Rh1AG381800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004912
Physical Location & Seq
Reverse (-)
61335444 .. 61338874
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG381800.1

Sequence Viewer

Length: 1692 bp
ATGGCGGAGGGCATTTTAGTCACACCGACTCTAGCTAGTTGTCCCGACTCTGGTGCCCAGTTTTTGAATTTTGAAAAAAGCGGATTTTGCTTAAAAAGCCGCTTCTTCTATCAGCAAAAGCCCAAAGCTTTCAAATCTCAGGGGCCACTGAACCCAACCACTCTAGTTGTTAGTAAACGTCAAGATGGTTCTGTATGGCTGGTAGAAAATCTTGAAGAGATGGACCAGAGAATTAAGCAAATGCTTAAGCTGATAAAAGAAGATGGTGATTCTTTGCCTAGAAATGTTGCAGAAGATTCTTATAAGAAGCCAGAGTTAATTGAGGAATTTCAGCAATTGTATCGATCACTGGCTGGGTGCTATGGTCACTTGGCAAAAGAAGCACATATGCAGACTCCTGATGGAAAGGTGGGTTTGCATAAATCTGGCCATCAGGTCGTTGGTTTAGATATGTCACCAAGCTCAGGTGGTTCTAGTCCTGCTCTTTCTTTAAAGAAAGGCACCGAATCATCTTCCTCATCATCATTGGAGTCTGAGTCAGAATCTCTTAACTTATCTCCCAGCAATTACTCGATTCCACCTCTGAACATGGACTTTGACTCGCAGGGATGGGAGAGGATAATGGAACTAGAGGATGAACTTTCCAGCATGAAAGAGAAGCTCCAGACAAGGGAGGCTGATCTCGAACAGGAGAAATTACGGGTATCAGATCTGCAAAAACAGATAGCTGAGTTGGACAGTCGTGCATCAGAAACAGATAATGACATTGGTAGATTGGTGAGAGAGTTGGAAGTAATTACAGCAAGGCTCAAGGGGTCGGATGAGGAGAATGCAAGGTTGAAGCAGAAAGTGTCTGAAGGTGTTAAAGAAATGCAAGGTCATCTTGCAGTGGCTGAGGAAGATATAGCCATGTTGGAAGCTCAACTTGACTCGGAGAGGAAGCATGTTTTGGAGCTGCAGGAGAGGATTGTGAAGTACGATGCCGATTTGGTTGGCCGTGATCTTGAGTTGATGGAATTGAAGAGTGCATTGCATGATGCACAGGACCAGTTTTCTCTGGAGAGAGCAGACATGCAGTTTCATATTTCTGGTTTGTCAGAGAATCAAACCATCTTGGAGACCAGGCTTGAAGAATGGGAGTGGAAGAACAGGAATCTAGAAGATGAAATAAGGCAACACCAAACTGATAAGATGGAGCTGGAAAAGATGCGTGTTGCACAAGAGATGGTTTTGCAAGGCGAAATAAGTTGGCTGAAGGTAGAACTCGCTGAACGAGGTAAACATGTGGAAGCTGTGAATAAGGACTTTGACAAATTCAAACTGAAATATGATATGCTAATGGCAGAGAAGGATGAGCTCAATGCTAAGATTCACACGCTTATGGCGAATGTGAGTTGCCGTGATGATCAAATTAGGGAAATGGAAGGACATCTACGCCGGTTACATACAGACCATGAGGATCTGATTGCTGGGTCTGAAAGTGCACGCAAGTTAGTAGATGAACTGAAATTGAGAGTGGAGGAGTTGCAGGAAGAGGTGAATAGGCAGAGAGTTGTGATCTCAGACGGGGCTGAGGAGAAAAGAGAGGCTATACGACAGCTATGTTTCTCACTGGAGCATTATAGGAGTGGATATAAAGAACTTCACCAGGCATTTAAGGGGCACAAGTGGCGAGCAGTTGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 KIP1

Protein Analysis

563

Amino Acids

64.35

Weight (kDa)

