AT5G05180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004912
Physical Location & Seq
Forward (+)
1536057 .. 1538614
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05180.3

Sequence Viewer

Length: 1299 bp
ATGGATTTTACAACAGTTGAGGTCCCAGATGAGTGGCCACATAATTCGAATTCCTTTGTGGACATCTCAACAGATCACAATGGATCTTCACCTCCTGTAACTCCAAAGTCTGATACAGTAGCTTCCAACTTTGACCAAGGAAGTTCTGATGTTTCTGGCAATCATGATTCTAACTCTTCTTATTCCGATTTAGATTCGGACACGGAGGCCTTTTACTCATCTTTTAACCATCACCTCGTATCACCAGGGTCAATGGATAGCCATGACTTATCCCCGGAGAAACAAATGAGTTATGAAGAATTGATGAAGAAATATGTCCAGTGTGAAGAAGAGCTTAGGACTACGAGTTTGAAACTTCAAGAATTTGAGCAAGAGATTGAGAAACTAAAGGAGACCGAGAAAAAAGAATCGGTTGTTCTGTTTGGCGAGTATCTACGTGGTGAGCGAGAAATCGCACAAGGAGAAATTGCGATTAGGGACATAGCTATTGAGACTGAGAGAAAGCGAGTTCTCGAGGTGCAAAGACAGGTGGTTGATTTGGAAACTGAGCTTTCAGACTTAAGTTTCAAATTTGAGCATCTAGTGAATGAGCATGAGGTGAGTAGGGACTGTTTAGATGTGTCATTTTCTGAAATCTCTAAGCTAAGGGAAATGTTGTGTGATTGTCAGCAAAATTTCTCTATTGAGAAAACAAAACTGGTAGATCAGATAAAGCATTCTGAGGCAGAGAAAATGGAGATGCAGAGGAAAGAGGTTGAGTTGCAAGCTGAAATCAGTGCATTGAAGACAGACTTGGCCACACGTGGTGAGCATATTGAAGCATTAAACAAAGATTTCGACAAGCACAAGCTGAGGTACGACATGTTAATGGCAGAGAAAGACGGAGTATGTGCTGAAGTAGACAATCTAAAAGCAGAGATGAGATCAAGAGACATCCAAATTCAGCAAATGGAGGAGCAACTTAACCAGCTGGTCTATAAGCAGACAGAGCTTGTGTCTGAATCAGGAAATGCCAAGAACACTGTTGAGGAACTGAAAGCTGTGGTTAAAGAACTGGAGATTGAAGTAGAGCTGCAGAGTAAGGCCAAGAAAACTGTGGAGGAACTGAGAGCTACGGTCTGGGAAATGGAGAAGCATGCAGAGTTGCAGAGGAATGCGATATCACAAGGAGAGGAAGAGAAACGAGAGGCGATTAGACAGCTTTGTTTCTCTCTGGATCATTACAAAAGCGGATATAAACAGCTTTTGTGGTATCTTTCGGGCAATAACCAGCAACATCAAACAACCATGGTCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 KIP1

Protein Analysis

432

Amino Acids

49.88

Weight (kDa)

