Prupe.2G266000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
27261963 .. 27264861
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G266000.2

Sequence Viewer

Length: 1665 bp
ATGGTTGATATGGAGAGAACAGAAATGGAGAAGTCAGATTCATGTGGGCAGGACAATACTAATAATCCAGAAAGTTCTATATGGCTGGTAGAAAATCTTGAAGAGATGGACCAGAGCATTAAGCAAATGCTGAAGCTGATCAAAGAAGATGGTGATTCTTTGCCAAAAACTGTTGAACATTATAGTCAGGGGAAGCCAGAGTTGATTGAGGAATTTTACCGGATGTATCGATCACTGGCTGGGTGCTACGATCACTTGACAAAAGAAGCACATAAGATTATGCCATCTGTGATTCCAGTGCAGGGATTCGGAGATTCTGAATCCGGTTTTGACCATGGCTCTCCTCTTATGACTCCTGATGCAAAGCTGAGTTTGCACAAATCCGCCCATCAAGTGGTTGATTTAGATATATCACCAAGCTCAGACGGTTCTAGCCCTGCTCTTTCTCTAAAGAATGGCACTGAATCATCTTCCTCATCATCGTCAGGATCCGAGTCAGAATCTCTTAACTCCCCTGTCAGCAATTACTTGGTTCCATCTCTGAAAGTTCATTTCGACAGCCAGGGATGGCAGCAGAAGATTACTGTGCTAGAAACTGAACTTTCAAGCGTGAAAGAGAAGCTGCAGATGAGGGAGGCTGATCTTGAACTTGAGCAAACACAGGTATTGAAGCTGCAAAAACAGATAGCTGAGTTGGAGAGTCGTGCATCAGACAGAGAAAATGAGATTGCGAGATTGGTTGCAGATTTGGAAGTAACTAAAGAAAGGCTTAAGGGGTCAGACGACGAGATTGTGAAGTTGAAGCATGAACTCACACATAGACTGTCTGAAGAGGCTCATCAAATGCAAGGTCAGCTTCAGGTGGTTCAGGAAGATATAGCCATGTTGGAATCTCAACTTCACTGGGAGAGGAAGCATGTTTTGGAGTTGCAGGAGAAGATTGTGAGGTACAGTGCTGATATATTTGGGCGTGATCTTGAGGTGATGGAATTGAAGAGTGCATTGCATGATGCCCAGGAACAATTTTCTCTTGAGAAAGCAGACCTGCAAGCTGATATTTCAAGTTTGACAGAGAAGCAAACCATTTTGGACACAAGAATTGAAGAAGGGAGTTTGAGAAACAAGAACTTAGAAGATGAAATAAGGCGATGCGAAACTGATAAGATGGAAATGGAAAGGATGCATGTTGCCCAAGAGATGGCTTTGCAAGATGAAATAAGTGGGCTGAAGGTAGAAGTTGCTGAGAGAAATGGACATGTGGAAGCTGTGAATAAAGACTTTGACAGGTTTAAACTGAAGTATGACATAGTAATGGCAGAGAAAGATGAGCTCAATGCTAAGGTTCACACGGTTACAGCGAATCTGAGTTCCCGTGACAATCAAATCCAGGAAATGGAGGGACATCTACGCCGGTTGAATGCAGAACACGAGGATATGATTGCTGGATATGAAAGTGCACATAGACTAGTAGATGAATTGAAATTGAGAGTGGAGGAGTTGCAGAAAGAGGTGGATAGTCAGAGAGTTGCGATCTCAGATGGGGCTGAGCAGAAACGAGAGGCGATACGACAGCTTTGCTTCTCACTGGAGCACTATAGGAGTGGATACAAAGAACTTCGTCAAGCATTTCTTGGGCACAGGAGGCAAGCAGTTGCAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

63.15

Weight (kDa)

4.98

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1053
AccB7I CCANNNNNTGG 3 cut(s) 394, 1198, 1393
AciI CCGC 1 cut(s) 384
AclWI GGATC 2 cut(s) 483, 496
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 5 cut(s) 152, 842, 849, 1247, 1316
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 4 cut(s) 302, 394, 1198, 1393
AflII CTTAAG 1 cut(s) 770
AflIII ACRYGT 1 cut(s) 1255
AhlI ACTAGT 1 cut(s) 1465
AjnI CCWGG 3 cut(s) 561, 1014, 1386
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
Alw21I GWGCWC 3 cut(s) 1332, 1459, 1593
Alw44I GTGCAC 1 cut(s) 1455
AlwI GGATC 2 cut(s) 483, 496
ApaLI GTGCAC 1 cut(s) 1455
ApeKI GCWGC 5 cut(s) 571, 622, 673, 1655, 1658
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 835, 867
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 164, 405, 994
AvaII GGWCC 1 cut(s) 109
BaeGI GKGCMC 2 cut(s) 1459, 1638
BamHI GGATCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 1332
BauI CACGAG 1 cut(s) 1427
Bbv12I GWGCWC 3 cut(s) 1332, 1459, 1593
BbvI GCAGC 4 cut(s) 583, 609, 660, 1645
BcgI CGANNNNNNTGC 2 cut(s) 1557, 1591
