pycom05g13940

Belongs to the glycosyltransferase 2 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
17467874 .. 17469124
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13940.1

Sequence Viewer

Length: 1125 bp
ATGCTGGCGGAATCCATACCGGTTGCTGAGTACCAAGGCCGACCCCTAGCTGATCATCCCGCAGTGAAATTTGGACGGCCTCCAGGCATTCTCAGAGCTCCTCGTGATCCGCTAGATGCCACAACTGTTGCTGAAGCCGTGTCTTCCATTTCTTGCTGGTACGAGGACAAGACCGAATGGGGAGACCGTGTGGGGTGGATTTACGGGTCGGTGACAGAAGACGTGGTGACAGGGTACAGAATGCACAACCGAGGATGGCGCTCGGTGTACTGCGTTACCAAGCGTGACGCATTTCGAGGTTCAGCTCCCATTAATCTCACTGATCGACTTCACCAAGTGCTCCGTTGGGCAACAGGTTCTGTCGAAATTTTCTTCTCTCGGAACAATGCCCTCCTCGCCTCAATGCGCCTCAAATTACTACAGCGCCTTGCCTACGTCAATGTCGGTGTCTACCCTTTCACCTCGATCTTTCTCATCGTGTACTGCTTCCTCCCAGCACTCTCGCTCTTCACTGGACAGTTCATCGTGGCGAATCTCAACATCACGTTTTTGATCTACTTGCTAACCATCACCATATGCCTCATTGCTCTGGCCCTCCTGGAGGTGAGGTGGTCGGGGGTCGCGTTGGAAGACTGGTGGCGAAACGAGCAGTTTTGGCTCATCTCCGGAACCAGCGCTCACTTGGCTGCTGTGGTGCAAGGGCTTCTAAAAGTGATGGCAGGGATTGAAATTTCCTTTACCTTGACAGCCAAGTCAGCTGGAGAGGACAATGATGATATATATGCTGACCTCTACCTTGTGAAGTGGACTTCCCTCATGATCCCTCCAATTGTGATTGGAATGGTGAACATAATAGCCATAATCGTCGCATTTTCAAGGGAGGTTTATGCTCTGAATCCTCAGTGGGCGAGGTTTATCGGCGGTGCCTTCTTCAGCTTTTGGGTTTTGGCTCACTTGTATCCTTTTGCCAAGGGTTTGATGGGAAGAAGAAGGAAGACGCCTACCATTGTGTTTGTTTGGTCAGGTCTCATTGCCATTACACTTTCCTTGCTCTGGGTCGCCATTAACCCGCCAGCCCCTGGTGTTGTCGCTGGTGCTGCAGGAGGCGGGTTCCAATTTCCATGA

Protein Analysis

375

Amino Acids

41.58

Weight (kDa)

