Rorug05G0337000

Belongs to the universal ribosomal protein uS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004940
Physical Location & Seq
Forward (+)
40905781 .. 40907270
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0337000.1

Sequence Viewer

Length: 606 bp
ATGGCAACAGCTCTGCTGCTCCCTCCTTCTCCTTGTCTTTCCTCTGCTTCTTTCTTGAACAACAATGGAGAACTAAGAAGTTGCTGCTGTGCCTCTATTCAACAATCCAAGCGCAATTCTCACTTGAAAGGTTTAAGAGTCAGAGCCCTCAAAGAGAAAACGGAGAAAATCGAAAACCCACCTTCATCTTCTTCACCTCCTAAAGCTTCAGCTGAGGAAATTGCCAAGAAGTATGGCCTTGAAGCTGGTCTCTGGAAGATATTCAGCTCAAAAGAGGAAGAAAAGGAAGGTGAAGAGAAGAAGTCAAAGGGTGATGAAGCCAAGGAATTGCTAGCTAAATATGGAGGGGCATATCTGGCCACCTCTATTGCACTGTCCATTATATCGTTTTCGTTGTGTTATGCGCTAATCAGCGTCGGCGTTGATGTCCAAGCTTTGCTGCAGAAGGTTGGAATCTCAGGTAGTGAGGCTGGAGAGAAAGTTGGAACTTTTGCTTTGGCATATGCTGCACATAAAGCTGCATCTCCAATTAGGTTTCCTCCGACTGTGGCTCTCACTCCAGTAGTCGCCAGTTGGATTGGGAAGATAGTCGGAAAAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosom_S12_S23

Protein Analysis

201

Amino Acids

21.31

Weight (kDa)

9.12

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 106 - 188 4.5e-25 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 58, 101, 127, 242
AluBI AGCT 8 cut(s) 11, 206, 212, 245, 267, 335, 434, 518
AluI AGCT 8 cut(s) 11, 206, 212, 245, 267, 335, 434, 518
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 2 cut(s) 235, 357
ApeKI GCWGC 5 cut(s) 16, 84, 439, 506, 518
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 114, 406
AsuHPI GGTGA 3 cut(s) 186, 302, 323
AsuNHI GCTAGC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 5 cut(s) 3, 71, 426, 493, 505
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 5 cut(s) 17, 85, 440, 507, 519
BlsI GCNGC 5 cut(s) 18, 86, 441, 508, 520
BmsI GCATC 1 cut(s) 530
BmtI GCTAGC 1 cut(s) 335
BpmI CTGGAG 2 cut(s) 492, 543
Bpu10I CCTNAGC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bse1I ACTGG 2 cut(s) 560, 570
BseDI CCNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 204, 471
BseNI ACTGG 2 cut(s) 560, 570
BseXI GCAGC 5 cut(s) 3, 71, 426, 493, 505
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 237, 359
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 237, 359
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 148
BspANI GGCC 2 cut(s) 237, 359
BspCNI CTCAG 2 cut(s) 205, 470
BspMAI CTGCAG 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 560, 570
BssECI CCNNGG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 375, 547
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 74, 213, 457
BstHHI GCGC 2 cut(s) 114, 406
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 356, 506, 515
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 5 cut(s) 3, 71, 426, 493, 505
BsuRI GGCC 2 cut(s) 237, 359
BtsIMutI CAGTG 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 114, 406
CseI GACGC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
DdeI CTNAG 3 cut(s) 74, 213, 457
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 321
FaiI YATR 8 cut(s) 234, 342, 352, 383, 402, 502, 504, 513
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 5 cut(s) 17, 85, 440, 507, 519
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 5 cut(s) 17, 85, 440, 507, 519
FspBI CTAG 1 cut(s) 332
GlaI GCGC 2 cut(s) 113, 405
GluI GCNGC 5 cut(s) 17, 85, 440, 507, 519
GsuI CTGGAG 2 cut(s) 492, 543
HaeIII GGCC 2 cut(s) 237, 359
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 114, 406
Hin6I GCGC 2 cut(s) 112, 404
HinP1I GCGC 2 cut(s) 112, 404
HindIII AAGCTT 2 cut(s) 204, 432
HinfI GANTC 2 cut(s) 138, 453
HphI GGTGA 3 cut(s) 186, 302, 323
Hpy188I TCNGA 3 cut(s) 143, 543, 593
Hpy188III TCNNGA 2 cut(s) 55, 253
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 4 cut(s) 36, 192, 281, 439
HpyCH4III ACNGT 2 cut(s) 375, 547
HpyCH4V TGCA 4 cut(s) 371, 442, 509, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 506, 515
HpyF3I CTNAG 3 cut(s) 74, 213, 457
HspAI GCGC 2 cut(s) 112, 404
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 231, 238, 341, 444, 456, 573, 583
Lsp1109I GCAGC 5 cut(s) 3, 71, 426, 493, 505
LweI GCATC 1 cut(s) 530
MaeI CTAG 1 cut(s) 332
MboII GAAGA 7 cut(s) 180, 183, 268, 290, 305, 310, 595
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 115, 219, 326, 528
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 5 cut(s) 430, 463, 554, 566, 571
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 359
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 356, 506, 515
NdeI CATATG 1 cut(s) 502
NheI GCTAGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 5 cut(s) 18, 86, 441, 508, 520
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 444
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 5 cut(s) 17, 85, 440, 507, 519
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 530
SfcI CTRYAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 115, 219, 326, 528
SspMI CTAG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 375, 547
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 115, 219, 326, 528
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 378
TseI GCWGC 5 cut(s) 16, 84, 439, 506, 518
TspDTI ATGAA 2 cut(s) 174, 330
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.