MD07G1236600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30939550 .. 30942336
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1236600.v1.1.491

Sequence Viewer

Length: 1521 bp
ATGTGGCTGGTAGAAAATCTTGAAGAGATGGACCAGAGCATTAAGCAAATGATGAAGCTGATCAAAGAAGATGGTGATTCTCTGCCCAACAAAGAGGAAACGTTTTTGCAGAAGAAGCCGGAATTAGTTCAGGAATTTCAACGGATGTATCGTTCACTGGCCGCGTGCTATCAACACTTGAACAAAGCACATAAGGGGTTTGGAGATTCTGAATATGGTTTCAACCAAGGCTCTCCTCTGCTGACTCCCGATGCTAAACATGGTTTGCGGAAATCCGACGATCAAGTTGTTGGTTTTGATATATCACTAAGCTCAGATGGTTCTAGTCCAGCTCTTACTTTAAAGAATGGCGCTGAATCGTCTTCCTCTTCATCATTGGGATCCGAGTCAGATTCTCCTAATTCCCCGGTCAGCAATTACTTGGTTCCACCTCCGAGCGCTGATTTTGACAGTCAGGGATGGCAGCTGAAGATTGCTGAGCTTGAAACTGAACTATCTAGCTTGAAAGAGAAGCTCCAGGTGAAGGAGTCTGATCTTACAATGGAGAAAATGCGTGTCTTCGAGCTGCAGGAACAGATAGTTGAGTTGGAAAATCGTGCATCAGACAGAGATAATGAGATTCGGAAATTGATGGAGGACTTGGAAGTGACTCAAGAAAGGCTTAAGGGGTCGGAAGAAGAGATTGCGAATTTGAAGCATGAACTTGCCGATAGAATTTCCAAAGGCGCTGATCAAATGCAAGGTGTTGAATCTCAACTTGACTCGGAGAGAAAGCATGTTTCGGAGCTGCAGGAGAGGATTGTGAGGTGCAATGCTGACATATTTGGCCGCGAACTTGAGGTAATGCAACTGAAGAGTGCATTGCATGATGCACAGGAACAATTCTCGCTTGAGAAAGCAGACCTGCAGGCTGACATTTCAAGTTTTGCAGCGAAACAAATTGTCTTGGACACGAGACTCGAAGAATTGAGCTTGAGAAACAAGAGGTTAGAGGACGAGATAAGGCAATGTGAAACGGATAAGATGGAAATGGAAAGGCTGCATGCTGTCTACGAGATGGCATTGCAAGATGATATAAGCCGCCTGAAGGTAGAAGTTGCTGATAAAAATGGACATGTGGAAGCTGTAAATGAAGACTTGGACATGTTTAAACTGAAATGTGACATGCTGATGGCGGAGAAAGACGAGCTCAATGGTAGGGCTCAAACGCTCATGGCGAATGTGAGTTCCCGAGACAATCAGATTCAGGAAATGGCGGGACATCTTAGTCGGTTGCAAACAGAACACGAGGGTCTGATCGTTGGATCCGAAAGTGCGTGTAGGCTAGTAGATGAGCTGAAAACAAGGGTGGAGGAGTTGCAGCAGGAGGTGAAAAGGCAGAGTGTTGTGATCTCGGACGGGGCTGAGGAGAAAAGAGAGGTGATCCGGCAGCTTTGTTTCTCGCTGGATCACTACAGGAGCGGATACCAAGAGCTCCGCCAAGCGTTTACCGGGCACAGGCAGCGCCTAGTATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

57.73

Weight (kDa)

4.85

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 2 - 57 5.9e-16 KIP1-like protein
Tropomyosin PF00261 13 - 271 3.9e-09 Tropomyosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1266
Acc36I ACCTGC 1 cut(s) 912
AccBSI CCGCTC 1 cut(s) 1461
AccI GTMKAC 1 cut(s) 1050
AccII CGCG 2 cut(s) 164, 831
AciI CCGC 8 cut(s) 162, 268, 829, 1081, 1175, 1256, 1461, 1477
AclI AACGTT 1 cut(s) 101
AclWI GGATC 6 cut(s) 375, 388, 1299, 1312, 1417, 1455
AcoI YGGCCR 2 cut(s) 159, 826
AcsI RAATTY 3 cut(s) 134, 688, 714
AcuI CTGAAG 3 cut(s) 488, 872, 1106
AfeI AGCGCT 1 cut(s) 439
AfiI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 2 cut(s) 1114, 1143
AgsI TTSAA 9 cut(s) 23, 140, 181, 223, 485, 505, 694, 749, 921
AjnI CCWGG 1 cut(s) 516
AloI GAACNNNNNNTCC 2 cut(s) 136, 168
Alw21I GWGCWC 2 cut(s) 1191, 1476
Alw26I GTCTC 2 cut(s) 949, 1227
AlwI GGATC 6 cut(s) 375, 388, 1299, 1312, 1417, 1455
Ama87I CYCGRG 1 cut(s) 1230
Aor51HI AGCGCT 1 cut(s) 439
AoxI GGCC 2 cut(s) 159, 826
ApeKI GCWGC 8 cut(s) 463, 565, 787, 929, 1039, 1360, 1429, 1501
ApoI RAATTY 3 cut(s) 134, 688, 714
Asp700I GAANNNNTTC 1 cut(s) 126
AspLEI GCGC 4 cut(s) 353, 440, 728, 1506
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 2 cut(s) 407, 1492
AsuHPI GGTGA 4 cut(s) 86, 532, 1381, 1432