9.0

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 3 - 358 5.7e-182 Cellulose synthase
Glyco_trans_2_3 PF13632 63 - 186 1.7e-06 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 623
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 6 cut(s) 8, 60, 110, 921, 1070, 1107
AclWI GGATC 2 cut(s) 101, 814
AcsI RAATTY 3 cut(s) 68, 366, 729
AcuI CTGAAG 2 cut(s) 153, 916
AcyI GRCGYC 1 cut(s) 998
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 5 cut(s) 32, 161, 236, 269, 482
AfeI AGCGCT 1 cut(s) 676
AfiI CCNNNNNNNGG 3 cut(s) 601, 1053, 1079
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 728, 876
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 3 cut(s) 82, 597, 1078
AluBI AGCT 5 cut(s) 50, 98, 305, 758, 936
AluI AGCT 5 cut(s) 50, 98, 305, 758, 936
Alw21I GWGCWC 2 cut(s) 100, 342
Alw26I GTCTC 2 cut(s) 177, 1031
AlwI GGATC 2 cut(s) 101, 814
AlwNI CAGNNNCTG 2 cut(s) 359, 1079
Aor13HI TCCGGA 1 cut(s) 665
Aor51HI AGCGCT 1 cut(s) 676
AoxI GGCC 3 cut(s) 37, 77, 591
ApeKI GCWGC 2 cut(s) 686, 1097
ApoI RAATTY 3 cut(s) 68, 366, 729
AseI ATTAAT 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 19
AspLEI GCGC 4 cut(s) 261, 408, 426, 677
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 7 cut(s) 223, 238, 323, 451, 562, 616, 856
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 100
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 4 cut(s) 135, 225, 636, 1001
Bbv12I GWGCWC 2 cut(s) 100, 342
BbvI GCAGC 2 cut(s) 673, 1084
BccI CCATC 4 cut(s) 249, 575, 709, 973
BceAI ACGGC 2 cut(s) 92, 122
BciT130I CCWGG 3 cut(s) 84, 599, 1080
BciVI GTATCC 1 cut(s) 969
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 177, 1031
BfaI CTAG 2 cut(s) 47, 113
BfmI CTRYAG 2 cut(s) 419, 1098
BfoI RGCGCY 3 cut(s) 262, 427, 678
BfuI GTATCC 1 cut(s) 969
BisI GCNGC 2 cut(s) 687, 1098
BlsI GCNGC 2 cut(s) 688, 1099
Bme1390I CCNGG 3 cut(s) 84, 599, 1080
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 3 cut(s) 670, 925, 1112
BmrFI CCNGG 3 cut(s) 84, 599, 1080
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 4 cut(s) 135, 225, 636, 1001
BpmI CTGGAG 3 cut(s) 66, 620, 780
BsaHI GRCGYC 1 cut(s) 998
BsaI GGTCTC 2 cut(s) 177, 1031
BsaJI CCNNGG 4 cut(s) 34, 250, 969, 1078
BsaWI WCCGGW 2 cut(s) 19, 665
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 593, 623
Bsc4I CCNNNNNNNGG 3 cut(s) 601, 1053, 1079
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 517, 638
Bse3DI GCAATG 2 cut(s) 582, 1029
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 3 cut(s) 84, 599, 1080
BseDI CCNNGG 4 cut(s) 34, 250, 969, 1078
BseGI GGATG 2 cut(s) 55, 260
BseLI CCNNNNNNNGG 3 cut(s) 601, 1053, 1079
BseMI GCAATG 2 cut(s) 582, 1029
BseMII CTCAG 3 cut(s) 18, 106, 914
BseNI ACTGG 2 cut(s) 517, 638
BseRI GAGGAG 2 cut(s) 90, 383
BseXI GCAGC 2 cut(s) 673, 1084
BseYI CCCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 3 cut(s) 39, 79, 593
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 100, 342
BsiSI CCGG 2 cut(s) 20, 666
BslI CCNNNNNNNGG 3 cut(s) 601, 1053, 1079
BsmAI GTCTC 2 cut(s) 177, 1031
BsmI GAATGC 2 cut(s) 87, 246
BsnI GGCC 3 cut(s) 39, 79, 593
Bso31I GGTCTC 2 cut(s) 177, 1031
Bsp1286I GDGCHC 2 cut(s) 100, 342
Bsp13I TCCGGA 1 cut(s) 665
Bsp143I GATC 6 cut(s) 52, 106, 322, 465, 552, 819
BspACI CCGC 6 cut(s) 8, 60, 110, 921, 1070, 1107
BspANI GGCC 3 cut(s) 39, 79, 593
BspCNI CTCAG 3 cut(s) 19, 105, 913
BspEI TCCGGA 1 cut(s) 665
BspFNI CGCG 1 cut(s) 623
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 670, 925, 1112
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 2 cut(s) 101, 814
