Rh7BG381600

Belongs to the universal ribosomal protein uS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004940
Physical Location & Seq
Forward (+)
41247242 .. 41249007
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG381600.1

Sequence Viewer

Length: 411 bp
ATGGGAGCTGCCCGCAAGCTGAAGGACCACCGTAGAAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGAAATGAGTGGAAGAAGCCATTTGCGGGATCTTCCCATGCTAAAGGCATTGTTCTTGAGAAAATTGGTATTGAAGCTAAGCAGCCTAACTCTGCCATTAGGAAATGTGCTCGAGTTCAGCTGATTAAGAATGGAAAGAAGATTGCTGCTTTTGTGCCAAATGATGGTTGCCTGAACTACATTGAAGAGAATGACGAGGTGCTTATTGCTGGATTCGGTCGGAAAGGTCATGCTGTCGGTGATATTCCTGGAGTTAGGTTCAAGGTTGTGAAGGTTTCAGGCGTGTCACTTCTGGCTCTCTTCAAGGAGAAGAAGGAAAAGCCAAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosom_S12_S23

Protein Analysis

136

Amino Acids

15.15

Weight (kDa)

10.27

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 32 - 135 3.2e-48 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 2 cut(s) 13, 104
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 104, 242
AgsI TTSAA 4 cut(s) 152, 263, 340, 382
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 8, 19, 155, 199
AluI AGCT 4 cut(s) 8, 19, 155, 199
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 8, 160, 224
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 172, 211
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 75
BisI GCNGC 3 cut(s) 9, 161, 225
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 3 cut(s) 10, 162, 226
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 242
BseBI CCWGG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 104, 242
BseXI GCAGC 2 cut(s) 172, 211
Bsh1285I CGRYCG 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 104, 242
BsmAI GTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 107, 404
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 13, 104
BspPI GGATC 1 cut(s) 115
BssMI GATC 2 cut(s) 107, 404
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 258, 383
BstC8I GCNNGC 2 cut(s) 13, 17
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 2 cut(s) 110, 407
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 107, 404
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 172, 211
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 13, 17
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 2 cut(s) 116, 308
CviJI RGCY 9 cut(s) 8, 19, 50, 97, 155, 163, 199, 374, 400
CviKI_1 RGCY 9 cut(s) 8, 19, 50, 97, 155, 163, 199, 374, 400
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 109, 406
DpnII GATC 2 cut(s) 107, 404
Eam1104I CTCTTC 2 cut(s) 258, 383
EarI CTCTTC 2 cut(s) 258, 383
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 119, 311
FaiI YATR 4 cut(s) 61, 117, 309, 409
FatI CATG 2 cut(s) 115, 307
FauI CCCGC 2 cut(s) 20, 97
Fnu4HI GCNGC 3 cut(s) 9, 161, 225
Fsp4HI GCNGC 3 cut(s) 9, 161, 225
GluI GCNGC 3 cut(s) 9, 161, 225
GsuI CTGGAG 1 cut(s) 348
Hin1II CATG 2 cut(s) 119, 311
HinfI GANTC 1 cut(s) 291
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 16, 30, 343, 385
HpyCH4III ACNGT 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 119, 311
Kzo9I GATC 2 cut(s) 107, 404
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 263, 273, 312, 339, 342, 356
Lsp1109I GCAGC 2 cut(s) 172, 211
MaeIII GTNAC 1 cut(s) 363
MalI GATC 2 cut(s) 109, 406
MboI GATC 2 cut(s) 107, 404
MboII GAAGA 6 cut(s) 102, 103, 229, 275, 370, 400
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
NdeII GATC 2 cut(s) 107, 404
NlaIII CATG 2 cut(s) 119, 311
NmuCI GTSAC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 189
PfeI GAWTC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 3 cut(s) 10, 162, 226
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 1 cut(s) 25
PspXI VCTCGAGB 1 cut(s) 189
PsuI RGATCY 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 9, 161, 225
Sau3AI GATC 2 cut(s) 107, 404
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 134, 189
SmoI CTYRAG 2 cut(s) 134, 189
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 13, 104
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 1 cut(s) 284
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 3 cut(s) 8, 160, 224
Tsp45I GTSAC 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.