MD07G1236900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30956901 .. 30958617
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1236900.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGTTGATATGGAGAGAACAGAACTGAAGAAGTCAGATTCAGCTGGGTTGGACAATAGTATCTCTCCAGACAGTTCAATGTGGCTGGTAGAAAATCTTGAAGAGATGGGCCAGAGCATTAAGCAAATGATGAAGCTGATCAAAGAAGATGGTGATTCTTTGCCCAACAAAGATGAAACGTTTTTGCAGAAGAAGCCGGAATTAGTTCAGGAATTTCAACGGATGTATCGTTCACTGGCCGGGTGCTATCAACACTTGAACAAAGCACATAAGGGGTTTGGAGATTCTGAATATGGTTTCAACCAAGGCTCTCCTCTGCTGACTCCCGATGCTAAACATGGTTTGCGGAAATCCGACGATCAAGTTGTTGGTTTTGATATATCACTAAGCTCAGATGGTTCTAGTCCACCTCTTACTTTAAAGACTGGCGCTGAATCGTCTTCCTCTTCATCATTGGGATCCGAGTCAGATTCTCCTAATTCCCCGGTCAGCAATTACTTGGTTCCACCTCCGAGCGCTGATTTTGACAGTCAGGGATGGCAGCTGAAGATTGCTGAGCTTGAAACTGAACTATCTATCTTGAAAGAGAAGCTCCAGGTGAAGGAGTCTGATCTTACAATGGAGAAAATGCGTGTCTTCGAGCTGCAAGAACAGATAGTTGAGTTGGAAAATCGTGCATCGGACAGAGATAATGAGATTCGGAAATTGATGGAGGATTTGGAAGTGACTAAAGAAAGGCTTAAGGGGTCAGACAAAGAGATTGCGAATTTGAAGCATGAACTTGCCGATAGAATTTCCAAAGGCGCTGATCAAATGCAAGGTGTTGAATCTCAACTTGACTCGGAGAGAAAGCTTGTTTCGGAGCTGCAGGAGAGGATTGTGAGGTGCAATGCTGACATATTCGGCCGCGATCTTGAGGTGATGCAGCTGAAGAGTGCATTGCGTGAAGCACAGGAACAATTCTCGCTTGAGAAAGCAGACCTGCAGGCTGACATTTCAAGTTTTGCAGCGAAACAAATTGTCTTGGACACGAGACTCGAAGAATTGAGTTTGAGAAACAAGGGGTTAGAGGACGAAATAAAGCAATGTGAAACGGATAAGATGGAAATGGAAAGGCTTCATGCTGTCTACGAGATGGCATTGCAAGATGATATAAGCAGTCTGAAGGTAGAAGTTGCTGATAAAAATGGACATGTGGAAGCTGTAAATAAAGACTTGGACATATTTAAACTGAAATGTGACATGCTGATGGCGGAGAAAGACGAGCTCAATGCTAGGGCTCAAACGCTCATGGCGAATGTGAGTTCCCGCGACAATCAGATTCAGGAAATGGCGGGACATCTTAGTCGGTTGCAAACAGAACACGAGGGTCTGATCGTTGGATCCGAAAGTGCGTGTAGGCTAGTAGATGAGCTGAAAACAAGGGTGGAGGAGTTGCAGCAGGAGGTGAAAAGGCAGAGTGTTGTGATCTCGGACGGGGCTGAGGAGAAAAGAGAGGTGATCCGGCAGCTTTGTTTCTCGCTGGAGCACTACAGGAGGGGATACCAAGAGCTCCGCCAAGCGTTTACCGGGCACAGGCAGCGCCTAGTATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

60.34

Weight (kDa)

4.88

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 18 - 83 7.7e-17 KIP1-like protein
Tropomyosin PF00261 39 - 320 1.5e-07 Tropomyosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1344
Acc36I ACCTGC 1 cut(s) 990
AccI GTMKAC 1 cut(s) 1128
AccII CGCG 2 cut(s) 909, 1311
AciI CCGC 6 cut(s) 346, 907, 1253, 1309, 1334, 1555
AclI AACGTT 1 cut(s) 179
AclWI GGATC 5 cut(s) 453, 466, 1377, 1390, 1495
AcoI YGGCCR 2 cut(s) 237, 904
AcsI RAATTY 3 cut(s) 212, 766, 792
AcuI CTGAAG 4 cut(s) 47, 566, 950, 1184
AfeI AGCGCT 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 601, 1575
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 1192
AjnI CCWGG 1 cut(s) 594