AvaI CYCGRG 1 cut(s) 1230
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 1497
BaeI ACNNNNGTAYC 2 cut(s) 131, 164
BamHI GGATCC 2 cut(s) 380, 1304
BanII GRGCYC 3 cut(s) 1191, 1204, 1476
BauI CACGAG 2 cut(s) 952, 1286
BbsI GAAGAC 3 cut(s) 354, 550, 1140
Bbv12I GWGCWC 2 cut(s) 1191, 1476
BbvCI CCTCAGC 1 cut(s) 1404
BbvI GCAGC 8 cut(s) 475, 552, 774, 941, 1026, 1372, 1441, 1513
BccI CCATC 8 cut(s) 22, 65, 311, 453, 625, 1018, 1051, 1165
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 1457
BclI TGATCA 2 cut(s) 60, 730
BcnI CCSGG 2 cut(s) 407, 1492
BcoDI GTCTC 2 cut(s) 949, 1227
BfaI CTAG 4 cut(s) 324, 498, 1325, 1508
BfmI CTRYAG 4 cut(s) 566, 788, 905, 1453
BfoI RGCGCY 4 cut(s) 354, 441, 729, 1507
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 912
BfuI GTATCC 1 cut(s) 1457
BlpI GCTNAGC 1 cut(s) 477
Bme1390I CCNGG 3 cut(s) 407, 518, 1492
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 1230
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 382, 426, 1306
BmrFI CCNGG 3 cut(s) 407, 518, 1492
BmsI GCATC 3 cut(s) 241, 608, 859
BpiI GAAGAC 3 cut(s) 354, 550, 1140
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 1404
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 4 cut(s) 636, 857, 911, 994
BpuMI CCSGG 2 cut(s) 407, 1492
BsaJI CCNNGG 2 cut(s) 226, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 4 cut(s) 817, 860, 1013, 1061
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 226, 405
BseGI GGATG 2 cut(s) 150, 464
BseLI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
BseMI GCAATG 4 cut(s) 817, 860, 1013, 1061
BseMII CTCAG 3 cut(s) 327, 468, 1395
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 3 cut(s) 225, 1367, 1421
BseSI GKGCMC 1 cut(s) 1497
BseXI GCAGC 8 cut(s) 475, 552, 774, 941, 1026, 1372, 1441, 1513
Bsh1236I CGCG 2 cut(s) 164, 831
BshFI GGCC 2 cut(s) 161, 828
BsiHKAI GWGCWC 2 cut(s) 1191, 1476
BsiHKCI CYCGRG 1 cut(s) 1230
BsiSI CCGG 4 cut(s) 119, 407, 1426, 1491
BslFI GGGAC 1 cut(s) 1272
BslI CCNNNNNNNGG 3 cut(s) 523, 1087, 1497
BsmAI GTCTC 2 cut(s) 949, 1227
BsmFI GGGAC 1 cut(s) 1272
BsnI GGCC 2 cut(s) 161, 828
BsoBI CYCGRG 1 cut(s) 1230
Bsp1286I GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 8 cut(s) 162, 268, 829, 1081, 1175, 1256, 1461, 1477
BspANI GGCC 2 cut(s) 161, 828
BspCNI CTCAG 3 cut(s) 326, 469, 1396
BspFNI CGCG 2 cut(s) 164, 831
BspLI GGNNCC 3 cut(s) 382, 426, 1306
BspMAI CTGCAG 3 cut(s) 570, 792, 909
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 6 cut(s) 375, 388, 1299, 1312, 1417, 1455
BspTI CTTAAG 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 1461
BsrDI GCAATG 4 cut(s) 817, 860, 1013, 1061
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 226, 405
BssSI CACGAG 2 cut(s) 952, 1286
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 2 cut(s) 952, 1286
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 4 cut(s) 18, 373, 672, 848
BstAFI CTTAAG 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 166, 909, 1044
BstDEI CTNAG 5 cut(s) 308, 313, 477, 1265, 1404
BstF5I GGATG 2 cut(s) 150, 464
BstFNI CGCG 2 cut(s) 164, 831