BciT130I CCWGG 3 cut(s) 563, 1016, 1388
BciVI GTATCC 1 cut(s) 1598
BclI TGATCA 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 1465
BfaI CTAG 3 cut(s) 432, 590, 1466
BfmI CTRYAG 2 cut(s) 623, 1594
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 1053
BfuI GTATCC 1 cut(s) 1598
BisI GCNGC 5 cut(s) 572, 623, 674, 1656, 1659
BlpI GCTNAGC 1 cut(s) 1545
BlsI GCNGC 5 cut(s) 573, 624, 675, 1657, 1660
Bme1390I CCNGG 3 cut(s) 563, 1016, 1388
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 490, 534
BmrFI CCNGG 3 cut(s) 563, 1016, 1388
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 5 cut(s) 349, 716, 1000, 1139, 1170
BmuI ACTGGG 1 cut(s) 913
BpmI CTGGAG 1 cut(s) 1607
Bpu10I CCTNAGC 1 cut(s) 1338
Bpu1102I GCTNAGC 1 cut(s) 1545
BpuEI CTTGAG 3 cut(s) 671, 998, 1052
Bsa29I ATCGAT 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 334, 562, 1014
BsaWI WCCGGW 2 cut(s) 219, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 394, 1198, 1393
Bse118I RCCGGY 1 cut(s) 1410
Bse1I ACTGG 4 cut(s) 240, 296, 908, 1590
Bse3DI GCAATG 1 cut(s) 1001
BseBI CCWGG 3 cut(s) 563, 1016, 1388
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 334, 562, 1014
BseGI GGATG 3 cut(s) 228, 572, 1185
BseLI CCNNNNNNNGG 4 cut(s) 302, 394, 1198, 1393
BseMI GCAATG 1 cut(s) 1001
BseMII CTCAG 7 cut(s) 359, 435, 681, 1233, 1355, 1536, 1548
BseNI ACTGG 4 cut(s) 240, 296, 908, 1590
BseRI GAGGAG 2 cut(s) 333, 1508
BseSI GKGCMC 2 cut(s) 1459, 1638
BseXI GCAGC 4 cut(s) 583, 609, 660, 1645
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 229
BsiHKAI GWGCWC 3 cut(s) 1332, 1459, 1593
BsiSI CCGG 3 cut(s) 220, 324, 1411
BslFI GGGAC 1 cut(s) 1413
BslI CCNNNNNNNGG 4 cut(s) 302, 394, 1198, 1393
BsmFI GGGAC 1 cut(s) 1413
BsmI GAATGC 1 cut(s) 1423
Bsp1286I GDGCHC 4 cut(s) 1332, 1459, 1593, 1638
Bsp143I GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
Bsp1720I GCTNAGC 1 cut(s) 1545
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 7 cut(s) 360, 434, 682, 1234, 1356, 1537, 1547
BspDI ATCGAT 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 490, 534
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 1053
BspPI GGATC 2 cut(s) 483, 496
BspTI CTTAAG 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 1001
BsrFI RCCGGY 1 cut(s) 1410
BsrI ACTGG 4 cut(s) 240, 296, 908, 1590
BssAI RCCGGY 1 cut(s) 1410
BssECI CCNNGG 3 cut(s) 334, 562, 1014
BssMI GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
BssSI CACGAG 1 cut(s) 1427
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 1427
Bst2UI CCWGG 3 cut(s) 563, 1016, 1388
Bst4CI ACNGT 6 cut(s) 172, 428, 586, 825, 953, 1351
Bst6I CTCTTC 3 cut(s) 96, 825, 989
BstAFI CTTAAG 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 1050, 1647
BstDEI CTNAG 9 cut(s) 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 3 cut(s) 228, 572, 1185
BstKTI GATC 7 cut(s) 141, 233, 253, 491, 643, 976, 1533
BstMBI GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
BstMWI GCNNNNNNNGC 4 cut(s) 373, 853, 1642, 1655