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
Alw21I GWGCWC 3 cut(s) 1269, 1530, 1554
Alw26I GTCTC 1 cut(s) 1027
AlwI GGATC 5 cut(s) 453, 466, 1377, 1390, 1495
Aor51HI AGCGCT 1 cut(s) 517
AoxI GGCC 3 cut(s) 109, 237, 904
ApeKI GCWGC 8 cut(s) 541, 643, 865, 925, 1007, 1438, 1507, 1579
ApoI RAATTY 3 cut(s) 212, 766, 792
Asp700I GAANNNNTTC 2 cut(s) 204, 1116
AspLEI GCGC 4 cut(s) 431, 518, 806, 1584
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 3 cut(s) 241, 485, 1570
AsuHPI GGTGA 5 cut(s) 164, 610, 931, 1459, 1510
BaeGI GKGCMC 1 cut(s) 1575
BaeI ACNNNNGTAYC 4 cut(s) 43, 76, 209, 242
BamHI GGATCC 2 cut(s) 458, 1382
BanII GRGCYC 3 cut(s) 1269, 1282, 1554
BauI CACGAG 2 cut(s) 1030, 1364
BbsI GAAGAC 2 cut(s) 432, 628
Bbv12I GWGCWC 3 cut(s) 1269, 1530, 1554
BbvCI CCTCAGC 1 cut(s) 1482
BbvI GCAGC 8 cut(s) 553, 630, 852, 937, 1019, 1450, 1519, 1591
BccI CCATC 8 cut(s) 100, 143, 389, 531, 703, 1096, 1129, 1243
BcgI CGANNNNNNTGC 2 cut(s) 1253, 1287
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 1 cut(s) 1535
BclI TGATCA 2 cut(s) 138, 808
BcnI CCSGG 3 cut(s) 241, 485, 1570
BcoDI GTCTC 1 cut(s) 1027
BfaI CTAG 4 cut(s) 402, 1275, 1403, 1586
BfmI CTRYAG 3 cut(s) 866, 983, 1531
BfoI RGCGCY 4 cut(s) 432, 519, 807, 1585
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 990
BfuI GTATCC 1 cut(s) 1535
BisI GCNGC 9 cut(s) 542, 644, 866, 907, 926, 1008, 1439, 1508, 1580
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 9 cut(s) 543, 645, 867, 908, 927, 1009, 1440, 1509, 1581
Bme1390I CCNGG 4 cut(s) 241, 485, 596, 1570
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 460, 504, 1384
BmrFI CCNGG 4 cut(s) 241, 485, 596, 1570
BmsI GCATC 3 cut(s) 319, 686, 912
BpiI GAAGAC 2 cut(s) 432, 628
BpmI CTGGAG 3 cut(s) 51, 578, 1544
Bpu10I CCTNAGC 1 cut(s) 1482
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 935, 989
BpuMI CCSGG 3 cut(s) 241, 485, 1570
BsaJI CCNNGG 2 cut(s) 304, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 1575
Bse1I ACTGG 2 cut(s) 240, 430
Bse3DI GCAATG 4 cut(s) 895, 938, 1091, 1139
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 304, 483
BseGI GGATG 2 cut(s) 228, 542
BseLI CCNNNNNNNGG 2 cut(s) 601, 1575
BseMI GCAATG 4 cut(s) 895, 938, 1091, 1139
BseMII CTCAG 3 cut(s) 405, 546, 1473
BseNI ACTGG 2 cut(s) 240, 430
BseRI GAGGAG 3 cut(s) 303, 1445, 1499
BseSI GKGCMC 1 cut(s) 1575
BseX3I CGGCCG 1 cut(s) 904
BseXI GCAGC 8 cut(s) 553, 630, 852, 937, 1019, 1450, 1519, 1591
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 909, 1311
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 3 cut(s) 111, 239, 906
