3343 |
| Csp6I | GTAC | 5 cut(s) | 2107, 2302, 2431, 2506, 3064 |
| CviQI | GTAC | 5 cut(s) | 2107, 2302, 2431, 2506, 3064 |
| DinI | GGCGCC | 1 cut(s) | 3376 |
| DraIII | CACNNNGTG | 1 cut(s) | 3347 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3022 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3022 |
| EaeI | YGGCCR | 3 cut(s) | 91, 1078, 1772 |
| Eam1104I | CTCTTC | 4 cut(s) | 632, 2783, 2895, 3253 |
| EarI | CTCTTC | 4 cut(s) | 632, 2783, 2895, 3253 |
| Eco130I | CCWWGG | 6 cut(s) | 234, 687, 791, 1316, 1557, 3240 |
| Eco24I | GRGCYC | 2 cut(s) | 59, 2371 |
| Eco31I | GGTCTC | 3 cut(s) | 677, 2448, 3302 |
| Eco47I | GGWCC | 4 cut(s) | 1285, 1927, 2060, 2082 |
| Eco57I | CTGAAG | 5 cut(s) | 1321, 1526, 1634, 1682, 2424 |
| Eco91I | GGTNACC | 2 cut(s) | 1529, 1631 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2870 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1285 |
| EcoO65I | GGTNACC | 2 cut(s) | 1529, 1631 |
| EcoRI | GAATTC | 1 cut(s) | 1644 |
| EcoT14I | CCWWGG | 6 cut(s) | 234, 687, 791, 1316, 1557, 3240 |
| EcoT22I | ATGCAT | 1 cut(s) | 395 |
| EcoT38I | GRGCYC | 2 cut(s) | 59, 2371 |
| EgeI | GGCGCC | 1 cut(s) | 3376 |
| EheI | GGCGCC | 1 cut(s) | 3376 |
| ErhI | CCWWGG | 6 cut(s) | 234, 687, 791, 1316, 1557, 3240 |
| Esp3I | CGTCTC | 1 cut(s) | 2153 |
| FaqI | GGGAC | 6 cut(s) | 197, 1045, 1271, 1538, 1592, 2095 |
| FauNDI | CATATG | 1 cut(s) | 2846 |
| FbaI | TGATCA | 2 cut(s) | 661, 2323 |
| FblI | GTMKAC | 5 cut(s) | 1019, 1752, 2538, 2721, 2751 |
| FokI | GGATG | 9 cut(s) | 13, 345, 440, 794, 1148, 1582, 2313, 2524, 2538 |
| FriOI | GRGCYC | 2 cut(s) | 59, 2371 |
| FspBI | CTAG | 4 cut(s) | 63, 1376, 1671, 2318 |
| GlaI | GCGC | 4 cut(s) | 1815, 2678, 2696, 3376 |
| GsaI | CCCAGC | 1 cut(s) | 827 |
| GsuI | CTGGAG | 5 cut(s) | 393, 672, 794, 2632, 2891 |
| HaeII | RGCGCY | 2 cut(s) | 2698, 3378 |
| HapII | CCGG | 4 cut(s) | 294, 1190, 3354, 3378 |
| HgaI | GACGC | 5 cut(s) | 298, 503, 2170, 2231, 2567 |
| HhaI | GCGC | 4 cut(s) | 1816, 2679, 2697, 3377 |
| Hin1I | GRCGYC | 2 cut(s) | 495, 3375 |
| Hin6I | GCGC | 4 cut(s) | 1814, 2677, 2695, 3375 |
| HinP1I | GCGC | 4 cut(s) | 1814, 2677, 2695, 3375 |
| HincII | GTYRAC | 5 cut(s) | 1020, 1102, 1351, 3118, 3337 |
| HindII | GTYRAC | 5 cut(s) | 1020, 1102, 1351, 3118, 3337 |
| HpaI | GTTAAC | 1 cut(s) | 3337 |
| HpaII | CCGG | 4 cut(s) | 294, 1190, 3354, 3378 |
| Hpy99I | CGWCG | 2 cut(s) | 2225, 2717 |
| HpyCH4IV | ACGT | 1 cut(s) | 2712 |
| HpySE526I | ACGT | 1 cut(s) | 2712 |
| Hsp92I | GRCGYC | 2 cut(s) | 495, 3375 |
| HspAI | GCGC | 4 cut(s) | 1814, 2677, 2695, 3375 |
| KasI | GGCGCC | 1 cut(s) | 3374 |
| KflI | GGGWCCC | 1 cut(s) | 1285 |
| Ksp22I | TGATCA | 2 cut(s) | 661, 2323 |
