Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004940

Physical Location & Seq

Genomic Coordinates Reverse (-)

19824030 .. 19825570

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGAATGATTGGGAACAAGTAGCGAAAACACGTGGAATGGGAGCTGCTCGTAAGCTCAAGACCCACCGCAGGAATCAGAGGTGGGCTGACAAGTCGTACAAGAAGTCCCACCTTGGGAATGAATGGAAAAAGCCATTTTCTGGTTCATCTCATGCCAAAGGCATTGTCCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAATGTGCTCGTGTTCAGCTGATCAAAAATGGAAAGAAGATTGCTGCTTTTGTACCCAACGATGGTTGCTTAAACTACATTGAGGAAAATGATGAGGTGTTGATTGCTGGATTCGGACGGAAGGGGCATGCAGTGGGAGATATTCCCGGAGTCAGGTTCAAGGTTGTGAAGGTATCTGGTGTCTCTCTGTTGGCCCTCTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

150

Amino Acids

16.58

Weight (kDa)

10.22

Isoelectric Point (pI)

19.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02960
fragaria_vesca	FvH4_3g33640 FvH4_5g32110
malus_domestica	MD01G1131500.v1.1 MD03G1110100.v1.1 MD07G1179600.v1.1 MD11G1123500.v1.1
prunus_persica	Prupe.6G092700_v2.0.a1
pyrus_communis	pycom01g14030 pycom07g17310 pycom11g10430
rosa_chinensis	RchiOBHm_Chr1g0342271 RchiOBHm_Chr5g0061071 RchiOBHm_Chr7g0228161
rosa_laevigata	RLG00000001583 RLG00000035426
rosa_multiflora	Rmu_sc0001366.1_g000036 Rmu_sc0012031.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019570 Rroxscaffold_3G00231350 Rroxscaffold_4G00312740
rosa_rugosa	Rorug05G0337000 Rorug07G0246200
rosa_samantha	Rh5BG411700 Rh5CG436700 Rh5DG426100 Rh7BG381600 Rh7CG418500 Rh7DG396400
rosa_wichuraiana	Rw5G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	70
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	101, 273
AfiI	CCNNNNNNNGG	6 cut(s)	72, 117, 143, 281, 372, 421
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	379, 421
AluBI	AGCT	3 cut(s)	47, 58, 238
AluI	AGCT	3 cut(s)	47, 58, 238
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	47, 199, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	366
BauI	CACGAG	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	34, 211, 250
BccI	CCATC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	3 cut(s)	48, 200, 264
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	3 cut(s)	49, 201, 265
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	115, 440
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 117, 143, 281, 372, 421
BseDI	CCNNGG	2 cut(s)	115, 440
BseLI	CCNNNNNNNGG	6 cut(s)	72, 117, 143, 281, 372, 421
BseXI	GCAGC	3 cut(s)	34, 211, 250
BshFI	GGCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	6 cut(s)	72, 117, 143, 281, 372, 421
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	240
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	115, 440
BssMI	GATC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	115, 440
Bst2BI	CACGAG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	34, 211, 250
BsuRI	GGCC	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	100, 272
CviAII	CATG	2 cut(s)	155, 347
CviJI	RGCY	9 cut(s)	47, 58, 89, 136, 194, 202, 238, 413, 439
CviKI_1	RGCY	9 cut(s)	47, 58, 89, 136, 194, 202, 238, 413, 439
CviQI	GTAC	2 cut(s)	100, 272
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	115, 440
Eco72I	CACGTG	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	115, 440
ErhI	CCWWGG	2 cut(s)	115, 440
FaeI	CATG	2 cut(s)	158, 350
FaiI	YATR	2 cut(s)	156, 348
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	154, 346
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	48, 200, 264
Fsp4HI	GCNGC	3 cut(s)	48, 200, 264
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	48, 200, 264
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	158, 350
HinfI	GANTC	3 cut(s)	76, 330, 369
HpaII	CCGG	1 cut(s)	366
Hpy188I	TCNGA	2 cut(s)	81, 335
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	334, 382, 424
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	158, 350
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	58, 129, 312, 358, 379, 381
Lsp1109I	GCAGC	3 cut(s)	34, 211, 250
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	34
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	3 cut(s)	268, 409, 439
MhlI	GDGCHC	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	75, 184, 295, 307, 425
MseI	TTAA	2 cut(s)	290, 448
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	366
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	2 cut(s)	158, 350
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	76, 330
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	49, 201, 265
PleI	GAGTC	1 cut(s)	377
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	377
Ppu21I	YACGTR	1 cut(s)	35
PspCI	CACGTG	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	101, 273
RsaNI	GTAC	2 cut(s)	100, 272
SaqAI	TTAA	2 cut(s)	290, 448
SatI	GCNGC	3 cut(s)	48, 200, 264
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SphI	GCATGC	1 cut(s)	350
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	115, 440
TaiI	ACGT	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	76, 330
Tru1I	TTAA	2 cut(s)	290, 448
Tru9I	TTAA	2 cut(s)	290, 448
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	3 cut(s)	47, 199, 263
TspDTI	ATGAA	2 cut(s)	138, 138
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.