pycom07g21320

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
23082261 .. 23083900
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21320.2

Sequence Viewer

Length: 1524 bp
ATGTGGCTGGTAGAAAATCTTGAAGAGATGGACCAGAGCATTAAGCAAATGATGAAGCTGATCAAAGAAGATGGTGATTCTTTGCCCAACAAAGACCAAACGTTTTTGCAGAAGAAGCCGGAATTAGTTCAGGAATTTCAACGGATGTATCGTTCACTGGCCGGGTGCTATGAATACTTGAACAAAGCACCTAAGGGGTTTGCAGATTCTGAATATGGTTTCAACCAAGGCTCTCCTCTGCTGACTCCCGATGCTAGAAATGGTTTGCGGAAATCCGACGATCAAGTTGTTGGTTTTGATATATCACTAAGCTCAGATGGTTCTAGTCCAGCTCTTACTCTAAAGAATAGCGCTGAATCGTCTTCATCTTCATCATTGGGATCCGAGTCAGATTCTCCTAATTCCCCGGTCAGCAATTACTTGGTTCCACCTCCGAGCGCTGATTTTTACAGTCAGGGATGGCAGCAGAAGATTGCTGAGCTTGAAACTGAACTATCTAGCTTGAAAGAGAAGCTCCAGGTGAAGGAGTCTGATCTTACAATGGAGAAAATGCGTGTCTTCGAGCTGCAAGAACAGATAGTTGAGTTGGAAAATCGTGCATCAGACAGAGATAATGAGATTCGGAAATTGATGGAGGACTTGGAAGTGACTAAAGAAAGGCTTAAGGGGTCAGACGAAGAGATTGCGAATTTGAAGCATGAACTTGCCGATAGAATTTCCGAAGGCGCTGATCAAATGCAAGGTCTTGAATCTCAACTTGACTTGGAGAGAAAGCATGTCTCGGAGCTGCAGGAGAGGATTGTGAGGTACAATGCTGACATATTCGGCCGCGATCTTGAGGTGATGCAGCTGAAGAGCGCATTGCATGATGCACAGGAACAATTCTCGCTAGAGAAAGCAGACCTGCAGGCTGACATTTCAAGTTTTGCAGCGAAACAAATTGTCTTGGACACGAGACTCGAAGAATTGAGTTTGATAAACAAGAGGTTAGAAGATGAAATAAGGCAATGTGAAACGGATAAGATGGAAATGGAAAGACTGCATGCTGTCTATGAGATCGCATTGCAAGATGATATAAGCCGCCTGAAGGTAGAAGTTGCTGATAAAAATGGACATGTGGAAGCTGTAAATAAAGACTTGGACAGGTTTAAACTGAAATGTGACATGCTGATGGCGGAGAAAGACGAGCTCAATGCTAGGGCTCAAACGCTCATGGCGAACGTGAGTTACCGCGACAATCAGATTCAGGAAATGGCGGGACATCTTAGTCGGTTACAAACAGAACACGAGGGTCTGATTGTTGGATCCGAAAGTGCGCGTAGGCTAGTAGATGAGCTGAAATCAAGAGTGGAGGAGTTGCAGCAAGAGGTGAAAAGGCAGAGTGTTTTGATCTCGGATGGGGCTGAGGAGAAACGAGAGGTGATCCGGCAGCTTTGTTTCTCGCTGGAGTACTACAGGAGTGGATACCAAGAGCTCCGGCAAGCATTTACCGGGCACAGGCGGCGTGCCGTTGCAGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

508

Amino Acids

57.97

Weight (kDa)

