RLG00000026886

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004912
Physical Location & Seq
Forward (+)
6772985 .. 6774982
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026886

Sequence Viewer

Length: 1581 bp
ATGGGGACGTCAGATTTGAAGAAGTCAGATTCATGTGAGCAGGACAACAACGTCAGTCAAGATGGTTCTATATGGCTGGTAGAAAGTCTTGAAGAGATGGACCAGAGAATTAAGCAAATGCTTAAGCTGATAAAAGAAGATGGTGATTCTTTGCCTAGAAATGTTGCAGAAGATTCTTATAAGAAGCCAGAGTTAATTGAGGAATTTCAGCAATTGTATCGATCACTGGCTGGGTGCTATGGTCACTTGGCAAAAGAAGCACATATGCAGACTCCTGATGGAAAGGTGGGTTTGCATAAATCTGGCCATCAGGTCATTGGTATAGACATGTCACCAAGCTCAGGTGGTTCTAGTCCTGCTCTTTCTTTAAAGAAAGGCACCGAATCATCTTCCTCATCATCATTGGAGTCTGAGTCAGAATCTCTTAACTTATCTCCCAGCAATTACTCGATTCCACCTCTGAACATGGACTTTGACTCGCAGGGATGGGAGAGGATAATTGAACTAGAGGATGAACTTTCCAGCATGAAAGAGAAGCTCCAGACAAGGGAGGCTGATCTTGAACAGGAGAAATTACGGGTATCAGATCTGCAAAAACAGATAGCTGAGTTGGAGAGTCGTGCATCAGAAACAGATAATGACATTGGTAGATTGGTGAGAGAGTTGGAAGTAATTACAGCAAGGCTCAAGGGGTCGGATGAGGAGAATGCAATGTTGAAGCAGGAGGTTAATGAGAAAGTGTCTGAAGGTGTTAAAGAAATGCAAGGTCATCTTGCAGTGGCTGAGGAAGATATAGCCATGTTGGAAGCTCAACTTGACTCGGAGAGGAAGCATGTTTTGGAGCTGCAGGAGAGGATTGTGAAGTACGATGCCGATTTGGTTGGCCGTGATCTTGAGTTGATGGAATTGAAGAGTGCATTGCATGATGCACAGGAGCTGTTTTCTCTGGAGAAAGCAGACATGCAGTTTCATATTTCTGGTTTGTCAGAGAATCAAACTATCTTGGAGACCAGGCTTGAAGAATGGGAGTGGAAGAACAGGAATCTAGAAGATGAAATAAGGCAACACCAAACTGATAAGATGGAGCTGGAAAAGATGCGTGTTGCACAAGAGATGGTTTTGCAAGGCGAAATAAGTTGGCTGAAGGTAGAACTCGCTGAGCGAGGTAAACATGTGGAAGCTGTGAATAAGGACTTCGACAAATTCAAACTGAAATATGATATGCTAATGGCAGAGAAGGATGAGCTCAATGCTAAGGTTCACACGCTTATGGCGAATGTGAGTTGCCGTGATGATCAAATTAGGGAAATGGAAGGACATCTACGCAGGTTACATACAGACCATGATGATCTGATTGCTGGGTCTGAAAGTGCACGCAAGTTAGTAGATGAACTGAAATTGAGAGTGGAGGAGTTGCAGGAAGAGGTGAATAGGCAGAGAGTTGTGATATCAGACGGGGCTGAGGAGAAAAGAGAGGCTATACGACAGCTATGTTTCTCACTGGAGCATTATAGGAGTGGATATAAAGAACTTCACCAAGCATTTAAGGGGCACAAGTGGCGAGCAGTTGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 KIP1

Protein Analysis

527

Amino Acids

60.18

Weight (kDa)