BspQI GCTCTTC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 2 cut(s) 177, 1031
BsrDI GCAATG 2 cut(s) 582, 1029
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 517, 638
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 4 cut(s) 34, 250, 969, 1078
BssMI GATC 6 cut(s) 52, 106, 322, 465, 552, 819
BssNI GRCGYC 1 cut(s) 998
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 34, 969
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 84, 599, 1080
Bst4CI ACNGT 3 cut(s) 127, 188, 519
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 998
BstC8I GCNNGC 2 cut(s) 6, 1074
BstDEI CTNAG 3 cut(s) 27, 92, 900
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 55, 260
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 3 cut(s) 262, 427, 678
BstHHI GCGC 4 cut(s) 261, 408, 426, 677
BstKTI GATC 6 cut(s) 55, 109, 325, 468, 555, 822
BstMAI GTCTC 2 cut(s) 177, 1031
BstMBI GATC 6 cut(s) 52, 106, 322, 465, 552, 819
BstMWI GCNNNNNNNGC 6 cut(s) 395, 646, 655, 683, 755, 1097
BstNI CCWGG 3 cut(s) 84, 599, 1080
BstSCI CCNGG 3 cut(s) 82, 597, 1078
BstSFI CTRYAG 2 cut(s) 419, 1098
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 673, 1084
BstV2I GAAGAC 4 cut(s) 135, 225, 636, 1001
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 3 cut(s) 39, 79, 593
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 55, 260
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 69, 318, 510, 908
Cac8I GCNNGC 2 cut(s) 6, 1074
CaiI CAGNNNCTG 2 cut(s) 359, 1079
CciI TCATGA 1 cut(s) 816
CfoI GCGC 4 cut(s) 261, 408, 426, 677
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 592
CseI GACGC 2 cut(s) 296, 1006
Csp6I GTAC 5 cut(s) 31, 160, 235, 268, 481
CspAI ACCGGT 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 2 cut(s) 817, 1122
CviQI GTAC 5 cut(s) 31, 160, 235, 268, 481
DdeI CTNAG 3 cut(s) 27, 92, 900
DpnI GATC 6 cut(s) 54, 108, 324, 467, 554, 821
DpnII GATC 6 cut(s) 52, 106, 322, 465, 552, 819
DraIII CACNNNGTG 1 cut(s) 337
DrdI GACNNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 34, 969
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 2 cut(s) 177, 1031
Eco47III AGCGCT 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 153, 916
EcoICRI GAGCTC 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoRII CCWGG 3 cut(s) 82, 597, 1078
EcoT14I CCWWGG 2 cut(s) 34, 969
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 2 cut(s) 34, 969
FaeI CATG 2 cut(s) 820, 1125
FatI CATG 2 cut(s) 816, 1121
FauI CCCGC 3 cut(s) 67, 1077, 1100
FauNDI CATATG 1 cut(s) 575
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 687, 1098
FokI GGATG 2 cut(s) 42, 267
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 687, 1098
FspBI CTAG 2 cut(s) 47, 113
GlaI GCGC 4 cut(s) 260, 407, 425, 676
GluI GCNGC 2 cut(s) 687, 1098
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 3 cut(s) 66, 620, 780
HaeII RGCGCY 3 cut(s) 262, 427, 678
HaeIII GGCC 3 cut(s) 39, 79, 593
HapII CCGG 2 cut(s) 20, 666
HgaI GACGC 2 cut(s) 296, 1006
HhaI GCGC 4 cut(s) 261, 408, 426, 677
Hin1I GRCGYC 1 cut(s) 998
Hin1II CATG 2 cut(s) 820, 1125
Hin6I GCGC 4 cut(s) 259, 406, 424, 675
HinP1I GCGC 4 cut(s) 259, 406, 424, 675
HinfI GANTC 3 cut(s) 11, 532, 895
HpaII CCGG 2 cut(s) 20, 666
HphI GGTGA 7 cut(s) 223, 238, 323, 451, 562, 616, 856
Hpy166II GTNNAC 5 cut(s) 268, 451, 481, 807, 847
Hpy188I TCNGA 3 cut(s) 95, 381, 894
Hpy188III TCNNGA 3 cut(s) 104, 666, 817
Hpy8I GTNNAC 5 cut(s) 268, 451, 481, 807, 847
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 2 cut(s) 937, 984
HpyCH4III ACNGT 3 cut(s) 127, 188, 519
