RchiOBHm_Chr7g0228161

Belongs to the universal ribosomal protein uS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004940
Physical Location & Seq
Forward (+)
51513479 .. 51515208
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20436

Sequence Viewer

Length: 429 bp
ATGGGGAAGACACGTGGTATGGGAGCTGCCCGCAAGCTGAAGGACCACCGTAGAAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGAAATGAGTGGAAGAAGCCATTTGCTGGATCTTCCCATGCTAAAGGCATTGTTCTTGAAAAAATTGGTATTGAAGCTAAGCAGCCTAACTCTGCCATTAGGAAATGTGCTCGAGTTCAGCTCATTAAGAATGGAAAGAAGATTGCTGCTTTTGTGCCAAATGATGGTTGCCTGAACTACATTGAAGAGAATGACGAGGTGCTTATTGCTGGATTCGGTCGGAAAGGGCATGCTGTCGGTGATATTCCTGGAGTTAGGTTCAAGGTTGTGAAGGTTTCAGGCGTGTCACTTCTGGCTCTCTTTAAGGAGAAGAAGGAAAAGCCAAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosom_S12_S23

Protein Analysis

142

Amino Acids

15.78

Weight (kDa)

10.37

Isoelectric Point (pI)

24.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 38 - 141 3.7e-48 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 122, 260
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 59
AcvI CACGTG 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 122, 260
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 155, 170, 281, 358
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 4 cut(s) 26, 37, 173, 217
AluI AGCT 4 cut(s) 26, 37, 173, 217
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 207
ApeKI GCWGC 3 cut(s) 26, 178, 242
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 13, 190, 229
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 93
BglII AGATCT 1 cut(s) 422
BisI GCNGC 3 cut(s) 27, 179, 243
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 3 cut(s) 28, 180, 244
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 260
BseBI CCWGG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 122, 260
BseXI GCAGC 3 cut(s) 13, 190, 229
Bsh1285I CGRYCG 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 122, 260
BsmAI GTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 125, 422
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 133
BssMI GATC 2 cut(s) 125, 422
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 31, 35, 327
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 2 cut(s) 128, 425
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 125, 422
BstMCI CGRYCG 1 cut(s) 316
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 13, 190, 229
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 125, 422
BstYI RGATCY 2 cut(s) 125, 422
Cac8I GCNNGC 3 cut(s) 31, 35, 327
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 2 cut(s) 134, 326
CviJI RGCY 9 cut(s) 26, 37, 68, 115, 173, 181, 217, 392, 418
CviKI_1 RGCY 9 cut(s) 26, 37, 68, 115, 173, 181, 217, 392, 418
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 127, 424
DpnII GATC 2 cut(s) 125, 422
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 59
Eco72I CACGTG 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 137, 329
FaiI YATR 4 cut(s) 20, 79, 135, 327
FatI CATG 2 cut(s) 133, 325
FauI CCCGC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 27, 179, 243
Fsp4HI GCNGC 3 cut(s) 27, 179, 243
GluI GCNGC 3 cut(s) 27, 179, 243
GsuI CTGGAG 1 cut(s) 366
Hin1II CATG 2 cut(s) 137, 329
HinfI GANTC 1 cut(s) 309
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 34, 48, 361, 403
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 137, 329
Kzo9I GATC 2 cut(s) 125, 422
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 7 cut(s) 108, 281, 291, 330, 357, 360, 374
Lsp1109I GCAGC 3 cut(s) 13, 190, 229
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 381
MalI GATC 2 cut(s) 127, 424
MboI GATC 2 cut(s) 125, 422
MboII GAAGA 6 cut(s) 19, 120, 121, 247, 293, 418
MflI RGATCY 2 cut(s) 125, 422
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 1 cut(s) 286
MseI TTAA 3 cut(s) 222, 399, 427
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
NdeII GATC 2 cut(s) 125, 422
NlaIII CATG 2 cut(s) 137, 329
NmuCI GTSAC 1 cut(s) 381
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 207
PfeI GAWTC 1 cut(s) 309
PflMI CCANNNNNTGG 2 cut(s) 122, 260
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 3 cut(s) 28, 180, 244
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 343
PspCI CACGTG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 1 cut(s) 43
PspXI VCTCGAGB 1 cut(s) 207
PsuI RGATCY 2 cut(s) 125, 422
SaqAI TTAA 3 cut(s) 222, 399, 427
SatI GCNGC 3 cut(s) 27, 179, 243
Sau3AI GATC 2 cut(s) 125, 422
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 208
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SphI GCATGC 1 cut(s) 329
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 208
TaqII GACCGA 1 cut(s) 302
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 3 cut(s) 222, 399, 427
Tru9I TTAA 3 cut(s) 222, 399, 427
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 3 cut(s) 26, 178, 242
Tsp45I GTSAC 1 cut(s) 381
Van91I CCANNNNNTGG 2 cut(s) 122, 260
VpaK11BI GGWCC 1 cut(s) 43
XceI RCATGY 1 cut(s) 329
XhoI CTCGAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.