4.91

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 15 - 80 1.1e-13 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AasI GACNNNNNNGTC 1 cut(s) 50
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 1317
AccB1I GGYRCC 1 cut(s) 377
AcoI YGGCCR 2 cut(s) 304, 883
AcsI RAATTY 2 cut(s) 203, 1202
AcuI CTGAAG 2 cut(s) 765, 1163
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 2 cut(s) 341, 547
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 327, 1171
AgsI TTSAA 8 cut(s) 19, 92, 503, 563, 718, 910, 1019, 1207
AjnI CCWGG 1 cut(s) 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
Alw21I GWGCWC 2 cut(s) 1248, 1375
Alw26I GTCTC 1 cut(s) 1001
Alw44I GTGCAC 1 cut(s) 1371
AlwNI CAGNNNCTG 3 cut(s) 782, 937, 1571
AoxI GGCC 2 cut(s) 304, 883
ApaLI GTGCAC 1 cut(s) 1371
ApeKI GCWGC 3 cut(s) 844, 1571, 1574
ApoI RAATTY 2 cut(s) 203, 1202
ArsI GACNNNNNNTTYG 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 5 cut(s) 155, 324, 667, 1438, 1526
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 2 cut(s) 1375, 1554
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 1248
BarI GAAGNNNNNNTAC 2 cut(s) 1305, 1337
Bbv12I GWGCWC 2 cut(s) 1248, 1375
BbvCI CCTCAGC 2 cut(s) 783, 1461
BbvI GCAGC 3 cut(s) 831, 1558, 1561
BccI CCATC 9 cut(s) 56, 91, 134, 272, 315, 480, 895, 1075, 1108
BceAI ACGGC 2 cut(s) 870, 1272
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 1012
BclI TGATCA 1 cut(s) 1294
BcoDI GTCTC 1 cut(s) 1001
BfaI CTAG 4 cut(s) 156, 351, 506, 1046
BfmI CTRYAG 1 cut(s) 845
BfrI CTTAAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 1317
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 845, 1572, 1575
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 3 cut(s) 846, 1573, 1576
Bme1390I CCNGG 1 cut(s) 1012
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 1012
BmsI GCATC 4 cut(s) 632, 859, 916, 1086
BpmI CTGGAG 3 cut(s) 524, 968, 1523
Bpu10I CCTNAGC 4 cut(s) 340, 783, 1254, 1461
Bpu1102I GCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 2 cut(s) 671, 914
Bsa29I ATCGAT 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 547
Bse1I ACTGG 2 cut(s) 231, 1506
Bse3DI GCAATG 2 cut(s) 717, 917
BseBI CCWGG 1 cut(s) 1012
BseCI ATCGAT 1 cut(s) 220
BseGI GGATG 4 cut(s) 491, 517, 703, 1246
BseLI CCNNNNNNNGG 2 cut(s) 341, 547
BseMI GCAATG 2 cut(s) 717, 917
BseMII CTCAG 6 cut(s) 354, 402, 597, 774, 1149, 1452
BseNI ACTGG 2 cut(s) 231, 1506
BseRI GAGGAG 3 cut(s) 716, 1424, 1478
BseSI GKGCMC 2 cut(s) 1375, 1554
BseXI GCAGC 3 cut(s) 831, 1558, 1561
BseYI CCCAGC 3 cut(s) 230, 437, 1358
BshFI GGCC 2 cut(s) 306, 885
BshNI GGYRCC 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 1248, 1375
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 341, 547
BsmAI GTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 2 cut(s) 306, 885
Bso31I GGTCTC 1 cut(s) 1001
Bsp1286I GDGCHC 3 cut(s) 1248, 1375, 1554
Bsp143I GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
Bsp1720I GCTNAGC 1 cut(s) 1158
BspANI GGCC 2 cut(s) 306, 885
BspCNI CTCAG 6 cut(s) 353, 403, 598, 775, 1150, 1453