HpyCH4IV ACGT 3 cut(s) 222, 435, 545
HpyCH4V TGCA 3 cut(s) 244, 697, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 395, 646, 655, 683, 755, 1097
HpyF3I CTNAG 3 cut(s) 27, 92, 900
HpySE526I ACGT 3 cut(s) 222, 435, 545
Hsp92I GRCGYC 1 cut(s) 998
Hsp92II CATG 2 cut(s) 820, 1125
HspAI GCGC 4 cut(s) 259, 406, 424, 675
Kpn2I TCCGGA 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 6 cut(s) 52, 106, 322, 465, 552, 819
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 3 cut(s) 103, 310, 345
Lsp1109I GCAGC 2 cut(s) 673, 1084
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 47, 113
MaeII ACGT 3 cut(s) 222, 435, 545
MaeIII GTNAC 4 cut(s) 211, 226, 274, 284
MalI GATC 6 cut(s) 54, 108, 324, 467, 554, 821
MboI GATC 6 cut(s) 52, 106, 322, 465, 552, 819
MboII GAAGA 9 cut(s) 135, 230, 364, 499, 641, 922, 996, 999, 1006
MfeI CAATTG 1 cut(s) 828
MhlI GDGCHC 2 cut(s) 100, 342
MluCI AATT 6 cut(s) 68, 366, 413, 729, 828, 1115
MmeI TCCRAC 1 cut(s) 606
MroI TCCGGA 1 cut(s) 665
MseI TTAA 2 cut(s) 312, 1065
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 2 cut(s) 20, 666
MspR9I CCNGG 3 cut(s) 84, 599, 1080
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 2 cut(s) 87, 246
MvaI CCWGG 3 cut(s) 84, 599, 1080
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 6 cut(s) 395, 646, 655, 683, 755, 1097
NdeI CATATG 1 cut(s) 575
NdeII GATC 6 cut(s) 52, 106, 322, 465, 552, 819
NlaIII CATG 2 cut(s) 820, 1125
NlaIV GGNNCC 3 cut(s) 670, 925, 1112
NmuCI GTSAC 3 cut(s) 211, 226, 284
PagI TCATGA 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PctI GAATGC 2 cut(s) 87, 246
PfeI GAWTC 3 cut(s) 11, 532, 895
PflMI CCANNNNNTGG 1 cut(s) 1079
PfoI TCCNGGA 1 cut(s) 597
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 2 cut(s) 688, 1099
PshBI ATTAAT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 82, 597, 1078
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 3 cut(s) 82, 597, 1078
PspN4I GGNNCC 3 cut(s) 670, 925, 1112
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 2 cut(s) 359, 1079
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 5 cut(s) 32, 161, 236, 269, 482
RsaNI GTAC 5 cut(s) 31, 160, 235, 268, 481
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 312, 1065
SatI GCNGC 2 cut(s) 687, 1098
Sau3AI GATC 6 cut(s) 52, 106, 322, 465, 552, 819
Sau96I GGNCC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 84, 599, 1080
SduI GDGCHC 2 cut(s) 100, 342
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 419, 1098
Sse9I AATT 6 cut(s) 68, 366, 413, 729, 828, 1115
SsiI CCGC 6 cut(s) 8, 60, 110, 921, 1070, 1107
SspMI CTAG 2 cut(s) 47, 113
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 82, 597, 1078
StyI CCWWGG 2 cut(s) 34, 969
TaaI ACNGT 3 cut(s) 127, 188, 519
TaiI ACGT 3 cut(s) 225, 438, 548
TaqI TCGA 4 cut(s) 295, 325, 363, 464
TaqII GACCGA 1 cut(s) 188
TasI AATT 6 cut(s) 68, 366, 413, 729, 828, 1115
TatI WGTACW 2 cut(s) 267, 480
TfiI GAWTC 3 cut(s) 11, 532, 895
Tru1I TTAA 2 cut(s) 312, 1065
Tru9I TTAA 2 cut(s) 312, 1065
TscAI CASTG 4 cut(s) 69, 325, 517, 908
TseFI GTSAC 3 cut(s) 211, 226, 284
TseI GCWGC 2 cut(s) 686, 1097
Tsp45I GTSAC 3 cut(s) 211, 226, 284
TspDTI ATGAA 1 cut(s) 511
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 4 cut(s) 69, 325, 517, 908
Van91I CCANNNNNTGG 1 cut(s) 1079
VspI ATTAAT 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 3 cut(s) 68, 366, 729
XcmI CCANNNNNNNNNTGG 2 cut(s) 679, 976
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 2 cut(s) 47, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.