4.84

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1266
Acc36I ACCTGC 1 cut(s) 912
AccII CGCG 3 cut(s) 831, 1233, 1318
AciI CCGC 7 cut(s) 268, 829, 1081, 1175, 1231, 1256, 1501
AclI AACGTT 1 cut(s) 101
AclWI GGATC 5 cut(s) 375, 388, 1299, 1312, 1417
AcoI YGGCCR 2 cut(s) 159, 826
AcsI RAATTY 3 cut(s) 134, 688, 714
AcuI CTGAAG 2 cut(s) 872, 1106
AfaI GTAC 2 cut(s) 809, 1451
AfeI AGCGCT 2 cut(s) 352, 439
AfiI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 1114
AgsI TTSAA 9 cut(s) 23, 140, 181, 223, 485, 505, 694, 749, 921
AjnI CCWGG 1 cut(s) 516
AloI GAACNNNNNNTCC 2 cut(s) 136, 168
Alw21I GWGCWC 2 cut(s) 1191, 1476
Alw26I GTCTC 2 cut(s) 784, 949
AlwI GGATC 5 cut(s) 375, 388, 1299, 1312, 1417
AlwNI CAGNNNCTG 1 cut(s) 209
Aor51HI AGCGCT 2 cut(s) 352, 439
AoxI GGCC 2 cut(s) 159, 826
ApeKI GCWGC 9 cut(s) 463, 565, 787, 847, 929, 1360, 1429, 1514, 1517
ApoI RAATTY 3 cut(s) 134, 688, 714
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
Asp700I GAANNNNTTC 1 cut(s) 126
AspLEI GCGC 5 cut(s) 353, 440, 728, 860, 1318
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 3 cut(s) 163, 407, 1492
AsuHPI GGTGA 5 cut(s) 86, 532, 853, 1381, 1432
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 1497
BaeI ACNNNNGTAYC 2 cut(s) 131, 164
BamHI GGATCC 2 cut(s) 380, 1304
BanII GRGCYC 3 cut(s) 1191, 1204, 1476
BauI CACGAG 2 cut(s) 952, 1286
BbsI GAAGAC 2 cut(s) 354, 550
Bbv12I GWGCWC 2 cut(s) 1191, 1476
BbvCI CCTCAGC 1 cut(s) 1404
BbvI GCAGC 8 cut(s) 475, 552, 774, 859, 941, 1372, 1441, 1504
BccI CCATC 8 cut(s) 22, 65, 311, 453, 625, 1018, 1165, 1391
BceAI ACGGC 1 cut(s) 1493
BcgI CGANNNNNNTGC 4 cut(s) 665, 699, 1175, 1209
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 1457
BclI TGATCA 2 cut(s) 60, 730
BcnI CCSGG 3 cut(s) 163, 407, 1492
BcoDI GTCTC 2 cut(s) 784, 949
BfaI CTAG 6 cut(s) 255, 324, 498, 890, 1197, 1325
BfmI CTRYAG 3 cut(s) 788, 905, 1453
BfoI RGCGCY 3 cut(s) 354, 441, 729
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 912
BfuI GTATCC 1 cut(s) 1457
BlpI GCTNAGC 1 cut(s) 477
BmcAI AGTACT 1 cut(s) 1451
Bme1390I CCNGG 4 cut(s) 163, 407, 518, 1492
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 382, 426, 1306
BmrFI CCNGG 4 cut(s) 163, 407, 518, 1492
BmsI GCATC 4 cut(s) 241, 608, 834, 859
BpiI GAAGAC 2 cut(s) 354, 550
BpmI CTGGAG 2 cut(s) 500, 1466
Bpu10I CCTNAGC 1 cut(s) 1404
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 3 cut(s) 163, 407, 1492
BsaJI CCNNGG 2 cut(s) 226, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
Bse1I ACTGG 1 cut(s) 162
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 3 cut(s) 860, 1013, 1061
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 226, 405
BseGI GGATG 3 cut(s) 150, 464, 1402
BseLI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
