Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004940

Physical Location & Seq

Genomic Coordinates Reverse (-)

14332763 .. 14334343

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGAAAACACGTGGAATGGGAGCTGCTCGTAAGCTCAAGACCCACCGCAGGAATCAGAGGTGGGCGGACAAGTCGTACAAGAAGTCCCACCTTGGAAATGAATGGAAAAAGCCATTCTCTGGTTCATCTCATGCCAAAGGCATTGTCCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCCGCTATTAGAAAGTGCGCTCGTGTTCAGCTGATCAAAAATGGTAAGAAGATTGCTGCTTTTGTACCCAACGATGGTTGCTTGAACTACATCGAGGAAAATGATGAGGTGTTGATTGCTGGATTCGGACGGAAGGGCCACGCTGTGGGAGATATTCCCGGAGTCAGGTTCAAGGTTGTGAAGGTATCCGGTGTCTCTCTCCTGGCCCTCTTCAAGGAGAAAAAGGAAAAGCCAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

10.37

Isoelectric Point (pI)

19.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02960
fragaria_vesca	FvH4_3g33640 FvH4_5g32110
malus_domestica	MD01G1131500.v1.1 MD03G1110100.v1.1 MD07G1179600.v1.1 MD11G1123500.v1.1
prunus_persica	Prupe.6G092700_v2.0.a1
pyrus_communis	pycom01g14030 pycom07g17310 pycom11g10430
rosa_chinensis	RchiOBHm_Chr1g0342271 RchiOBHm_Chr5g0061071 RchiOBHm_Chr7g0228161
rosa_laevigata	RLG00000001583 RLG00000035426
rosa_multiflora	Rmu_sc0001366.1_g000036 Rmu_sc0012031.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019570 Rroxscaffold_3G00231350 Rroxscaffold_4G00312740
rosa_rugosa	Rorug05G0337000 Rorug07G0246200
rosa_samantha	Rh5BG411700 Rh5CG436700 Rh5DG426100 Rh7BG381600 Rh7CG418500 Rh7DG396400
rosa_wichuraiana	Rw5G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	122, 331
AciI	CCGC	3 cut(s)	49, 68, 189
AcvI	CACGTG	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	2 cut(s)	80, 252
AfiI	CCNNNNNNNGG	6 cut(s)	51, 122, 260, 331, 351, 400
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	271, 358, 400
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	3 cut(s)	26, 37, 217
AluI	AGCT	3 cut(s)	26, 37, 217
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	322, 390
ApeKI	GCWGC	3 cut(s)	26, 178, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	322, 391
AsuC2I	CCSGG	1 cut(s)	345
BauI	CACGAG	1 cut(s)	207
BbrPI	CACGTG	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	13, 190, 229
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	27, 179, 243
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	28, 180, 244
Bme1390I	CCNGG	2 cut(s)	345, 389
BmgT120I	GGNCC	2 cut(s)	322, 391
BmrFI	CCNGG	2 cut(s)	345, 389
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	94, 419
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 122, 260, 331, 351, 400
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	94, 419
BseLI	CCNNNNNNNGG	6 cut(s)	51, 122, 260, 331, 351, 400
BseXI	GCAGC	3 cut(s)	13, 190, 229
BshFI	GGCC	2 cut(s)	324, 392
BsiSI	CCGG	2 cut(s)	345, 375
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	6 cut(s)	51, 122, 260, 331, 351, 400
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	324, 392
Bsp143I	GATC	1 cut(s)	219
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	3 cut(s)	49, 68, 189
BspANI	GGCC	2 cut(s)	324, 392
BssECI	CCNNGG	2 cut(s)	94, 419
BssMI	GATC	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	94, 419
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	343, 387
BstV1I	GCAGC	3 cut(s)	13, 190, 229
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	324, 392
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	322, 391
Csp6I	GTAC	2 cut(s)	79, 251
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	9 cut(s)	26, 37, 115, 173, 181, 217, 324, 392, 418
CviKI_1	RGCY	9 cut(s)	26, 37, 115, 173, 181, 217, 324, 392, 418
CviQI	GTAC	2 cut(s)	79, 251
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DraIII	CACNNNGTG	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	94, 419
Eco72I	CACGTG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	2 cut(s)	94, 419
ErhI	CCWWGG	2 cut(s)	94, 419
FaeI	CATG	1 cut(s)	137
FaiI	YATR	1 cut(s)	135
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	27, 179, 243
Fsp4HI	GCNGC	3 cut(s)	27, 179, 243
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	27, 179, 243
HaeIII	GGCC	2 cut(s)	324, 392
HapII	CCGG	2 cut(s)	345, 375
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	55, 309, 348
HpaII	CCGG	2 cut(s)	345, 375
Hpy188I	TCNGA	2 cut(s)	60, 314
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	313, 361
HpyCH4IV	ACGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	37, 108, 291, 337, 358, 374, 388, 401
Lsp1109I	GCAGC	3 cut(s)	13, 190, 229
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	13
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	247, 388
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	54, 163, 274, 286, 404
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	345, 375
MspR9I	CCNGG	2 cut(s)	345, 389
MvaI	CCWGG	1 cut(s)	389
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	55, 309
PflMI	CCANNNNNTGG	2 cut(s)	122, 331
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	28, 180, 244
PleI	GAGTC	1 cut(s)	356
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	387
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	322, 391
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	80, 252
RsaNI	GTAC	2 cut(s)	79, 251
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	3 cut(s)	27, 179, 243
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	2 cut(s)	322, 391
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	345, 389
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	3 cut(s)	49, 68, 189
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	343, 387
StyI	CCWWGG	2 cut(s)	94, 419
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	55, 309
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseI	GCWGC	3 cut(s)	26, 178, 242
TspDTI	ATGAA	2 cut(s)	117, 117
TspGWI	ACGGA	1 cut(s)	331
Van91I	CCANNNNNTGG	2 cut(s)	122, 331
XagI	CCTNNNNNAGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.