BstNI CCWGG 3 cut(s) 563, 1016, 1388
BstNSI RCATGY 3 cut(s) 920, 1187, 1259
BstSCI CCNGG 3 cut(s) 561, 1014, 1386
BstSFI CTRYAG 2 cut(s) 623, 1594
BstSLI GKGCMC 2 cut(s) 1459, 1638
BstV1I GCAGC 4 cut(s) 583, 609, 660, 1645
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
Bsu15I ATCGAT 1 cut(s) 229
BsuI GTATCC 1 cut(s) 1598
BsuTUI ATCGAT 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 1162
BtsCI GGATG 3 cut(s) 228, 572, 1185
BtsIMutI CAGTG 6 cut(s) 233, 303, 459, 901, 958, 1583
BveI ACCTGC 1 cut(s) 1053
Cac8I GCNNGC 2 cut(s) 1050, 1647
Cfr10I RCCGGY 1 cut(s) 1410
Cfr13I GGNCC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 229
Csp6I GTAC 1 cut(s) 949
CviAII CATG 8 cut(s) 42, 335, 806, 883, 917, 1007, 1184, 1256
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 9 cut(s) 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545
DpnI GATC 7 cut(s) 140, 232, 252, 490, 642, 975, 1532
DpnII GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
DraI TTTAAA 1 cut(s) 1291
Eam1104I CTCTTC 3 cut(s) 96, 825, 989
EarI CTCTTC 3 cut(s) 96, 825, 989
EciI GGCGGA 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 1330
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 1332
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 1330
Eco57I CTGAAG 5 cut(s) 152, 842, 849, 1247, 1316
EcoICRI GAGCTC 1 cut(s) 1330
EcoRII CCWGG 3 cut(s) 561, 1014, 1386
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 1185
EcoT38I GRGCYC 1 cut(s) 1332
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 8 cut(s) 45, 338, 809, 886, 920, 1010, 1187, 1259
FalI AAGNNNNNCTT 6 cut(s) 753, 785, 840, 872, 1614, 1646
FaqI GGGAC 1 cut(s) 1413
FatI CATG 8 cut(s) 41, 334, 805, 882, 916, 1006, 1183, 1255
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 572, 623, 674, 1656, 1659
FokI GGATG 3 cut(s) 235, 579, 1192
FriOI GRGCYC 1 cut(s) 1332
Fsp4HI GCNGC 5 cut(s) 572, 623, 674, 1656, 1659
FspBI CTAG 3 cut(s) 432, 590, 1466
GluI GCNGC 5 cut(s) 572, 623, 674, 1656, 1659
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 1607
HapII CCGG 3 cut(s) 220, 324, 1411
Hin1II CATG 8 cut(s) 45, 338, 809, 886, 920, 1010, 1187, 1259
HpaII CCGG 3 cut(s) 220, 324, 1411
HphI GGTGA 3 cut(s) 164, 405, 994
Hpy166II GTNNAC 2 cut(s) 1345, 1457
Hpy188III TCNNGA 8 cut(s) 68, 98, 356, 486, 644, 869, 977, 1031
Hpy8I GTNNAC 2 cut(s) 1345, 1457
Hpy99I CGWCG 1 cut(s) 788
HpyAV CCTTC 2 cut(s) 1100, 1222
HpyCH4III ACNGT 6 cut(s) 172, 428, 586, 825, 953, 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 853, 1642, 1655
HpyF3I CTNAG 9 cut(s) 368, 421, 690, 1129, 1242, 1338, 1364, 1534, 1545
Hsp92II CATG 8 cut(s) 45, 338, 809, 886, 920, 1010, 1187, 1259
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
LmnI GCTCC 1 cut(s) 1588
Lsp1109I GCAGC 4 cut(s) 583, 609, 660, 1645
LweI GCATC 5 cut(s) 349, 716, 1000, 1139, 1170
MaeI CTAG 3 cut(s) 432, 590, 1466
MaeIII GTNAC 3 cut(s) 754, 1351, 1373
MalI GATC 7 cut(s) 140, 232, 252, 490, 642, 975, 1532
MboI GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 4 cut(s) 1332, 1459, 1593, 1638