| KspAI | GTTAAC | 1 cut(s) | 3337 |
| LmnI | GCTCC | 8 cut(s) | 265, 374, 532, 1540, 2374, 2581, 2616, 3194 |
| Lsp1109I | GCAGC | 9 cut(s) | 57, 839, 1249, 1513, 2704, 2944, 3337, 3349, 3377 |
| LweI | GCATC | 7 cut(s) | 387, 910, 1462, 1647, 1835, 2377, 2502 |
| MabI | ACCWGGT | 1 cut(s) | 3343 |
| MaeI | CTAG | 4 cut(s) | 63, 1376, 1671, 2318 |
| MaeII | ACGT | 1 cut(s) | 2712 |
| MaeIII | GTNAC | 8 cut(s) | 310, 352, 1529, 1631, 2482, 2497, 2555, 2685 |
| MfeI | CAATTG | 1 cut(s) | 593 |
| MhlI | GDGCHC | 7 cut(s) | 59, 322, 1234, 2044, 2371, 2613, 2950 |
| MlsI | TGGCCA | 1 cut(s) | 93 |
| MluI | ACGCGT | 1 cut(s) | 314 |
| MluNI | TGGCCA | 1 cut(s) | 93 |
| Mly113I | GGCGCC | 1 cut(s) | 3375 |
| MlyI | GAGTC | 7 cut(s) | 148, 349, 785, 985, 1445, 1673, 2592 |
| MmeI | TCCRAC | 6 cut(s) | 303, 759, 788, 1277, 1866, 2447 |
| Mox20I | TGGCCA | 1 cut(s) | 93 |
| Mph1103I | ATGCAT | 1 cut(s) | 395 |
| MroXI | GAANNNNTTC | 1 cut(s) | 118 |
| MscI | TGGCCA | 1 cut(s) | 93 |
| MseI | TTAA | 3 cut(s) | 102, 2583, 3336 |
| MslI | CAYNNNNRTG | 6 cut(s) | 245, 629, 944, 1568, 1620, 2520 |
| Msp20I | TGGCCA | 1 cut(s) | 93 |
| MspA1I | CMGCKG | 1 cut(s) | 1504 |
| MspI | CCGG | 4 cut(s) | 294, 1190, 3354, 3378 |
| MunI | CAATTG | 1 cut(s) | 593 |
| Mva1269I | GAATGC | 2 cut(s) | 464, 1816 |
| MvnI | CGCG | 1 cut(s) | 316 |
| NarI | GGCGCC | 1 cut(s) | 3375 |
| NciI | CCSGG | 2 cut(s) | 295, 3379 |
| NcoI | CCATGG | 1 cut(s) | 234 |
| NdeI | CATATG | 1 cut(s) | 2846 |
| NmuCI | GTSAC | 7 cut(s) | 310, 352, 1529, 1631, 2482, 2497, 2555 |
| NsiI | ATGCAT | 1 cut(s) | 395 |
| NspI | RCATGY | 6 cut(s) | 166, 393, 628, 1209, 1759, 2038 |
| NspV | TTCGAA | 1 cut(s) | 1974 |
| OliI | CACNNNNGTG | 2 cut(s) | 245, 2520 |
| PaeI | GCATGC | 2 cut(s) | 393, 1209 |
| PagI | TCATGA | 2 cut(s) | 1920, 3087 |
| PasI | CCCWGGG | 1 cut(s) | 50 |
| PciI | ACATGT | 3 cut(s) | 162, 624, 1755 |
| PctI | GAATGC | 2 cut(s) | 464, 1816 |
| PdmI | GAANNNNTTC | 1 cut(s) | 118 |
| PfeI | GAWTC | 8 cut(s) | 300, 344, 563, 907, 979, 1971, 2125, 2282 |
| PflFI | GACNNNGTC | 1 cut(s) | 2185 |
| PfoI | TCCNGGA | 2 cut(s) | 2648, 2868 |
| PleI | GAGTC | 7 cut(s) | 147, 349, 784, 985, 1445, 1673, 2592 |
| PluTI | GGCGCC | 1 cut(s) | 3378 |
| PpsI | GAGTC | 7 cut(s) | 147, 349, 784, 985, 1445, 1673, 2592 |
| PpuMI | RGGWCCY | 1 cut(s) | 1285 |
| PscI | ACATGT | 3 cut(s) | 162, 624, 1755 |
| PshBI | ATTAAT | 1 cut(s) | 2583 |
| PsiI | TTATAA | 1 cut(s) | 576 |
| Psp5II | RGGWCCY | 1 cut(s) | 1285 |
| PspEI | GGTNACC | 2 cut(s) | 1529, 1631 |
| PspFI | CCCAGC | 1 cut(s) | 823 |
| PspPI | GGNCC | 8 cut(s) | 602, 767, 1285, 1847, 1927, 2060, 2082, 2863 |
| PspPPI | RGGWCCY | 1 cut(s) | 1285 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1406, 1438 |
