No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05180 AT5G05180 AT5G05180 |
| fragaria_vesca | FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 |
| malus_domestica | MD00G1192700.v1.1 MD00G1193000.v1.1 MD00G1193100.v1.1 MD01G1170000.v1.1 MD07G1236000.v1.1 MD07G1236100.v1.1 MD07G1236300.v1.1 MD07G1236600.v1.1 MD07G1236900.v1.1 |
| prunus_persica | Prupe.2G266000_v2.0.a1 Prupe.2G266000_v2.0.a1 |
| pyrus_communis | pycom01g18270 pycom07g21320 |
| rosa_chinensis | RchiOBHm_Chr1g0372621 |
| rosa_laevigata | RLG00000026886 |
| rosa_roxburghii | Rroxscaffold_4G00284820 |
| rosa_rugosa | Rorug01G0373300 |
| rosa_samantha | Rh1AG381800 Rh1BG345200 Rh1CG358600 Rh1DG376400 |
| rosa_wichuraiana | Rw1G033570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1053 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 394, 1198, 1393 |
| AciI | CCGC | 1 cut(s) | 384 |
| AclWI | GGATC | 2 cut(s) | 483, 496 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 5 cut(s) | 152, 842, 849, 1247, 1316 |
| AfaI | GTAC | 1 cut(s) | 950 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 302, 394, 1198, 1393 |
| AflII | CTTAAG | 1 cut(s) | 770 |
| AflIII | ACRYGT | 1 cut(s) | 1255 |
| AhlI | ACTAGT | 1 cut(s) | 1465 |
| AjnI | CCWGG | 3 cut(s) | 561, 1014, 1386 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 905, 937 |
| Alw21I | GWGCWC | 3 cut(s) | 1332, 1459, 1593 |
| Alw44I | GTGCAC | 1 cut(s) | 1455 |
| AlwI | GGATC | 2 cut(s) | 483, 496 |
| ApaLI | GTGCAC | 1 cut(s) | 1455 |
| ApeKI | GCWGC | 5 cut(s) | 571, 622, 673, 1655, 1658 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 835, 867 |
| AspS9I | GGNCC | 1 cut(s) | 109 |
| AsuHPI | GGTGA | 3 cut(s) | 164, 405, 994 |
| AvaII | GGWCC | 1 cut(s) | 109 |
| BaeGI | GKGCMC | 2 cut(s) | 1459, 1638 |
| BamHI | GGATCC | 1 cut(s) | 488 |
| BanII | GRGCYC | 1 cut(s) | 1332 |
| BauI | CACGAG | 1 cut(s) | 1427 |
| Bbv12I | GWGCWC | 3 cut(s) | 1332, 1459, 1593 |
| BbvI | GCAGC | 4 cut(s) | 583, 609, 660, 1645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1557, 1591 |
| BciT130I | CCWGG | 3 cut(s) | 563, 1016, 1388 |
| BciVI | GTATCC | 1 cut(s) | 1598 |
| BclI | TGATCA | 1 cut(s) | 138 |
| BcuI | ACTAGT | 1 cut(s) | 1465 |
| BfaI | CTAG | 3 cut(s) | 432, 590, 1466 |
| BfmI | CTRYAG | 2 cut(s) | 623, 1594 |
| BfrI | CTTAAG | 1 cut(s) | 770 |
| BfuAI | ACCTGC | 1 cut(s) | 1053 |
| BfuI | GTATCC | 1 cut(s) | 1598 |
| BisI | GCNGC | 5 cut(s) | 572, 623, 674, 1656, 1659 |
| BlpI | GCTNAGC | 1 cut(s) | 1545 |
| BlsI | GCNGC | 5 cut(s) | 573, 624, 675, 1657, 1660 |
| Bme1390I | CCNGG | 3 cut(s) | 563, 1016, 1388 |
| Bme18I | GGWCC | 1 cut(s) | 109 |
| BmgT120I | GGNCC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 2 cut(s) | 490, 534 |