MluCI AATT 7 cut(s) 212, 523, 989, 1022, 1098, 1475, 1481
MlyI GAGTC 3 cut(s) 346, 503, 709
MmeI TCCRAC 2 cut(s) 675, 867
Mph1103I ATGCAT 1 cut(s) 1185
MseI TTAA 4 cut(s) 120, 507, 771, 1290
MslI CAYNNNNRTG 1 cut(s) 1310
MspA1I CMGCKG 1 cut(s) 1658
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 3 cut(s) 220, 324, 1411
MspR9I CCNGG 3 cut(s) 563, 1016, 1388
MssI GTTTAAAC 1 cut(s) 1291
Mva1269I GAATGC 1 cut(s) 1423
MvaI CCWGG 3 cut(s) 563, 1016, 1388
MwoI GCNNNNNNNGC 4 cut(s) 373, 853, 1642, 1655
NcoI CCATGG 1 cut(s) 334
NdeII GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
NlaIII CATG 8 cut(s) 45, 338, 809, 886, 920, 1010, 1187, 1259
NlaIV GGNNCC 2 cut(s) 490, 534
NmuCI GTSAC 1 cut(s) 1373
NsiI ATGCAT 1 cut(s) 1185
NspI RCATGY 3 cut(s) 920, 1187, 1259
PciI ACATGT 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 1 cut(s) 1355
PctI GAATGC 1 cut(s) 1423
PflMI CCANNNNNTGG 3 cut(s) 394, 1198, 1393
PfoI TCCNGGA 1 cut(s) 1386
PkrI GCNGC 5 cut(s) 573, 624, 675, 1657, 1660
PleI GAGTC 3 cut(s) 346, 502, 708
PmeI GTTTAAAC 1 cut(s) 1291
PpsI GAGTC 3 cut(s) 346, 502, 708
PscI ACATGT 1 cut(s) 1255
Psp124BI GAGCTC 1 cut(s) 1332
Psp6I CCWGG 3 cut(s) 561, 1014, 1386
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 561, 1014, 1386
PspN4I GGNNCC 2 cut(s) 490, 534
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 1658
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 1 cut(s) 1310
SacI GAGCTC 1 cut(s) 1332
SaqAI TTAA 4 cut(s) 120, 507, 771, 1290
SatI GCNGC 5 cut(s) 572, 623, 674, 1656, 1659
Sau3AI GATC 7 cut(s) 138, 230, 250, 488, 640, 973, 1530
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 3 cut(s) 346, 503, 709
ScrFI CCNGG 3 cut(s) 563, 1016, 1388
SduI GDGCHC 4 cut(s) 1332, 1459, 1593, 1638
SfaNI GCATC 5 cut(s) 349, 716, 1000, 1139, 1170
SfcI CTRYAG 2 cut(s) 623, 1594
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 1310
SmlI CTYRAG 4 cut(s) 650, 770, 977, 1031
SmoI CTYRAG 4 cut(s) 650, 770, 977, 1031
SpeI ACTAGT 1 cut(s) 1465
Sse9I AATT 7 cut(s) 212, 523, 989, 1022, 1098, 1475, 1481
SsiI CCGC 1 cut(s) 384
SspMI CTAG 3 cut(s) 432, 590, 1466
SstI GAGCTC 1 cut(s) 1332
StyD4I CCNGG 3 cut(s) 561, 1014, 1386
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 6 cut(s) 172, 428, 586, 825, 953, 1351
TaqI TCGA 2 cut(s) 229, 555
TasI AATT 7 cut(s) 212, 523, 989, 1022, 1098, 1475, 1481
Tru1I TTAA 4 cut(s) 120, 507, 771, 1290
Tru9I TTAA 4 cut(s) 120, 507, 771, 1290
TscAI CASTG 6 cut(s) 240, 303, 466, 908, 958, 1590
TseFI GTSAC 1 cut(s) 1373
TseI GCWGC 5 cut(s) 571, 622, 673, 1655, 1658
Tsp45I GTSAC 1 cut(s) 1373
TspDTI ATGAA 7 cut(s) 30, 539, 822, 1152, 1227, 1464, 1488
TspRI CASTG 6 cut(s) 240, 303, 466, 908, 958, 1590
Van91I CCANNNNNTGG 3 cut(s) 394, 1198, 1393
Vha464I CTTAAG 1 cut(s) 770
VneI GTGCAC 1 cut(s) 1455
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 212
XceI RCATGY 3 cut(s) 920, 1187, 1259
XspI CTAG 3 cut(s) 432, 590, 1466
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.