BstH2I RGCGCY 4 cut(s) 354, 441, 729, 1507
BstHHI GCGC 4 cut(s) 353, 440, 728, 1506
BstMAI GTCTC 2 cut(s) 949, 1227
BstMWI GCNNNNNNNGC 2 cut(s) 115, 1501
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 5 cut(s) 779, 1046, 1118, 1147, 1168
BstSCI CCNGG 3 cut(s) 405, 516, 1490
BstSFI CTRYAG 4 cut(s) 566, 788, 905, 1453
BstSLI GKGCMC 1 cut(s) 1497
BstUI CGCG 2 cut(s) 164, 831
BstV1I GCAGC 8 cut(s) 475, 552, 774, 941, 1026, 1372, 1441, 1513
BstV2I GAAGAC 3 cut(s) 354, 550, 1140
BstX2I RGATCY 2 cut(s) 380, 1304
BstYI RGATCY 2 cut(s) 380, 1304
BsuI GTATCC 1 cut(s) 1457
BsuRI GGCC 2 cut(s) 161, 828
BtsCI GGATG 2 cut(s) 150, 464
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 3 cut(s) 166, 909, 1044
CfoI GCGC 4 cut(s) 353, 440, 728, 1506
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 9 cut(s) 260, 698, 776, 866, 1043, 1115, 1144, 1165, 1213
DdeI CTNAG 5 cut(s) 308, 313, 477, 1265, 1404
DraI TTTAAA 2 cut(s) 342, 1150
DrdI GACNNNNNNGTC 1 cut(s) 1266
DseDI GACNNNNNNGTC 1 cut(s) 1266
EaeI YGGCCR 2 cut(s) 159, 826
Eam1104I CTCTTC 4 cut(s) 18, 373, 672, 848
EarI CTCTTC 4 cut(s) 18, 373, 672, 848
EciI GGCGGA 2 cut(s) 1190, 1466
Ecl136II GAGCTC 2 cut(s) 1189, 1474
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 3 cut(s) 1191, 1204, 1476
Eco47I GGWCC 1 cut(s) 31
Eco47III AGCGCT 1 cut(s) 439
Eco53kI GAGCTC 2 cut(s) 1189, 1474
Eco57I CTGAAG 3 cut(s) 488, 872, 1106
Eco88I CYCGRG 1 cut(s) 1230
EcoICRI GAGCTC 2 cut(s) 1189, 1474
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 3 cut(s) 1191, 1204, 1476
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 9 cut(s) 263, 701, 779, 869, 1046, 1118, 1147, 1168, 1216
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 1272
FatI CATG 9 cut(s) 259, 697, 775, 865, 1042, 1114, 1143, 1164, 1212
FauI CCCGC 1 cut(s) 1249
FbaI TGATCA 2 cut(s) 60, 730
FblI GTMKAC 1 cut(s) 1050
FokI GGATG 2 cut(s) 157, 471
FriOI GRGCYC 3 cut(s) 1191, 1204, 1476
FspBI CTAG 4 cut(s) 324, 498, 1325, 1508
GlaI GCGC 4 cut(s) 352, 439, 727, 1505
GsuI CTGGAG 1 cut(s) 500
HaeII RGCGCY 4 cut(s) 354, 441, 729, 1507
HaeIII GGCC 2 cut(s) 161, 828
HapII CCGG 4 cut(s) 119, 407, 1426, 1491
HhaI GCGC 4 cut(s) 353, 440, 728, 1506
Hin1II CATG 9 cut(s) 263, 701, 779, 869, 1046, 1118, 1147, 1168, 1216
Hin6I GCGC 4 cut(s) 351, 438, 726, 1504
HinP1I GCGC 4 cut(s) 351, 438, 726, 1504
HpaII CCGG 4 cut(s) 119, 407, 1426, 1491
HphI GGTGA 4 cut(s) 86, 532, 1381, 1432
Hpy166II GTNNAC 3 cut(s) 155, 1051, 1488
Hpy188III TCNNGA 6 cut(s) 20, 131, 248, 653, 1230, 1247
Hpy8I GTNNAC 3 cut(s) 155, 1051, 1488
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 517, 1081
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 1501
HpyF3I CTNAG 5 cut(s) 308, 313, 477, 1265, 1404
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 9 cut(s) 263, 701, 779, 869, 1046, 1118, 1147, 1168, 1216
HspAI GCGC 4 cut(s) 351, 438, 726, 1504
Ksp22I TGATCA 2 cut(s) 60, 730
LmnI GCTCC 4 cut(s) 519, 784, 1458, 1479
Lsp1109I GCAGC 8 cut(s) 475, 552, 774, 941, 1026, 1372, 1441, 1513
LweI GCATC 3 cut(s) 241, 608, 859