| BmrFI | CCNGG | 3 cut(s) | 563, 1016, 1388 |
| BmrI | ACTGGG | 1 cut(s) | 913 |
| BmsI | GCATC | 5 cut(s) | 349, 716, 1000, 1139, 1170 |
| BmuI | ACTGGG | 1 cut(s) | 913 |
| BpmI | CTGGAG | 1 cut(s) | 1607 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1338 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1545 |
| BpuEI | CTTGAG | 3 cut(s) | 671, 998, 1052 |
| Bsa29I | ATCGAT | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 3 cut(s) | 334, 562, 1014 |
| BsaWI | WCCGGW | 2 cut(s) | 219, 323 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 302, 394, 1198, 1393 |
| Bse118I | RCCGGY | 1 cut(s) | 1410 |
| Bse1I | ACTGG | 4 cut(s) | 240, 296, 908, 1590 |
| Bse3DI | GCAATG | 1 cut(s) | 1001 |
| BseBI | CCWGG | 3 cut(s) | 563, 1016, 1388 |
| BseCI | ATCGAT | 1 cut(s) | 229 |
| BseDI | CCNNGG | 3 cut(s) | 334, 562, 1014 |
| BseGI | GGATG | 3 cut(s) | 228, 572, 1185 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 302, 394, 1198, 1393 |
| BseMI | GCAATG | 1 cut(s) | 1001 |
| BseMII | CTCAG | 7 cut(s) | 359, 435, 681, 1233, 1355, 1536, 1548 |
| BseNI | ACTGG | 4 cut(s) | 240, 296, 908, 1590 |
| BseRI | GAGGAG | 2 cut(s) | 333, 1508 |
| BseSI | GKGCMC | 2 cut(s) | 1459, 1638 |
| BseXI | GCAGC | 4 cut(s) | 583, 609, 660, 1645 |
| BseYI | CCCAGC | 1 cut(s) | 239 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshVI | ATCGAT | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1332, 1459, 1593 |
| BsiSI | CCGG | 3 cut(s) | 220, 324, 1411 |
| BslFI | GGGAC | 1 cut(s) | 1413 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 302, 394, 1198, 1393 |
| BsmFI | GGGAC | 1 cut(s) | 1413 |
| BsmI | GAATGC | 1 cut(s) | 1423 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1332, 1459, 1593, 1638 |
| Bsp143I | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1545 |
| Bsp19I | CCATGG | 1 cut(s) | 334 |
| BspACI | CCGC | 1 cut(s) | 384 |
| BspCNI | CTCAG | 7 cut(s) | 360, 434, 682, 1234, 1356, 1537, 1547 |
| BspDI | ATCGAT | 1 cut(s) | 229 |
| BspLI | GGNNCC | 2 cut(s) | 490, 534 |
| BspMAI | CTGCAG | 1 cut(s) | 627 |
| BspMI | ACCTGC | 1 cut(s) | 1053 |
| BspPI | GGATC | 2 cut(s) | 483, 496 |
| BspTI | CTTAAG | 1 cut(s) | 770 |
| BsrDI | GCAATG | 1 cut(s) | 1001 |
| BsrFI | RCCGGY | 1 cut(s) | 1410 |
| BsrI | ACTGG | 4 cut(s) | 240, 296, 908, 1590 |
| BssAI | RCCGGY | 1 cut(s) | 1410 |
| BssECI | CCNNGG | 3 cut(s) | 334, 562, 1014 |
| BssMI | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| BssSI | CACGAG | 1 cut(s) | 1427 |
| BssT1I | CCWWGG | 1 cut(s) | 334 |
| Bst2BI | CACGAG | 1 cut(s) | 1427 |
| Bst2UI | CCWGG | 3 cut(s) | 563, 1016, 1388 |
| Bst4CI | ACNGT | 6 cut(s) | 172, 428, 586, 825, 953, 1351 |