BsiEI CGRYCG 1 cut(s) 907
BsiHKAI GWGCWC 3 cut(s) 1269, 1530, 1554
BsiSI CCGG 5 cut(s) 197, 240, 485, 1504, 1569
BslFI GGGAC 1 cut(s) 1350
BslI CCNNNNNNNGG 2 cut(s) 601, 1575
BsmAI GTCTC 1 cut(s) 1027
BsmFI GGGAC 1 cut(s) 1350
BsnI GGCC 3 cut(s) 111, 239, 906
Bsp1286I GDGCHC 5 cut(s) 1269, 1282, 1530, 1554, 1575
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 6 cut(s) 346, 907, 1253, 1309, 1334, 1555
BspANI GGCC 3 cut(s) 111, 239, 906
BspCNI CTCAG 3 cut(s) 404, 547, 1474
BspFNI CGCG 2 cut(s) 909, 1311
BspLI GGNNCC 3 cut(s) 460, 504, 1384
BspMAI CTGCAG 2 cut(s) 870, 987
BspMI ACCTGC 1 cut(s) 990
BspPI GGATC 5 cut(s) 453, 466, 1377, 1390, 1495
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 4 cut(s) 895, 938, 1091, 1139
BsrI ACTGG 2 cut(s) 240, 430
BssECI CCNNGG 2 cut(s) 304, 483
BssSI CACGAG 2 cut(s) 1030, 1364
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 2 cut(s) 1030, 1364
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 2 cut(s) 74, 530
Bst6I CTCTTC 3 cut(s) 96, 451, 926
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 987
BstDEI CTNAG 5 cut(s) 386, 391, 555, 1343, 1482
BstF5I GGATG 2 cut(s) 228, 542
BstFNI CGCG 2 cut(s) 909, 1311
BstH2I RGCGCY 4 cut(s) 432, 519, 807, 1585
BstHHI GCGC 4 cut(s) 431, 518, 806, 1584
BstMAI GTCTC 1 cut(s) 1027
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 2 cut(s) 193, 1579
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 2 cut(s) 1196, 1246
BstSCI CCNGG 4 cut(s) 239, 483, 594, 1568
BstSFI CTRYAG 3 cut(s) 866, 983, 1531
BstSLI GKGCMC 1 cut(s) 1575
BstUI CGCG 2 cut(s) 909, 1311
BstV1I GCAGC 8 cut(s) 553, 630, 852, 937, 1019, 1450, 1519, 1591
BstV2I GAAGAC 2 cut(s) 432, 628
BstX2I RGATCY 2 cut(s) 458, 1382
BstYI RGATCY 2 cut(s) 458, 1382
BstZI CGGCCG 1 cut(s) 904
BsuI GTATCC 1 cut(s) 1535
BsuRI GGCC 3 cut(s) 111, 239, 906
BtsCI GGATG 2 cut(s) 228, 542
BtsIMutI CAGTG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 990
Cac8I GCNNGC 1 cut(s) 987
CfoI GCGC 4 cut(s) 431, 518, 806, 1584
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 6 cut(s) 338, 776, 1121, 1193, 1243, 1291
DdeI CTNAG 5 cut(s) 386, 391, 555, 1343, 1482
DraI TTTAAA 2 cut(s) 420, 1228
DrdI GACNNNNNNGTC 1 cut(s) 1344
DseDI GACNNNNNNGTC 1 cut(s) 1344
EaeI YGGCCR 2 cut(s) 237, 904
EagI CGGCCG 1 cut(s) 904
Eam1104I CTCTTC 3 cut(s) 96, 451, 926
EarI CTCTTC 3 cut(s) 96, 451, 926
EciI GGCGGA 2 cut(s) 1268, 1544
Ecl136II GAGCTC 2 cut(s) 1267, 1552
EclXI CGGCCG 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 3 cut(s) 1269, 1282, 1554
Eco47III AGCGCT 1 cut(s) 517
Eco52I CGGCCG 1 cut(s) 904
