Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004940

Physical Location & Seq

Genomic Coordinates Reverse (-)

693079 .. 694515

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGTAAGACACGTGGTATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATTAACCAGAGGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAATGAGTGGAAGAAGCCTTTTGCTGGTTCTTCTCACGCTAAAGGAATTGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTTATCAAGAATGGAAAGAAGATTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATCGAGGAAAACGATGAGGTCTTGATTGCTGGATTTGGTCGTAAGGGTCACGCTGTGGGAGATATTCCCGGAGTTAGGTTCAAGGTCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

142

Amino Acids

15.74

Weight (kDa)

10.37

Isoelectric Point (pI)

19.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	38 - 141	3.7e-48	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02960
fragaria_vesca	FvH4_3g33640 FvH4_5g32110
malus_domestica	MD01G1131500.v1.1 MD03G1110100.v1.1 MD07G1179600.v1.1 MD11G1123500.v1.1
prunus_persica	Prupe.6G092700_v2.0.a1
pyrus_communis	pycom01g14030 pycom07g17310 pycom11g10430
rosa_chinensis	RchiOBHm_Chr1g0342271 RchiOBHm_Chr5g0061071 RchiOBHm_Chr7g0228161
rosa_laevigata	RLG00000001583 RLG00000035426
rosa_multiflora	Rmu_sc0001366.1_g000036 Rmu_sc0012031.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019570 Rroxscaffold_3G00231350 Rroxscaffold_4G00312740
rosa_rugosa	Rorug05G0337000 Rorug07G0246200
rosa_samantha	Rh5BG411700 Rh5CG436700 Rh5DG426100 Rh7BG381600 Rh7CG418500 Rh7DG396400
rosa_wichuraiana	Rw5G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	59
AcvI	CACGTG	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	5 cut(s)	64, 122, 260, 351, 400
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	271, 358, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	26, 37, 217
AluI	AGCT	3 cut(s)	26, 37, 217
Alw26I	GTCTC	2 cut(s)	37, 93
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	178, 242
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	190, 229
BccI	CCATC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	37, 93
BfaI	CTAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	2 cut(s)	179, 243
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	180, 244
Bme1390I	CCNGG	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 122, 260, 351, 400
BseLI	CCNNNNNNNGG	5 cut(s)	64, 122, 260, 351, 400
BseXI	GCAGC	2 cut(s)	190, 229
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	5 cut(s)	64, 122, 260, 351, 400
BsmAI	GTCTC	2 cut(s)	37, 93
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	422
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	392
BssMI	GATC	1 cut(s)	422
Bst6I	CTCTTC	2 cut(s)	35, 401
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstKTI	GATC	1 cut(s)	425
BstMAI	GTCTC	2 cut(s)	37, 93
BstMBI	GATC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	190, 229
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	9 cut(s)	26, 37, 68, 115, 173, 181, 217, 392, 418
CviKI_1	RGCY	9 cut(s)	26, 37, 68, 115, 173, 181, 217, 392, 418
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	424
DpnII	GATC	1 cut(s)	422
DraIII	CACNNNGTG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	35, 401
EarI	CTCTTC	2 cut(s)	35, 401
Eco57I	CTGAAG	1 cut(s)	59
Eco72I	CACGTG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	398
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	179, 243
Fsp4HI	GCNGC	2 cut(s)	179, 243
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	179, 243
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	345
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	345
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	4 cut(s)	152, 223, 298, 364
HpyAV	CCTTC	2 cut(s)	361, 403
HpyCH4IV	ACGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	12, 71, 108, 291, 358, 360
Lsp1109I	GCAGC	2 cut(s)	190, 229
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	424
MboI	GATC	1 cut(s)	422
MboII	GAAGA	5 cut(s)	52, 120, 121, 247, 388
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	3 cut(s)	51, 144, 159
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	54, 163, 274, 286, 404
MseI	TTAA	2 cut(s)	54, 427
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	180, 244
PleI	GAGTC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	54, 427
SatI	GCNGC	2 cut(s)	179, 243
Sau3AI	GATC	1 cut(s)	422
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	9 cut(s)	16, 28, 39, 65, 219, 297, 356, 363, 372
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	51, 144, 159
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	343
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	51, 144, 159
TatI	WGTACW	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	54, 427
Tru9I	TTAA	2 cut(s)	54, 427
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	178, 242
Tsp45I	GTSAC	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.