BseMI GCAATG 3 cut(s) 860, 1013, 1061
BseMII CTCAG 3 cut(s) 327, 468, 1395
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 3 cut(s) 225, 1367, 1421
BseSI GKGCMC 1 cut(s) 1497
BseX3I CGGCCG 1 cut(s) 826
BseXI GCAGC 8 cut(s) 475, 552, 774, 859, 941, 1372, 1441, 1504
Bsh1236I CGCG 3 cut(s) 831, 1233, 1318
Bsh1285I CGRYCG 1 cut(s) 829
BshFI GGCC 2 cut(s) 161, 828
BsiEI CGRYCG 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 1191, 1476
BsiSI CCGG 6 cut(s) 119, 162, 407, 1426, 1477, 1491
BslFI GGGAC 1 cut(s) 1272
BslI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
BsmAI GTCTC 2 cut(s) 784, 949
BsmFI GGGAC 1 cut(s) 1272
BsnI GGCC 2 cut(s) 161, 828
Bsp1286I GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 7 cut(s) 268, 829, 1081, 1175, 1231, 1256, 1501
BspANI GGCC 2 cut(s) 161, 828
BspCNI CTCAG 3 cut(s) 326, 469, 1396
BspFNI CGCG 3 cut(s) 831, 1233, 1318
BspLI GGNNCC 3 cut(s) 382, 426, 1306
BspMAI CTGCAG 2 cut(s) 792, 909
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 5 cut(s) 375, 388, 1299, 1312, 1417
BspQI GCTCTTC 1 cut(s) 848
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 3 cut(s) 860, 1013, 1061
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 226, 405
BssSI CACGAG 2 cut(s) 952, 1286
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 2 cut(s) 952, 1286
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 3 cut(s) 18, 672, 848
BstAFI CTTAAG 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 909, 1044, 1482, 1506
BstDEI CTNAG 6 cut(s) 192, 308, 313, 477, 1265, 1404
BstF5I GGATG 3 cut(s) 150, 464, 1402
BstFNI CGCG 3 cut(s) 831, 1233, 1318
BstH2I RGCGCY 3 cut(s) 354, 441, 729
BstHHI GCGC 5 cut(s) 353, 440, 728, 860, 1318
BstMAI GTCTC 2 cut(s) 784, 949
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 3 cut(s) 115, 1501, 1514
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 4 cut(s) 779, 1046, 1118, 1168
BstSCI CCNGG 4 cut(s) 161, 405, 516, 1490
BstSFI CTRYAG 3 cut(s) 788, 905, 1453
BstSLI GKGCMC 1 cut(s) 1497
BstUI CGCG 3 cut(s) 831, 1233, 1318
BstV1I GCAGC 8 cut(s) 475, 552, 774, 859, 941, 1372, 1441, 1504
BstV2I GAAGAC 2 cut(s) 354, 550
BstX2I RGATCY 2 cut(s) 380, 1304
BstYI RGATCY 2 cut(s) 380, 1304
BstZI CGGCCG 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 192
BsuI GTATCC 1 cut(s) 1457
BsuRI GGCC 2 cut(s) 161, 828
BtsCI GGATG 3 cut(s) 150, 464, 1402
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 4 cut(s) 909, 1044, 1482, 1506
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 5 cut(s) 353, 440, 728, 860, 1318
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 808, 1450
CviAII CATG 8 cut(s) 698, 776, 866, 1043, 1115, 1165, 1213, 1521
CviQI GTAC 2 cut(s) 808, 1450
DdeI CTNAG 6 cut(s) 192, 308, 313, 477, 1265, 1404
DraI TTTAAA 1 cut(s) 1150