Eco53kI GAGCTC 2 cut(s) 1267, 1552
Eco57I CTGAAG 4 cut(s) 47, 566, 950, 1184
EcoICRI GAGCTC 2 cut(s) 1267, 1552
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 3 cut(s) 1269, 1282, 1554
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 6 cut(s) 341, 779, 1124, 1196, 1246, 1294
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 1 cut(s) 1350
FatI CATG 6 cut(s) 337, 775, 1120, 1192, 1242, 1290
FauI CCCGC 2 cut(s) 1316, 1327
FbaI TGATCA 2 cut(s) 138, 808
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 9 cut(s) 542, 644, 866, 907, 926, 1008, 1439, 1508, 1580
FokI GGATG 2 cut(s) 235, 549
FriOI GRGCYC 3 cut(s) 1269, 1282, 1554
Fsp4HI GCNGC 9 cut(s) 542, 644, 866, 907, 926, 1008, 1439, 1508, 1580
FspBI CTAG 4 cut(s) 402, 1275, 1403, 1586
GlaI GCGC 4 cut(s) 430, 517, 805, 1583
GluI GCNGC 9 cut(s) 542, 644, 866, 907, 926, 1008, 1439, 1508, 1580
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 3 cut(s) 51, 578, 1544
HaeII RGCGCY 4 cut(s) 432, 519, 807, 1585
HaeIII GGCC 3 cut(s) 111, 239, 906
HapII CCGG 5 cut(s) 197, 240, 485, 1504, 1569
HhaI GCGC 4 cut(s) 431, 518, 806, 1584
Hin1II CATG 6 cut(s) 341, 779, 1124, 1196, 1246, 1294
Hin6I GCGC 4 cut(s) 429, 516, 804, 1582
HinP1I GCGC 4 cut(s) 429, 516, 804, 1582
HindIII AAGCTT 1 cut(s) 851
HpaII CCGG 5 cut(s) 197, 240, 485, 1504, 1569
HphI GGTGA 5 cut(s) 164, 610, 931, 1459, 1510
Hpy166II GTNNAC 4 cut(s) 233, 407, 1129, 1566
Hpy188III TCNNGA 7 cut(s) 68, 98, 209, 326, 580, 914, 1325
Hpy8I GTNNAC 4 cut(s) 233, 407, 1129, 1566
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 595, 1159
HpyCH4III ACNGT 2 cut(s) 74, 530
HpyCH4IV ACGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 1579
HpyF3I CTNAG 5 cut(s) 386, 391, 555, 1343, 1482
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 6 cut(s) 341, 779, 1124, 1196, 1246, 1294
HspAI GCGC 4 cut(s) 429, 516, 804, 1582
Ksp22I TGATCA 2 cut(s) 138, 808
LmnI GCTCC 4 cut(s) 597, 862, 1525, 1557
Lsp1109I GCAGC 8 cut(s) 553, 630, 852, 937, 1019, 1450, 1519, 1591
LweI GCATC 3 cut(s) 319, 686, 912
MaeI CTAG 4 cut(s) 402, 1275, 1403, 1586
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 724, 1238
MflI RGATCY 2 cut(s) 458, 1382
MhlI GDGCHC 5 cut(s) 1269, 1282, 1530, 1554, 1575
MlyI GAGTC 5 cut(s) 316, 473, 614, 833, 1029
MmeI TCCRAC 4 cut(s) 30, 378, 645, 1360
MroXI GAANNNNTTC 2 cut(s) 204, 1116
MseI TTAA 4 cut(s) 120, 419, 741, 1227
MslI CAYNNNNRTG 1 cut(s) 1247
MspA1I CMGCKG 3 cut(s) 44, 544, 928
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 5 cut(s) 197, 240, 485, 1504, 1569