| Bst6I | CTCTTC | 3 cut(s) | 96, 825, 989 |
| BstAFI | CTTAAG | 1 cut(s) | 770 |
| BstC8I | GCNNGC | 2 cut(s) | 1050, 1647 |
| BstDEI | CTNAG | 9 cut(s) | 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545 |
| BstDSI | CCRYGG | 1 cut(s) | 334 |
| BstF5I | GGATG | 3 cut(s) | 228, 572, 1185 |
| BstKTI | GATC | 7 cut(s) | 141, 233, 253, 491, 643, 976, 1533 |
| BstMBI | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 373, 853, 1642, 1655 |
| BstNI | CCWGG | 3 cut(s) | 563, 1016, 1388 |
| BstNSI | RCATGY | 3 cut(s) | 920, 1187, 1259 |
| BstSCI | CCNGG | 3 cut(s) | 561, 1014, 1386 |
| BstSFI | CTRYAG | 2 cut(s) | 623, 1594 |
| BstSLI | GKGCMC | 2 cut(s) | 1459, 1638 |
| BstV1I | GCAGC | 4 cut(s) | 583, 609, 660, 1645 |
| BstX2I | RGATCY | 1 cut(s) | 488 |
| BstYI | RGATCY | 1 cut(s) | 488 |
| Bsu15I | ATCGAT | 1 cut(s) | 229 |
| BsuI | GTATCC | 1 cut(s) | 1598 |
| BsuTUI | ATCGAT | 1 cut(s) | 229 |
| BtgI | CCRYGG | 1 cut(s) | 334 |
| BtgZI | GCGATG | 1 cut(s) | 1162 |
| BtsCI | GGATG | 3 cut(s) | 228, 572, 1185 |
| BtsIMutI | CAGTG | 6 cut(s) | 233, 303, 459, 901, 958, 1583 |
| BveI | ACCTGC | 1 cut(s) | 1053 |
| Cac8I | GCNNGC | 2 cut(s) | 1050, 1647 |
| Cfr10I | RCCGGY | 1 cut(s) | 1410 |
| Cfr13I | GGNCC | 1 cut(s) | 109 |
| ClaI | ATCGAT | 1 cut(s) | 229 |
| Csp6I | GTAC | 1 cut(s) | 949 |
| CviAII | CATG | 8 cut(s) | 42, 335, 806, 883, 917, 1007, 1184, 1256 |
| CviQI | GTAC | 1 cut(s) | 949 |
| DdeI | CTNAG | 9 cut(s) | 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545 |
| DpnI | GATC | 7 cut(s) | 140, 232, 252, 490, 642, 975, 1532 |
| DpnII | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| DraI | TTTAAA | 1 cut(s) | 1291 |
| Eam1104I | CTCTTC | 3 cut(s) | 96, 825, 989 |
| EarI | CTCTTC | 3 cut(s) | 96, 825, 989 |
| EciI | GGCGGA | 1 cut(s) | 373 |
| Ecl136II | GAGCTC | 1 cut(s) | 1330 |
| Eco130I | CCWWGG | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 1332 |
| Eco47I | GGWCC | 1 cut(s) | 109 |
| Eco53kI | GAGCTC | 1 cut(s) | 1330 |
| Eco57I | CTGAAG | 5 cut(s) | 152, 842, 849, 1247, 1316 |
| EcoICRI | GAGCTC | 1 cut(s) | 1330 |
| EcoRII | CCWGG | 3 cut(s) | 561, 1014, 1386 |
| EcoT14I | CCWWGG | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 1185 |
| EcoT38I | GRGCYC | 1 cut(s) | 1332 |
| ErhI | CCWWGG | 1 cut(s) | 334 |
| FaeI | CATG | 8 cut(s) | 45, 338, 809, 886, 920, 1010, 1187, 1259 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 753, 785, 840, 872, 1614, 1646 |
| FaqI | GGGAC | 1 cut(s) | 1413 |
| FatI | CATG | 8 cut(s) | 41, 334, 805, 882, 916, 1006, 1183, 1255 |
| FbaI | TGATCA | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 5 cut(s) | 572, 623, 674, 1656, 1659 |
| FokI | GGATG | 3 cut(s) | 235, 579, 1192 |
