Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004940

Physical Location & Seq

Genomic Coordinates Forward (+)

22818857 .. 22819372

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0246200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCGTCAAAAATTGACAACCCTGCAGAAACCATGTCATCAAACACCGAAAACCCTGCTGCAACCACATCATCGAAGAAGAAGATTATAACCCTGCAGAGCTCCGATGGAGAGGCTTTTGATATTGAAGAGGTGGTGGCCCTTGAATCGCAAACAATTAAGCACATGGTGGAGGATGACTGCGTCGACAATGGCGTCCCTCTGCCGAATGTGACAGGTGTCATTCTAGCCAAGGTTATTGAGTATTGCAAGAAGCACGTAGAGGAGCGGACCGCCGAGCTCAAGACTTGGGACCGTGAGTACATCGACGTCGACCAGAACGTACTCTTTGATCTCATATTGGCAGCCAACTATCTGAATATAAAAGGGCTGCTGGACTTGGCTTGCCAGCAAGCGGCGGACATGATCAAGGGAAAGACTCCGGAGGAGATTCGCAAAACTTTCAACATCAAGAATGACTTCACTCCTGAGGAAGAAGAGGAGATTCGGAAGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

171

Amino Acids

19.32

Weight (kDa)

4.55

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	28 - 87	1.7e-28	Skp1 family, tetramerisation domain
Skp1	PF01466	122 - 169	3.1e-30	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02960
fragaria_vesca	FvH4_3g33640 FvH4_5g32110
malus_domestica	MD01G1131500.v1.1 MD03G1110100.v1.1 MD07G1179600.v1.1 MD11G1123500.v1.1
prunus_persica	Prupe.6G092700_v2.0.a1
pyrus_communis	pycom01g14030 pycom07g17310 pycom11g10430
rosa_chinensis	RchiOBHm_Chr1g0342271 RchiOBHm_Chr5g0061071 RchiOBHm_Chr7g0228161
rosa_laevigata	RLG00000001583 RLG00000035426
rosa_multiflora	Rmu_sc0001366.1_g000036 Rmu_sc0012031.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019570 Rroxscaffold_3G00231350 Rroxscaffold_4G00312740
rosa_rugosa	Rorug05G0337000 Rorug07G0246200
rosa_samantha	Rh5BG411700 Rh5CG436700 Rh5DG426100 Rh7BG381600 Rh7CG418500 Rh7DG396400
rosa_wichuraiana	Rw5G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AasI	GACNNNNNNGTC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	2 cut(s)	186, 312
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	4 cut(s)	268, 273, 395, 398
AcyI	GRCGYC	2 cut(s)	195, 309
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	302, 324
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	128, 146, 445
AluBI	AGCT	2 cut(s)	102, 280
AluI	AGCT	2 cut(s)	102, 280
Alw21I	GWGCWC	2 cut(s)	104, 282
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	59, 344, 370
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	139, 270, 292
AvaII	GGWCC	2 cut(s)	270, 292
AxyI	CCTNAGG	1 cut(s)	468
BanII	GRGCYC	2 cut(s)	104, 282
Bbv12I	GWGCWC	2 cut(s)	104, 282
BbvI	GCAGC	3 cut(s)	46, 356, 357
BccI	CCATC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BclI	TGATCA	1 cut(s)	405
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	24, 95
BisI	GCNGC	4 cut(s)	60, 345, 371, 396
BlsI	GCNGC	4 cut(s)	61, 346, 372, 397
Bme18I	GGWCC	2 cut(s)	270, 292
BmgT120I	GGNCC	3 cut(s)	139, 270, 292
BmiI	GGNNCC	1 cut(s)	293
BoxI	GACNNNNGTC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	2 cut(s)	195, 309
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	3 cut(s)	278, 440, 494
BseXI	GCAGC	3 cut(s)	46, 356, 357
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	104, 282
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	182, 305
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	182, 305
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	104, 282
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	331, 405
BspACI	CCGC	4 cut(s)	268, 273, 395, 398
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	2 cut(s)	28, 99
BsrBI	CCGCTC	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	331, 405
BssNI	GRCGYC	2 cut(s)	195, 309
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	123, 471
BstACI	GRCGYC	2 cut(s)	195, 309
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	385, 389, 393
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	334, 408
BstMBI	GATC	2 cut(s)	331, 405
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	24, 95
BstV1I	GCAGC	3 cut(s)	46, 356, 357
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	3 cut(s)	385, 389, 393
Cfr13I	GGNCC	3 cut(s)	139, 270, 292
CpoI	CGGWCCG	1 cut(s)	270
CseI	GACGC	2 cut(s)	172, 184
Csp6I	GTAC	2 cut(s)	301, 323
CspI	CGGWCCG	1 cut(s)	270