MaeI CTAG 4 cut(s) 324, 498, 1325, 1508
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 646, 1160
MbiI CCGCTC 1 cut(s) 1461
MflI RGATCY 2 cut(s) 380, 1304
MhlI GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
MlyI GAGTC 6 cut(s) 238, 395, 536, 643, 755, 951
MmeI TCCRAC 4 cut(s) 300, 567, 651, 1282
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 4 cut(s) 42, 341, 663, 1149
MslI CAYNNNNRTG 1 cut(s) 1169
MspA1I CMGCKG 1 cut(s) 466
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 4 cut(s) 119, 407, 1426, 1491
MspR9I CCNGG 3 cut(s) 407, 518, 1492
MssI GTTTAAAC 1 cut(s) 1150
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 2 cut(s) 164, 831
MwoI GCNNNNNNNGC 2 cut(s) 115, 1501
NciI CCSGG 2 cut(s) 407, 1492
NlaIII CATG 9 cut(s) 263, 701, 779, 869, 1046, 1118, 1147, 1168, 1216
NlaIV GGNNCC 3 cut(s) 382, 426, 1306
NmuCI GTSAC 2 cut(s) 646, 1160
NspI RCATGY 5 cut(s) 779, 1046, 1118, 1147, 1168
PaeI GCATGC 1 cut(s) 1046
PciI ACATGT 2 cut(s) 1114, 1143
PcsI WCGNNNNNNNCGW 3 cut(s) 148, 1214, 1305
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 7 cut(s) 77, 206, 356, 392, 619, 749, 1243
PleI GAGTC 6 cut(s) 238, 394, 535, 643, 755, 951
PmeI GTTTAAAC 1 cut(s) 1150
PpsI GAGTC 6 cut(s) 238, 394, 535, 643, 755, 951
PscI ACATGT 2 cut(s) 1114, 1143
Psp124BI GAGCTC 2 cut(s) 1191, 1476
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 3 cut(s) 382, 426, 1306
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 3 cut(s) 570, 792, 909
PsuI RGATCY 2 cut(s) 380, 1304
PvuII CAGCTG 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 1169
SacI GAGCTC 2 cut(s) 1191, 1476
SaqAI TTAA 4 cut(s) 42, 341, 663, 1149
Sau96I GGNCC 1 cut(s) 31
SbfI CCTGCAGG 1 cut(s) 909
SchI GAGTC 6 cut(s) 238, 395, 536, 643, 755, 951
ScrFI CCNGG 3 cut(s) 407, 518, 1492
SdaI CCTGCAGG 1 cut(s) 909
SduI GDGCHC 4 cut(s) 1191, 1204, 1476, 1497
SfaNI GCATC 3 cut(s) 241, 608, 859
SfcI CTRYAG 4 cut(s) 566, 788, 905, 1453
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 1169
SmlI CTYRAG 5 cut(s) 651, 662, 836, 890, 973
SmoI CTYRAG 5 cut(s) 651, 662, 836, 890, 973
SphI GCATGC 1 cut(s) 1046
Sse8387I CCTGCAGG 1 cut(s) 909
SsiI CCGC 8 cut(s) 162, 268, 829, 1081, 1175, 1256, 1461, 1477
SspMI CTAG 4 cut(s) 324, 498, 1325, 1508
SstI GAGCTC 2 cut(s) 1191, 1476
StyD4I CCNGG 3 cut(s) 405, 516, 1490
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 561, 960
TauI GCSGC 3 cut(s) 164, 831, 1083
TfiI GAWTC 7 cut(s) 77, 206, 356, 392, 619, 749, 1243
Tru1I TTAA 4 cut(s) 42, 341, 663, 1149
Tru9I TTAA 4 cut(s) 42, 341, 663, 1149
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 2 cut(s) 646, 1160
TseI GCWGC 8 cut(s) 463, 565, 787, 929, 1039, 1360, 1429, 1501
Tsp45I GTSAC 2 cut(s) 646, 1160
TspDTI ATGAA 4 cut(s) 68, 360, 714, 1146
TspGWI ACGGA 2 cut(s) 157, 1031
TspRI CASTG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 3 cut(s) 134, 688, 714
XceI RCATGY 5 cut(s) 779, 1046, 1118, 1147, 1168
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 4 cut(s) 324, 498, 1325, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.