| FriOI | GRGCYC | 1 cut(s) | 1332 |
| Fsp4HI | GCNGC | 5 cut(s) | 572, 623, 674, 1656, 1659 |
| FspBI | CTAG | 3 cut(s) | 432, 590, 1466 |
| GluI | GCNGC | 5 cut(s) | 572, 623, 674, 1656, 1659 |
| GsaI | CCCAGC | 1 cut(s) | 243 |
| GsuI | CTGGAG | 1 cut(s) | 1607 |
| HapII | CCGG | 3 cut(s) | 220, 324, 1411 |
| Hin1II | CATG | 8 cut(s) | 45, 338, 809, 886, 920, 1010, 1187, 1259 |
| HpaII | CCGG | 3 cut(s) | 220, 324, 1411 |
| HphI | GGTGA | 3 cut(s) | 164, 405, 994 |
| Hpy166II | GTNNAC | 2 cut(s) | 1345, 1457 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 98, 356, 486, 644, 869, 977, 1031 |
| Hpy8I | GTNNAC | 2 cut(s) | 1345, 1457 |
| Hpy99I | CGWCG | 1 cut(s) | 788 |
| HpyAV | CCTTC | 2 cut(s) | 1100, 1222 |
| HpyCH4III | ACNGT | 6 cut(s) | 172, 428, 586, 825, 953, 1351 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 373, 853, 1642, 1655 |
| HpyF3I | CTNAG | 9 cut(s) | 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545 |
| Hsp92II | CATG | 8 cut(s) | 45, 338, 809, 886, 920, 1010, 1187, 1259 |
| Ksp22I | TGATCA | 1 cut(s) | 138 |
| Kzo9I | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| LmnI | GCTCC | 1 cut(s) | 1588 |
| Lsp1109I | GCAGC | 4 cut(s) | 583, 609, 660, 1645 |
| LweI | GCATC | 5 cut(s) | 349, 716, 1000, 1139, 1170 |
| MaeI | CTAG | 3 cut(s) | 432, 590, 1466 |
| MaeIII | GTNAC | 3 cut(s) | 754, 1351, 1373 |
| MalI | GATC | 7 cut(s) | 140, 232, 252, 490, 642, 975, 1532 |
| MboI | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| MflI | RGATCY | 1 cut(s) | 488 |
| MhlI | GDGCHC | 4 cut(s) | 1332, 1459, 1593, 1638 |
| MluCI | AATT | 7 cut(s) | 212, 523, 989, 1022, 1098, 1475, 1481 |
| MlyI | GAGTC | 3 cut(s) | 346, 503, 709 |
| MmeI | TCCRAC | 2 cut(s) | 675, 867 |
| Mph1103I | ATGCAT | 1 cut(s) | 1185 |
| MseI | TTAA | 4 cut(s) | 120, 507, 771, 1290 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1310 |
| MspA1I | CMGCKG | 1 cut(s) | 1658 |
| MspCI | CTTAAG | 1 cut(s) | 770 |
| MspI | CCGG | 3 cut(s) | 220, 324, 1411 |
| MspR9I | CCNGG | 3 cut(s) | 563, 1016, 1388 |
| MssI | GTTTAAAC | 1 cut(s) | 1291 |
| Mva1269I | GAATGC | 1 cut(s) | 1423 |
| MvaI | CCWGG | 3 cut(s) | 563, 1016, 1388 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 373, 853, 1642, 1655 |
| NcoI | CCATGG | 1 cut(s) | 334 |
| NdeII | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| NlaIII | CATG | 8 cut(s) | 45, 338, 809, 886, 920, 1010, 1187, 1259 |
| NlaIV | GGNNCC | 2 cut(s) | 490, 534 |
| NmuCI | GTSAC | 1 cut(s) | 1373 |
| NsiI | ATGCAT | 1 cut(s) | 1185 |
| NspI | RCATGY | 3 cut(s) | 920, 1187, 1259 |
| PciI | ACATGT | 1 cut(s) | 1255 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1355 |