4.78

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 900
AciI CCGC 1 cut(s) 1230
AclWI GGATC 2 cut(s) 91, 1224
AcoI YGGCCR 2 cut(s) 35, 795
AcsI RAATTY 5 cut(s) 49, 362, 569, 673, 939
AcuI CTGAAG 1 cut(s) 915
AcvI CACGTG 1 cut(s) 803
AdeI CACNNNGTG 1 cut(s) 806
AfaI GTAC 1 cut(s) 857
AflII CTTAAG 1 cut(s) 559
AflIII ACRYGT 2 cut(s) 800, 861
AgsI TTSAA 6 cut(s) 352, 359, 568, 784, 818, 1064
AjnI CCWGG 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
Alw26I GTCTC 3 cut(s) 386, 485, 924
AlwI GGATC 2 cut(s) 91, 1224
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 4 cut(s) 35, 207, 795, 1083
ApeKI GCWGC 1 cut(s) 1072
ApoI RAATTY 5 cut(s) 49, 362, 569, 673, 939
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 6 cut(s) 81, 224, 234, 452, 610, 818
AsuII TTCGAA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 1 cut(s) 22
BalI TGGCCA 2 cut(s) 37, 797
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 791
BbvCI CCTCAGC 1 cut(s) 851
BbvI GCAGC 1 cut(s) 1059
BccI CCATC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 386, 485, 924
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 1073
BfrI CTTAAG 1 cut(s) 559
BisI GCNGC 1 cut(s) 1073
BlsI GCNGC 1 cut(s) 1074
Bme1390I CCNGG 2 cut(s) 246, 275
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 246, 275
BmsI GCATC 2 cut(s) 586, 729
BpiI GAAGAC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 1076
Bpu10I CCTNAGC 3 cut(s) 335, 644, 851
Bpu14I TTCGAA 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 275
BsaAI YACGTR 2 cut(s) 437, 803
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 4 cut(s) 136, 245, 273, 1287
Bse1I ACTGG 3 cut(s) 319, 702, 1059
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 136, 245, 273, 1287
BseGI GGATG 1 cut(s) 933
BseMII CTCAG 5 cut(s) 486, 537, 711, 842, 1097
BseNI ACTGG 3 cut(s) 319, 702, 1059
BseRI GAGGAG 1 cut(s) 968
BseXI GCAGC 1 cut(s) 1059
BshFI GGCC 4 cut(s) 37, 209, 797, 1085
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 3 cut(s) 8, 491, 620
BsmAI GTCTC 3 cut(s) 386, 485, 924
BsmFI GGGAC 3 cut(s) 8, 491, 620
BsmI GAATGC 2 cut(s) 715, 1159
BsnI GGCC 4 cut(s) 37, 209, 797, 1085
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 5 cut(s) 73, 83, 703, 923, 1216
Bsp19I CCATGG 1 cut(s) 1287
BspACI CCGC 1 cut(s) 1230
BspANI GGCC 4 cut(s) 37, 209, 797, 1085
BspCNI CTCAG 5 cut(s) 487, 538, 712, 843, 1098
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 1077
BspPI GGATC 2 cut(s) 91, 1224
BspQI GCTCTTC 1 cut(s) 324
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 386
BsrI ACTGG 3 cut(s) 319, 702, 1059
BssECI CCNNGG 4 cut(s) 136, 245, 273, 1287
BssMI GATC 5 cut(s) 73, 83, 703, 923, 1216
BssT1I CCWWGG 2 cut(s) 136, 1287
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 6 cut(s) 16, 118, 611, 1024, 1096, 1117
Bst6I CTCTTC 3 cut(s) 181, 324, 1170
BstAFI CTTAAG 1 cut(s) 559
BstBAI YACGTR 2 cut(s) 437, 803
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 765, 1137
BstDEI CTNAG 8 cut(s) 335, 495, 546, 639, 644, 720, 851, 1106
BstDSI CCRYGG 1 cut(s) 1287
BstF5I GGATG 1 cut(s) 933
BstKTI GATC 5 cut(s) 76, 86, 706, 926, 1219
BstMAI GTCTC 3 cut(s) 386, 485, 924
BstMBI GATC 5 cut(s) 73, 83, 703, 923, 1216
BstMWI GCNNNNNNNGC 1 cut(s) 988
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 2 cut(s) 865, 1139
BstSCI CCNGG 2 cut(s) 244, 273
BstSFI CTRYAG 1 cut(s) 1073
BstV1I GCAGC 1 cut(s) 1059
BstV2I GAAGAC 1 cut(s) 791
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 4 cut(s) 37, 209, 797, 1085
BtgI CCRYGG 1 cut(s) 1287
BtsCI GGATG 1 cut(s) 933
BtsIMutI CAGTG 3 cut(s) 326, 781, 1020
Cac8I GCNNGC 2 cut(s) 765, 1137
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 856
CviAII CATG 6 cut(s) 164, 263, 593, 862, 1136, 1288
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 8 cut(s) 335, 495, 546, 639, 644, 720, 851, 1106
DpnI GATC 5 cut(s) 75, 85, 705, 925, 1218
DpnII GATC 5 cut(s) 73, 83, 703, 923, 1216
DraIII CACNNNGTG 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 35, 795
Eam1104I CTCTTC 3 cut(s) 181, 324, 1170
EarI CTCTTC 3 cut(s) 181, 324, 1170
Eco130I CCWWGG 2 cut(s) 136, 1287
Eco147I AGGCCT 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 1161
Eco47I GGWCC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 915
Eco72I CACGTG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 1161
EcoT14I CCWWGG 2 cut(s) 136, 1287
ErhI CCWWGG 2 cut(s) 136, 1287