BspDI ATCGAT 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 849
BspMI ACCTGC 1 cut(s) 1317
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 2 cut(s) 717, 917
BsrI ACTGG 2 cut(s) 231, 1506
BssMI GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 1012
Bst6I CTCTTC 3 cut(s) 87, 905, 1416
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstC8I GCNNGC 2 cut(s) 1375, 1563
BstDEI CTNAG 7 cut(s) 340, 411, 606, 783, 1158, 1254, 1461
BstF5I GGATG 4 cut(s) 491, 517, 703, 1246
BstKTI GATC 6 cut(s) 224, 559, 589, 892, 1297, 1351
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
BstMWI GCNNNNNNNGC 3 cut(s) 257, 1558, 1571
BstNI CCWGG 1 cut(s) 1012
BstNSI RCATGY 4 cut(s) 331, 836, 964, 1175
BstSCI CCNGG 1 cut(s) 1010
BstSFI CTRYAG 1 cut(s) 845
BstSLI GKGCMC 2 cut(s) 1375, 1554
BstV1I GCAGC 3 cut(s) 831, 1558, 1561
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 220
BsuRI GGCC 2 cut(s) 306, 885
BsuTUI ATCGAT 1 cut(s) 220
BtsCI GGATG 4 cut(s) 491, 517, 703, 1246
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 3 cut(s) 224, 783, 1499
BveI ACCTGC 1 cut(s) 1317
Cac8I GCNNGC 2 cut(s) 1375, 1563
CaiI CAGNNNCTG 3 cut(s) 782, 937, 1571
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 865
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 7 cut(s) 340, 411, 606, 783, 1158, 1254, 1461
DpnI GATC 6 cut(s) 223, 558, 588, 891, 1296, 1350
DpnII GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
DraI TTTAAA 1 cut(s) 369
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 2 cut(s) 304, 883
Eam1104I CTCTTC 3 cut(s) 87, 905, 1416
EarI CTCTTC 3 cut(s) 87, 905, 1416
Ecl136II GAGCTC 1 cut(s) 1246
Eco24I GRGCYC 1 cut(s) 1248
Eco31I GGTCTC 1 cut(s) 1001
Eco32I GATATC 1 cut(s) 1449
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 1246
Eco57I CTGAAG 2 cut(s) 765, 1163
EcoICRI GAGCTC 1 cut(s) 1246
EcoRII CCWGG 1 cut(s) 1010
EcoRV GATATC 1 cut(s) 1449
EcoT38I GRGCYC 1 cut(s) 1248
FalI AAGNNNNNCTT 4 cut(s) 756, 788, 798, 830
FaqI GGGAC 1 cut(s) 19
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 1294
Fnu4HI GCNGC 3 cut(s) 845, 1572, 1575
FokI GGATG 4 cut(s) 498, 524, 710, 1253
FriOI GRGCYC 1 cut(s) 1248
Fsp4HI GCNGC 3 cut(s) 845, 1572, 1575
FspBI CTAG 4 cut(s) 156, 351, 506, 1046
GluI GCNGC 3 cut(s) 845, 1572, 1575
GsaI CCCAGC 3 cut(s) 234, 441, 1362
GsuI CTGGAG 3 cut(s) 524, 968, 1523
HaeIII GGCC 2 cut(s) 306, 885
Hin1I GRCGYC 1 cut(s) 8
HphI GGTGA 5 cut(s) 155, 324, 667, 1438, 1526
Hpy166II GTNNAC 3 cut(s) 1169, 1261, 1373
Hpy188III TCNNGA 8 cut(s) 59, 89, 275, 541, 560, 893, 947, 1046
Hpy8I GTNNAC 3 cut(s) 1169, 1261, 1373
HpyAV CCTTC 4 cut(s) 740, 1138, 1231, 1307
HpyCH4IV ACGT 2 cut(s) 8, 51
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 1558, 1571
HpyF3I CTNAG 7 cut(s) 340, 411, 606, 783, 1158, 1254, 1461
HpySE526I ACGT 2 cut(s) 8, 51
Hsp92I GRCGYC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 1294
Kzo9I GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
LmnI GCTCC 5 cut(s) 543, 841, 934, 1084, 1504