CviAII	CATG	3 cut(s)	34, 166, 403
CviJI	RGCY	9 cut(s)	102, 116, 140, 230, 280, 347, 370, 383, 506
CviKI_1	RGCY	9 cut(s)	102, 116, 140, 230, 280, 347, 370, 383, 506
CviQI	GTAC	2 cut(s)	301, 323
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	333, 407
DpnII	GATC	2 cut(s)	331, 405
DraIII	CACNNNGTG	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	123, 471
EarI	CTCTTC	2 cut(s)	123, 471
EciI	GGCGGA	1 cut(s)	413
Ecl136II	GAGCTC	2 cut(s)	102, 280
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	104, 282
Eco47I	GGWCC	2 cut(s)	270, 292
Eco53kI	GAGCTC	2 cut(s)	102, 280
Eco81I	CCTNAGG	1 cut(s)	468
EcoICRI	GAGCTC	2 cut(s)	102, 280
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	104, 282
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	37, 169, 406
FaiI	YATR	6 cut(s)	35, 89, 167, 338, 362, 404
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	182, 305
FatI	CATG	3 cut(s)	33, 165, 402
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	186, 312
Fnu4HI	GCNGC	4 cut(s)	60, 345, 371, 396
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	104, 282
Fsp4HI	GCNGC	4 cut(s)	60, 345, 371, 396
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	60, 345, 371, 396
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	2 cut(s)	172, 184
Hin1I	GRCGYC	2 cut(s)	195, 309
Hin1II	CATG	3 cut(s)	37, 169, 406
HincII	GTYRAC	2 cut(s)	187, 313
HindII	GTYRAC	2 cut(s)	187, 313
HinfI	GANTC	4 cut(s)	146, 418, 430, 484
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	187, 313
Hpy188I	TCNGA	3 cut(s)	106, 357, 489
Hpy188III	TCNNGA	4 cut(s)	283, 422, 451, 467
Hpy8I	GTNNAC	2 cut(s)	187, 313
Hpy99I	CGWCG	3 cut(s)	188, 311, 314
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	3 cut(s)	258, 309, 321
HpyCH4V	TGCA	4 cut(s)	26, 62, 97, 249
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	3 cut(s)	258, 309, 321
Hsp92I	GRCGYC	2 cut(s)	195, 309
Hsp92II	CATG	3 cut(s)	37, 169, 406
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	331, 405
LmnI	GCTCC	2 cut(s)	107, 265
LpnPI	CCDG	9 cut(s)	36, 69, 107, 201, 329, 359, 401, 435, 480
Lsp1109I	GCAGC	3 cut(s)	46, 356, 357
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	3 cut(s)	258, 309, 321
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	333, 407
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	2 cut(s)	331, 405
MboII	GAAGA	6 cut(s)	88, 91, 94, 140, 485, 488
MhlI	GDGCHC	2 cut(s)	104, 282
MluCI	AATT	2 cut(s)	12, 156
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	106, 124, 166, 210, 256, 418, 463, 472
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	331, 405
NlaIII	CATG	3 cut(s)	37, 169, 406
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 318
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	146, 430, 484
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	61, 346, 372, 397
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	104, 282
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	139, 270, 292
PstI	CTGCAG	2 cut(s)	28, 99
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	302, 324
RsaNI	GTAC	2 cut(s)	301, 323
Rsr2I	CGGWCCG	1 cut(s)	270
RsrII	CGGWCCG	1 cut(s)	270
SacI	GAGCTC	2 cut(s)	104, 282
SalI	GTCGAC	2 cut(s)	185, 311
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	4 cut(s)	60, 345, 371, 396
Sau3AI	GATC	2 cut(s)	331, 405
Sau96I	GGNCC	3 cut(s)	139, 270, 292
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	2 cut(s)	104, 282
SetI	ASST	8 cut(s)	104, 135, 220, 237, 261, 282, 312, 324
SfcI	CTRYAG	2 cut(s)	24, 95
SinI	GGWCC	2 cut(s)	270, 292
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	12, 156
SsiI	CCGC	4 cut(s)	268, 273, 395, 398
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	2 cut(s)	104, 282
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	3 cut(s)	261, 312, 324
TaqI	TCGA	4 cut(s)	74, 186, 306, 312
TasI	AATT	2 cut(s)	12, 156
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	146, 430, 484
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	59, 344, 370
Tsp45I	GTSAC	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	270, 292
XmiI	GTMKAC	2 cut(s)	186, 312
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.