FaeI CATG 6 cut(s) 167, 266, 596, 865, 1139, 1291
FalI AAGNNNNNCTT 4 cut(s) 318, 350, 776, 808
FaqI GGGAC 3 cut(s) 8, 491, 620
FatI CATG 6 cut(s) 163, 262, 592, 861, 1135, 1287
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 1 cut(s) 1073
FokI GGATG 1 cut(s) 920
Fsp4HI GCNGC 1 cut(s) 1073
FspBI CTAG 1 cut(s) 581
GluI GCNGC 1 cut(s) 1073
GsuI CTGGAG 1 cut(s) 1076
HaeIII GGCC 4 cut(s) 37, 209, 797, 1085
HapII CCGG 1 cut(s) 275
Hin1II CATG 6 cut(s) 167, 266, 596, 865, 1139, 1291
HinfI GANTC 4 cut(s) 167, 194, 407, 1001
HpaII CCGG 1 cut(s) 275
HphI GGTGA 6 cut(s) 81, 224, 234, 452, 610, 818
Hpy166II GTNNAC 2 cut(s) 61, 901
Hpy188I TCNGA 9 cut(s) 112, 148, 187, 199, 556, 631, 708, 721, 1000
Hpy188III TCNNGA 6 cut(s) 164, 359, 512, 927, 1005, 1214
Hpy8I GTNNAC 2 cut(s) 61, 901
HpyCH4III ACNGT 6 cut(s) 16, 118, 611, 1024, 1096, 1117
HpyCH4IV ACGT 2 cut(s) 436, 802
HpyCH4V TGCA 7 cut(s) 520, 742, 763, 779, 1075, 1139, 1147
HpyF10VI GCNNNNNNNGC 1 cut(s) 988
HpyF3I CTNAG 8 cut(s) 335, 495, 546, 639, 644, 720, 851, 1106
HpySE526I ACGT 2 cut(s) 436, 802
Hsp92II CATG 6 cut(s) 167, 266, 596, 865, 1139, 1291
Kzo9I GATC 5 cut(s) 73, 83, 703, 923, 1216
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 1 cut(s) 1059
LweI GCATC 2 cut(s) 586, 729
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 436, 802
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 75, 85, 705, 925, 1218
MboI GATC 5 cut(s) 73, 83, 703, 923, 1216
MboII GAAGA 8 cut(s) 78, 168, 308, 319, 338, 341, 796, 1187
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 2 cut(s) 37, 797
MluCI AATT 8 cut(s) 43, 49, 299, 362, 465, 569, 673, 939
MluNI TGGCCA 2 cut(s) 37, 797
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 2 cut(s) 37, 797
MscI TGGCCA 2 cut(s) 37, 797
MseI TTAA 6 cut(s) 225, 560, 824, 866, 963, 1047
MslI CAYNNNNRTG 2 cut(s) 866, 1292
Msp20I TGGCCA 2 cut(s) 37, 797
MspA1I CMGCKG 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 559
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 246, 275
Mva1269I GAATGC 2 cut(s) 715, 1159
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 988
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 1287
NdeII GATC 5 cut(s) 73, 83, 703, 923, 1216
NlaIII CATG 6 cut(s) 167, 266, 596, 865, 1139, 1291
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 2 cut(s) 865, 1139
NspV TTCGAA 1 cut(s) 47
PaeI GCATGC 1 cut(s) 1139
PaeR7I CTCGAG 1 cut(s) 512
PagI TCATGA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 442
PctI GAATGC 2 cut(s) 715, 1159
PfeI GAWTC 4 cut(s) 167, 194, 407, 1001
PkrI GCNGC 1 cut(s) 1074
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
Ppu21I YACGTR 2 cut(s) 437, 803
PpuMI RGGWCCY 1 cut(s) 22
PscI ACATGT 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 1 cut(s) 803
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 22
PspPPI RGGWCCY 1 cut(s) 22
PstI CTGCAG 1 cut(s) 1077
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
RseI CAYNNNNRTG 2 cut(s) 866, 1292
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 6 cut(s) 225, 560, 824, 866, 963, 1047
SatI GCNGC 1 cut(s) 1073
Sau3AI GATC 5 cut(s) 73, 83, 703, 923, 1216
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 246, 275
SfaNI GCATC 2 cut(s) 586, 729
SfcI CTRYAG 1 cut(s) 1073
Sfr274I CTCGAG 1 cut(s) 512
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 866, 1292
SmlI CTYRAG 2 cut(s) 512, 559
SmoI CTYRAG 2 cut(s) 512, 559
SphI GCATGC 1 cut(s) 1139
Sse9I AATT 8 cut(s) 43, 49, 299, 362, 465, 569, 673, 939
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 1230
SspMI CTAG 1 cut(s) 581
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 244, 273
StyI CCWWGG 2 cut(s) 136, 1287
TaaI ACNGT 6 cut(s) 16, 118, 611, 1024, 1096, 1117
TaiI ACGT 2 cut(s) 439, 805
TaqI TCGA 3 cut(s) 47, 513, 837
TaqII GACCGA 1 cut(s) 410
TasI AATT 8 cut(s) 43, 49, 299, 362, 465, 569, 673, 939
TfiI GAWTC 4 cut(s) 167, 194, 407, 1001
Tru1I TTAA 6 cut(s) 225, 560, 824, 866, 963, 1047
Tru9I TTAA 6 cut(s) 225, 560, 824, 866, 963, 1047
TscAI CASTG 3 cut(s) 326, 781, 1027
TseI GCWGC 1 cut(s) 1072
TspDTI ATGAA 2 cut(s) 309, 320
TspGWI ACGGA 2 cut(s) 218, 897
TspRI CASTG 3 cut(s) 326, 781, 1027
Vha464I CTTAAG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 5 cut(s) 49, 362, 569, 673, 939
XceI RCATGY 2 cut(s) 865, 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 1093
XhoI CTCGAG 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.