| PstI | CTGCAG | 3 cut(s) | 2694, 3031, 3367 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1262, 2630, 3350 |
| PsyI | GACNNNGTC | 1 cut(s) | 2185 |
| PvuII | CAGCTG | 1 cut(s) | 1504 |
| RsaI | GTAC | 5 cut(s) | 2108, 2303, 2432, 2507, 3065 |
| RsaNI | GTAC | 5 cut(s) | 2107, 2302, 2431, 2506, 3064 |
| RseI | CAYNNNNRTG | 6 cut(s) | 245, 629, 944, 1568, 1620, 2520 |
| SalI | GTCGAC | 1 cut(s) | 1018 |
| SaqAI | TTAA | 3 cut(s) | 102, 2583, 3336 |
| Sau96I | GGNCC | 8 cut(s) | 602, 767, 1285, 1847, 1927, 2060, 2082, 2863 |
| ScaI | AGTACT | 1 cut(s) | 2303 |
| SchI | GAGTC | 7 cut(s) | 148, 349, 785, 985, 1445, 1673, 2592 |
| SduI | GDGCHC | 7 cut(s) | 59, 322, 1234, 2044, 2371, 2613, 2950 |
| SexAI | ACCWGGT | 1 cut(s) | 3343 |
| SfaNI | GCATC | 7 cut(s) | 387, 910, 1462, 1647, 1835, 2377, 2502 |
| SfcI | CTRYAG | 5 cut(s) | 475, 2622, 2690, 3027, 3363 |
| SfoI | GGCGCC | 1 cut(s) | 3376 |
| SfuI | TTCGAA | 1 cut(s) | 1974 |
| SinI | GGWCC | 4 cut(s) | 1285, 1927, 2060, 2082 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 245, 629, 944, 1568, 1620, 2520 |
| SmlI | CTYRAG | 2 cut(s) | 69, 2681 |
| SmoI | CTYRAG | 2 cut(s) | 69, 2681 |
| SphI | GCATGC | 2 cut(s) | 393, 1209 |
| SsiI | CCGC | 4 cut(s) | 251, 744, 1771, 2095 |
| SspDI | GGCGCC | 1 cut(s) | 3374 |
| SspI | AATATT | 1 cut(s) | 2739 |
| SspMI | CTAG | 4 cut(s) | 63, 1376, 1671, 2318 |
| StyI | CCWWGG | 6 cut(s) | 234, 687, 791, 1316, 1557, 3240 |
| TaiI | ACGT | 1 cut(s) | 2715 |
| TaqII | GACCGA | 2 cut(s) | 1005, 1037 |
| TatI | WGTACW | 1 cut(s) | 2301 |
| TauI | GCSGC | 1 cut(s) | 1774 |
| TfiI | GAWTC | 8 cut(s) | 300, 344, 563, 907, 979, 1971, 2125, 2282 |
| Tru1I | TTAA | 3 cut(s) | 102, 2583, 3336 |
| Tru9I | TTAA | 3 cut(s) | 102, 2583, 3336 |
| TseFI | GTSAC | 7 cut(s) | 310, 352, 1529, 1631, 2482, 2497, 2555 |
| TseI | GCWGC | 9 cut(s) | 45, 827, 1262, 1501, 2692, 2957, 3350, 3362, 3365 |
| Tsp45I | GTSAC | 7 cut(s) | 310, 352, 1529, 1631, 2482, 2497, 2555 |
| TspDTI | ATGAA | 9 cut(s) | 194, 206, 437, 650, 1511, 1823, 1843, 1909, 2782 |
| TspGWI | ACGGA | 3 cut(s) | 777, 1892, 2603 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2185 |
| VpaK11BI | GGWCC | 4 cut(s) | 1285, 1927, 2060, 2082 |
| VspI | ATTAAT | 1 cut(s) | 2583 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2870 |
| XapI | RAATTY | 3 cut(s) | 1644, 2263, 2339 |
| XceI | RCATGY | 6 cut(s) | 166, 393, 628, 1209, 1759, 2038 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 506, 1813, 2950, 3247 |
| XmiI | GTMKAC | 5 cut(s) | 1019, 1752, 2538, 2721, 2751 |
| XmnI | GAANNNNTTC | 1 cut(s) | 118 |
| XspI | CTAG | 4 cut(s) | 63, 1376, 1671, 2318 |
| ZrmI | AGTACT | 1 cut(s) | 2303 |
| Zsp2I | ATGCAT | 1 cut(s) | 395 |