| PctI | GAATGC | 1 cut(s) | 1423 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 394, 1198, 1393 |
| PfoI | TCCNGGA | 1 cut(s) | 1386 |
| PkrI | GCNGC | 5 cut(s) | 573, 624, 675, 1657, 1660 |
| PleI | GAGTC | 3 cut(s) | 346, 502, 708 |
| PmeI | GTTTAAAC | 1 cut(s) | 1291 |
| PpsI | GAGTC | 3 cut(s) | 346, 502, 708 |
| PscI | ACATGT | 1 cut(s) | 1255 |
| Psp124BI | GAGCTC | 1 cut(s) | 1332 |
| Psp6I | CCWGG | 3 cut(s) | 561, 1014, 1386 |
| PspFI | CCCAGC | 1 cut(s) | 239 |
| PspGI | CCWGG | 3 cut(s) | 561, 1014, 1386 |
| PspN4I | GGNNCC | 2 cut(s) | 490, 534 |
| PspPI | GGNCC | 1 cut(s) | 109 |
| PstI | CTGCAG | 1 cut(s) | 627 |
| PsuI | RGATCY | 1 cut(s) | 488 |
| PvuII | CAGCTG | 1 cut(s) | 1658 |
| RsaI | GTAC | 1 cut(s) | 950 |
| RsaNI | GTAC | 1 cut(s) | 949 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SacI | GAGCTC | 1 cut(s) | 1332 |
| SaqAI | TTAA | 4 cut(s) | 120, 507, 771, 1290 |
| SatI | GCNGC | 5 cut(s) | 572, 623, 674, 1656, 1659 |
| Sau3AI | GATC | 7 cut(s) | 138, 230, 250, 488, 640, 973, 1530 |
| Sau96I | GGNCC | 1 cut(s) | 109 |
| SchI | GAGTC | 3 cut(s) | 346, 503, 709 |
| ScrFI | CCNGG | 3 cut(s) | 563, 1016, 1388 |
| SduI | GDGCHC | 4 cut(s) | 1332, 1459, 1593, 1638 |
| SfaNI | GCATC | 5 cut(s) | 349, 716, 1000, 1139, 1170 |
| SfcI | CTRYAG | 2 cut(s) | 623, 1594 |
| SinI | GGWCC | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SmlI | CTYRAG | 4 cut(s) | 650, 770, 977, 1031 |
| SmoI | CTYRAG | 4 cut(s) | 650, 770, 977, 1031 |
| SpeI | ACTAGT | 1 cut(s) | 1465 |
| Sse9I | AATT | 7 cut(s) | 212, 523, 989, 1022, 1098, 1475, 1481 |
| SsiI | CCGC | 1 cut(s) | 384 |
| SspMI | CTAG | 3 cut(s) | 432, 590, 1466 |
| SstI | GAGCTC | 1 cut(s) | 1332 |
| StyD4I | CCNGG | 3 cut(s) | 561, 1014, 1386 |
| StyI | CCWWGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 6 cut(s) | 172, 428, 586, 825, 953, 1351 |
| TaqI | TCGA | 2 cut(s) | 229, 555 |
| TasI | AATT | 7 cut(s) | 212, 523, 989, 1022, 1098, 1475, 1481 |
| Tru1I | TTAA | 4 cut(s) | 120, 507, 771, 1290 |
| Tru9I | TTAA | 4 cut(s) | 120, 507, 771, 1290 |
| TscAI | CASTG | 6 cut(s) | 240, 303, 466, 908, 958, 1590 |
| TseFI | GTSAC | 1 cut(s) | 1373 |
| TseI | GCWGC | 5 cut(s) | 571, 622, 673, 1655, 1658 |
| Tsp45I | GTSAC | 1 cut(s) | 1373 |
| TspDTI | ATGAA | 7 cut(s) | 30, 539, 822, 1152, 1227, 1464, 1488 |
| TspRI | CASTG | 6 cut(s) | 240, 303, 466, 908, 958, 1590 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 394, 1198, 1393 |
| Vha464I | CTTAAG | 1 cut(s) | 770 |
| VneI | GTGCAC | 1 cut(s) | 1455 |
| VpaK11BI | GGWCC | 1 cut(s) | 109 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 3 cut(s) | 920, 1187, 1259 |
| XspI | CTAG | 3 cut(s) | 432, 590, 1466 |
| Zsp2I | ATGCAT | 1 cut(s) | 1185 |