MspR9I CCNGG 4 cut(s) 241, 485, 596, 1570
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 2 cut(s) 909, 1311
MwoI GCNNNNNNNGC 2 cut(s) 193, 1579
NciI CCSGG 3 cut(s) 241, 485, 1570
NlaIII CATG 6 cut(s) 341, 779, 1124, 1196, 1246, 1294
NlaIV GGNNCC 3 cut(s) 460, 504, 1384
NmuCI GTSAC 2 cut(s) 724, 1238
NspI RCATGY 2 cut(s) 1196, 1246
PciI ACATGT 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 3 cut(s) 226, 1292, 1383
PdmI GAANNNNTTC 2 cut(s) 204, 1116
PfeI GAWTC 8 cut(s) 38, 155, 284, 434, 470, 697, 827, 1321
PkrI GCNGC 9 cut(s) 543, 645, 867, 908, 927, 1009, 1440, 1509, 1581
PleI GAGTC 5 cut(s) 316, 472, 613, 833, 1029
PpsI GAGTC 5 cut(s) 316, 472, 613, 833, 1029
PscI ACATGT 1 cut(s) 1192
Psp124BI GAGCTC 2 cut(s) 1269, 1554
Psp1406I AACGTT 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 3 cut(s) 460, 504, 1384
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 2 cut(s) 870, 987
PsuI RGATCY 2 cut(s) 458, 1382
PvuII CAGCTG 3 cut(s) 44, 544, 928
RseI CAYNNNNRTG 1 cut(s) 1247
SacI GAGCTC 2 cut(s) 1269, 1554
SaqAI TTAA 4 cut(s) 120, 419, 741, 1227
SatI GCNGC 9 cut(s) 542, 644, 866, 907, 926, 1008, 1439, 1508, 1580
Sau96I GGNCC 1 cut(s) 109
SbfI CCTGCAGG 1 cut(s) 987
SchI GAGTC 5 cut(s) 316, 473, 614, 833, 1029
ScrFI CCNGG 4 cut(s) 241, 485, 596, 1570
SdaI CCTGCAGG 1 cut(s) 987
SduI GDGCHC 5 cut(s) 1269, 1282, 1530, 1554, 1575
SfaNI GCATC 3 cut(s) 319, 686, 912
SfcI CTRYAG 3 cut(s) 866, 983, 1531
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 3 cut(s) 740, 914, 968
SmoI CTYRAG 3 cut(s) 740, 914, 968
Sse8387I CCTGCAGG 1 cut(s) 987
SsiI CCGC 6 cut(s) 346, 907, 1253, 1309, 1334, 1555
SspMI CTAG 4 cut(s) 402, 1275, 1403, 1586
SstI GAGCTC 2 cut(s) 1269, 1554
StyD4I CCNGG 4 cut(s) 239, 483, 594, 1568
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 74, 530
TaiI ACGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 639, 1038
TauI GCSGC 1 cut(s) 909
TfiI GAWTC 8 cut(s) 38, 155, 284, 434, 470, 697, 827, 1321
Tru1I TTAA 4 cut(s) 120, 419, 741, 1227
Tru9I TTAA 4 cut(s) 120, 419, 741, 1227
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 724, 1238
TseI GCWGC 8 cut(s) 541, 643, 865, 925, 1007, 1438, 1507, 1579
Tsp45I GTSAC 2 cut(s) 724, 1238
TspDTI ATGAA 5 cut(s) 146, 189, 438, 792, 1109
TspGWI ACGGA 2 cut(s) 235, 1109
TspRI CASTG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 740
XapI RAATTY 3 cut(s) 212, 766, 792
XceI RCATGY 2 cut(s) 1196, 1246
XmiI GTMKAC 1 cut(s) 1128
XmnI GAANNNNTTC 2 cut(s) 204, 1116
XspI CTAG 4 cut(s) 402, 1275, 1403, 1586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.