DrdI GACNNNNNNGTC 1 cut(s) 1266
DseDI GACNNNNNNGTC 1 cut(s) 1266
EaeI YGGCCR 2 cut(s) 159, 826
EagI CGGCCG 1 cut(s) 826
Eam1104I CTCTTC 3 cut(s) 18, 672, 848
EarI CTCTTC 3 cut(s) 18, 672, 848
EciI GGCGGA 1 cut(s) 1190
Ecl136II GAGCTC 2 cut(s) 1189, 1474
EclXI CGGCCG 1 cut(s) 826
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 3 cut(s) 1191, 1204, 1476
Eco47I GGWCC 1 cut(s) 31
Eco47III AGCGCT 2 cut(s) 352, 439
Eco52I CGGCCG 1 cut(s) 826
Eco53kI GAGCTC 2 cut(s) 1189, 1474
Eco57I CTGAAG 2 cut(s) 872, 1106
Eco81I CCTNAGG 1 cut(s) 192
EcoICRI GAGCTC 2 cut(s) 1189, 1474
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 3 cut(s) 1191, 1204, 1476
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 8 cut(s) 701, 779, 869, 1046, 1118, 1168, 1216, 1524
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 1272
FatI CATG 8 cut(s) 697, 775, 865, 1042, 1114, 1164, 1212, 1520
FauI CCCGC 1 cut(s) 1249
FbaI TGATCA 2 cut(s) 60, 730
FokI GGATG 3 cut(s) 157, 471, 1409
FriOI GRGCYC 3 cut(s) 1191, 1204, 1476
FspBI CTAG 6 cut(s) 255, 324, 498, 890, 1197, 1325
GlaI GCGC 5 cut(s) 352, 439, 727, 859, 1317
GsuI CTGGAG 2 cut(s) 500, 1466
HaeII RGCGCY 3 cut(s) 354, 441, 729
HaeIII GGCC 2 cut(s) 161, 828
HapII CCGG 6 cut(s) 119, 162, 407, 1426, 1477, 1491
HhaI GCGC 5 cut(s) 353, 440, 728, 860, 1318
Hin1II CATG 8 cut(s) 701, 779, 869, 1046, 1118, 1168, 1216, 1524
Hin6I GCGC 5 cut(s) 351, 438, 726, 858, 1316
HinP1I GCGC 5 cut(s) 351, 438, 726, 858, 1316
HpaII CCGG 6 cut(s) 119, 162, 407, 1426, 1477, 1491
HphI GGTGA 5 cut(s) 86, 532, 853, 1381, 1432
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 7 cut(s) 20, 131, 248, 746, 836, 1247, 1344
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 517, 716, 1081
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 2 cut(s) 101, 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 1501, 1514
HpyF3I CTNAG 6 cut(s) 192, 308, 313, 477, 1265, 1404
HpySE526I ACGT 2 cut(s) 101, 1221
Hsp92II CATG 8 cut(s) 701, 779, 869, 1046, 1118, 1168, 1216, 1524
HspAI GCGC 5 cut(s) 351, 438, 726, 858, 1316
Ksp22I TGATCA 2 cut(s) 60, 730
LguI GCTCTTC 1 cut(s) 848
LmnI GCTCC 3 cut(s) 519, 784, 1479
Lsp1109I GCAGC 8 cut(s) 475, 552, 774, 859, 941, 1372, 1441, 1504
LweI GCATC 4 cut(s) 241, 608, 834, 859
MaeI CTAG 6 cut(s) 255, 324, 498, 890, 1197, 1325
MaeII ACGT 2 cut(s) 101, 1221
MaeIII GTNAC 4 cut(s) 646, 1160, 1226, 1272
MflI RGATCY 2 cut(s) 380, 1304
MhlI GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
MlyI GAGTC 4 cut(s) 238, 395, 536, 951
MmeI TCCRAC 3 cut(s) 300, 567, 1282
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 3 cut(s) 42, 663, 1149
MslI CAYNNNNRTG 1 cut(s) 1169
MspA1I CMGCKG 2 cut(s) 850, 1517
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 6 cut(s) 119, 162, 407, 1426, 1477, 1491
