Rroxscaffold_4G00312740

Belongs to the universal ribosomal protein uS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004940
Physical Location & Seq
Forward (+)
35875349 .. 35875780
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312740.1

Sequence Viewer

Length: 306 bp
ATGCGGAAGACACGTTGCATTGTTCTTGAGAAAATTGCTATAGAAGCTAAGCAGCCTAACTCTATCATCAGAAAGTGTGCTCGAGTTCAGCTTATCAAAAACGTGAAGAAGATTGCTGCCTTTGTGCCAAATGATGGTTGCCTGAACTATATTGAAGAGAATGACGAGGTGCTCATTGTTGGATTTGGTCGTAAGAGGCATGTTGTTGGTGATATTCTTGGAGTTCGTTTCAAGGTCGTGAAGGTTTCTGCGATATCACTTTTGGCACTCTATAAGGAGGAAAAAGAGAAGCGAGCTTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosom_S12_S23

Protein Analysis

101

Amino Acids

11.46

Weight (kDa)

9.86

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 4 - 98 3.9e-36 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 155, 232
AluBI AGCT 3 cut(s) 47, 91, 296
AluI AGCT 3 cut(s) 47, 91, 296
Alw21I GWGCWC 2 cut(s) 82, 174
Ama87I CYCGRG 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 52, 116
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 82, 174
BbvI GCAGC 2 cut(s) 64, 103
BccI CCATC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 53, 117
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 2 cut(s) 54, 118
BmeT110I CYCGRG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 64, 103
BsiHKAI GWGCWC 2 cut(s) 82, 174
BsiHKCI CYCGRG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 82, 174
Bsp1720I GCTNAGC 1 cut(s) 48
BspACI CCGC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 64, 103
BstV2I GAAGAC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 294
CviAII CATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 47, 55, 91, 296
CviKI_1 RGCY 4 cut(s) 47, 55, 91, 296
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 255
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 41, 150, 201, 273
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 53, 117
Fsp4HI GCNGC 2 cut(s) 53, 117
GluI GCNGC 2 cut(s) 53, 117
Hin1II CATG 1 cut(s) 203
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 26, 238
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 13, 102
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 13, 102
Hsp92II CATG 1 cut(s) 203
LpnPI CCDG 1 cut(s) 155
Lsp1109I GCAGC 2 cut(s) 64, 103
MaeII ACGT 2 cut(s) 13, 102
MboII GAAGA 4 cut(s) 19, 118, 121, 167
MhlI GDGCHC 2 cut(s) 82, 174
MluCI AATT 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 160, 189, 271
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 203
NspI RCATGY 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 54, 118
PspXI VCTCGAGB 1 cut(s) 81
SatI GCNGC 2 cut(s) 53, 117
SduI GDGCHC 2 cut(s) 82, 174
SetI ASST 8 cut(s) 16, 49, 93, 105, 171, 237, 246, 298
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 26, 81
SmoI CTYRAG 2 cut(s) 26, 81
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 4
TaiI ACGT 2 cut(s) 16, 105
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 33
TseI GCWGC 2 cut(s) 52, 116
Van91I CCANNNNNTGG 1 cut(s) 134
XceI RCATGY 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.