Lsp1109I GCAGC 3 cut(s) 831, 1558, 1561
LweI GCATC 4 cut(s) 632, 859, 916, 1086
MaeI CTAG 4 cut(s) 156, 351, 506, 1046
MaeII ACGT 2 cut(s) 8, 51
MaeIII GTNAC 3 cut(s) 242, 330, 1329
MalI GATC 6 cut(s) 223, 558, 588, 891, 1296, 1350
MboI GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 3 cut(s) 1248, 1375, 1554
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 6 cut(s) 265, 416, 422, 470, 625, 812
MmeI TCCRAC 4 cut(s) 591, 645, 675, 783
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 8 cut(s) 111, 123, 194, 368, 426, 729, 753, 1545
MslI CAYNNNNRTG 1 cut(s) 1268
Msp20I TGGCCA 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 1012
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 1 cut(s) 1012
MwoI GCNNNNNNNGC 3 cut(s) 257, 1558, 1571
NdeI CATATG 1 cut(s) 264
NdeII GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 242, 330
NspI RCATGY 4 cut(s) 331, 836, 964, 1175
PciI ACATGT 2 cut(s) 327, 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 1271
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 8 cut(s) 29, 146, 173, 383, 419, 451, 991, 1042
PkrI GCNGC 3 cut(s) 846, 1573, 1576
PleI GAGTC 6 cut(s) 265, 415, 421, 470, 624, 812
PpsI GAGTC 6 cut(s) 265, 415, 421, 470, 624, 812
PscI ACATGT 2 cut(s) 327, 1171
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 1248
Psp6I CCWGG 1 cut(s) 1010
PspFI CCCAGC 3 cut(s) 230, 437, 1358
PspGI CCWGG 1 cut(s) 1010
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 849
PstNI CAGNNNCTG 3 cut(s) 782, 937, 1571
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
RseI CAYNNNNRTG 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 1248
SaqAI TTAA 8 cut(s) 111, 123, 194, 368, 426, 729, 753, 1545
SatI GCNGC 3 cut(s) 845, 1572, 1575
Sau3AI GATC 6 cut(s) 221, 556, 586, 889, 1294, 1348
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 6 cut(s) 265, 416, 422, 470, 625, 812
ScrFI CCNGG 1 cut(s) 1012
SduI GDGCHC 3 cut(s) 1248, 1375, 1554
SfaNI GCATC 4 cut(s) 632, 859, 916, 1086
SfcI CTRYAG 1 cut(s) 845
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 3 cut(s) 122, 686, 893
SmoI CTYRAG 3 cut(s) 122, 686, 893
SspMI CTAG 4 cut(s) 156, 351, 506, 1046
SstI GAGCTC 1 cut(s) 1248
StyD4I CCNGG 1 cut(s) 1010
TaiI ACGT 2 cut(s) 11, 54
TaqI TCGA 3 cut(s) 220, 449, 1197
TfiI GAWTC 8 cut(s) 29, 146, 173, 383, 419, 451, 991, 1042
Tru1I TTAA 8 cut(s) 111, 123, 194, 368, 426, 729, 753, 1545
Tru9I TTAA 8 cut(s) 111, 123, 194, 368, 426, 729, 753, 1545
TscAI CASTG 3 cut(s) 231, 783, 1506
TseFI GTSAC 2 cut(s) 242, 330
TseI GCWGC 3 cut(s) 844, 1571, 1574
Tsp45I GTSAC 2 cut(s) 242, 330
TspDTI ATGAA 6 cut(s) 21, 528, 542, 959, 1068, 1404
TspRI CASTG 3 cut(s) 231, 783, 1506
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 1371
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 2 cut(s) 203, 1202
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 4 cut(s) 331, 836, 964, 1175
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 4 cut(s) 156, 351, 506, 1046
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.