MspR9I CCNGG 4 cut(s) 163, 407, 518, 1492
MssI GTTTAAAC 1 cut(s) 1150
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 3 cut(s) 831, 1233, 1318
MwoI GCNNNNNNNGC 3 cut(s) 115, 1501, 1514
NciI CCSGG 3 cut(s) 163, 407, 1492
NlaIII CATG 8 cut(s) 701, 779, 869, 1046, 1118, 1168, 1216, 1524
NlaIV GGNNCC 3 cut(s) 382, 426, 1306
NmuCI GTSAC 2 cut(s) 646, 1160
NspI RCATGY 4 cut(s) 779, 1046, 1118, 1168
PaeI GCATGC 1 cut(s) 1046
PciI ACATGT 1 cut(s) 1114
PciSI GCTCTTC 1 cut(s) 848
PcsI WCGNNNNNNNCGW 2 cut(s) 148, 1214
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 7 cut(s) 77, 206, 356, 392, 619, 749, 1243
PleI GAGTC 4 cut(s) 238, 394, 535, 951
PmeI GTTTAAAC 1 cut(s) 1150
PpsI GAGTC 4 cut(s) 238, 394, 535, 951
PscI ACATGT 1 cut(s) 1114
Psp124BI GAGCTC 2 cut(s) 1191, 1476
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 3 cut(s) 382, 426, 1306
PspPI GGNCC 1 cut(s) 31
PsrI GAACNNNNNNTAC 2 cut(s) 1211, 1243
PstI CTGCAG 2 cut(s) 792, 909
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 2 cut(s) 380, 1304
PvuII CAGCTG 2 cut(s) 850, 1517
RsaI GTAC 2 cut(s) 809, 1451
RsaNI GTAC 2 cut(s) 808, 1450
RseI CAYNNNNRTG 1 cut(s) 1169
SacI GAGCTC 2 cut(s) 1191, 1476
SapI GCTCTTC 1 cut(s) 848
SaqAI TTAA 3 cut(s) 42, 663, 1149
Sau96I GGNCC 1 cut(s) 31
SbfI CCTGCAGG 1 cut(s) 909
ScaI AGTACT 1 cut(s) 1451
SchI GAGTC 4 cut(s) 238, 395, 536, 951
ScrFI CCNGG 4 cut(s) 163, 407, 518, 1492
SdaI CCTGCAGG 1 cut(s) 909
SduI GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
SfaNI GCATC 4 cut(s) 241, 608, 834, 859
SfcI CTRYAG 3 cut(s) 788, 905, 1453
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 1169
SmlI CTYRAG 2 cut(s) 662, 836
SmoI CTYRAG 2 cut(s) 662, 836
SphI GCATGC 1 cut(s) 1046
Sse8387I CCTGCAGG 1 cut(s) 909
SsiI CCGC 7 cut(s) 268, 829, 1081, 1175, 1231, 1256, 1501
SspMI CTAG 6 cut(s) 255, 324, 498, 890, 1197, 1325
SstI GAGCTC 2 cut(s) 1191, 1476
StyD4I CCNGG 4 cut(s) 161, 405, 516, 1490
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 2 cut(s) 104, 1224
TaqI TCGA 2 cut(s) 561, 960
TatI WGTACW 1 cut(s) 1449
TauI GCSGC 3 cut(s) 831, 1083, 1504
TfiI GAWTC 7 cut(s) 77, 206, 356, 392, 619, 749, 1243
Tru1I TTAA 3 cut(s) 42, 663, 1149
Tru9I TTAA 3 cut(s) 42, 663, 1149
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 2 cut(s) 646, 1160
TseI GCWGC 9 cut(s) 463, 565, 787, 847, 929, 1360, 1429, 1514, 1517
Tsp45I GTSAC 2 cut(s) 646, 1160
TspDTI ATGAA 6 cut(s) 68, 186, 354, 360, 714, 1011
TspGWI ACGGA 2 cut(s) 157, 1031
TspRI CASTG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 3 cut(s) 134, 688, 714
XceI RCATGY 4 cut(s) 779, 1046, 1118, 1168
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 6 cut(s) 255, 324, 498, 890, 1197, 1325
ZrmI AGTACT 1 cut(s) 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.