5.16

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 61 - 121 5.8e-14 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AccB1I GGYRCC 2 cut(s) 53, 500
AciI CCGC 3 cut(s) 5, 81, 100
AclWI GGATC 1 cut(s) 1467
AcoI YGGCCR 2 cut(s) 427, 994
AcsI RAATTY 3 cut(s) 67, 326, 1313
AcuI CTGAAG 2 cut(s) 876, 1274
AfaI GTAC 1 cut(s) 977
AfiI CCNNNNNNNGG 3 cut(s) 50, 464, 670
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 8 cut(s) 67, 74, 133, 215, 841, 1021, 1130, 1318
AjnI CCWGG 2 cut(s) 1121, 1647
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
Alw21I GWGCWC 2 cut(s) 1359, 1486
Alw26I GTCTC 1 cut(s) 1112
Alw44I GTGCAC 1 cut(s) 1482
AlwI GGATC 1 cut(s) 1467
AlwNI CAGNNNCTG 2 cut(s) 893, 1682
AoxI GGCC 3 cut(s) 143, 427, 994
ApaLI GTGCAC 1 cut(s) 1482
ApeKI GCWGC 3 cut(s) 955, 1682, 1685
ApoI RAATTY 3 cut(s) 67, 326, 1313
AspS9I GGNCC 3 cut(s) 143, 223, 1045
AsuHPI GGTGA 5 cut(s) 278, 447, 790, 1549, 1637
AvaII GGWCC 2 cut(s) 223, 1045
BaeGI GKGCMC 3 cut(s) 58, 1486, 1665
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 2 cut(s) 53, 500
BanII GRGCYC 1 cut(s) 1359
BarI GAAGNNNNNNTAC 2 cut(s) 1416, 1448
Bbv12I GWGCWC 2 cut(s) 1359, 1486
BbvCI CCTCAGC 2 cut(s) 894, 1572
BbvI GCAGC 3 cut(s) 942, 1669, 1672
BceAI ACGGC 2 cut(s) 981, 1383
BcgI CGANNNNNNTGC 4 cut(s) 35, 69, 323, 357
BciT130I CCWGG 2 cut(s) 1123, 1649
BclI TGATCA 1 cut(s) 1405
BcoDI GTCTC 1 cut(s) 1112
BfaI CTAG 7 cut(s) 32, 36, 164, 279, 474, 629, 1157
BfmI CTRYAG 1 cut(s) 956
BfrI CTTAAG 1 cut(s) 245
BglII AGATCT 1 cut(s) 709
BisI GCNGC 4 cut(s) 100, 956, 1683, 1686
BlsI GCNGC 4 cut(s) 101, 957, 1684, 1687
Bme1390I CCNGG 2 cut(s) 1123, 1649
Bme18I GGWCC 2 cut(s) 223, 1045
BmgT120I GGNCC 3 cut(s) 143, 223, 1045
BmiI GGNNCC 3 cut(s) 55, 144, 502
BmrFI CCNGG 2 cut(s) 1123, 1649
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 4 cut(s) 755, 970, 1027, 1197
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 3 cut(s) 647, 1079, 1634
Bpu10I CCTNAGC 3 cut(s) 463, 894, 1572
BpuEI CTTGAG 2 cut(s) 794, 1025
Bsa29I ATCGAT 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 1112
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 464, 670
Bse118I RCCGGY 1 cut(s) 1437
Bse1I ACTGG 4 cut(s) 58, 354, 1048, 1617
Bse3DI GCAATG 1 cut(s) 1028
BseBI CCWGG 2 cut(s) 1123, 1649
BseCI ATCGAT 1 cut(s) 343
BseGI GGATG 4 cut(s) 614, 640, 826, 1357
BseLI CCNNNNNNNGG 3 cut(s) 50, 464, 670
BseMI GCAATG 1 cut(s) 1028
BseMII CTCAG 7 cut(s) 152, 477, 525, 720, 885, 1563, 1575
BseNI ACTGG 4 cut(s) 58, 354, 1048, 1617
BseRI GAGGAG 3 cut(s) 839, 1535, 1589
BseSI GKGCMC 3 cut(s) 58, 1486, 1665
BseXI GCAGC 3 cut(s) 942, 1669, 1672
BseYI CCCAGC 3 cut(s) 353, 560, 1469
BshFI GGCC 3 cut(s) 145, 429, 996
BshNI GGYRCC 2 cut(s) 53, 500
BshVI ATCGAT 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 1359, 1486
BsiSI CCGG 1 cut(s) 1438
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 50, 464, 670
BsmAI GTCTC 1 cut(s) 1112
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 3 cut(s) 145, 429, 996
Bso31I GGTCTC 1 cut(s) 1112
Bsp1286I GDGCHC 4 cut(s) 58, 1359, 1486, 1665
Bsp143I GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
BspACI CCGC 3 cut(s) 5, 81, 100
BspANI GGCC 3 cut(s) 145, 429, 996
BspCNI CTCAG 7 cut(s) 151, 476, 526, 721, 886, 1564, 1574
BspDI ATCGAT 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 55, 144, 502
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 1 cut(s) 1467
BspT107I GGYRCC 2 cut(s) 53, 500
BspTI CTTAAG 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 1112
BsrDI GCAATG 1 cut(s) 1028
BsrFI RCCGGY 1 cut(s) 1437
BsrI ACTGG 4 cut(s) 58, 354, 1048, 1617
BssAI RCCGGY 1 cut(s) 1437
BssMI GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
Bst2UI CCWGG 2 cut(s) 1123, 1649
Bst4CI ACNGT 1 cut(s) 740
Bst6I CTCTTC 3 cut(s) 210, 1016, 1527
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 1682
BstC8I GCNNGC 2 cut(s) 1486, 1674
BstDEI CTNAG 8 cut(s) 138, 463, 534, 729, 894, 1365, 1561, 1572
BstF5I GGATG 4 cut(s) 614, 640, 826, 1357
BstKTI GATC 7 cut(s) 347, 682, 712, 1003, 1408, 1462, 1560
BstMAI GTCTC 1 cut(s) 1112
BstMBI GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
BstMWI GCNNNNNNNGC 5 cut(s) 87, 96, 380, 1669, 1682
BstNI CCWGG 2 cut(s) 1123, 1649
BstNSI RCATGY 3 cut(s) 947, 1075, 1286
BstSCI CCNGG 2 cut(s) 1121, 1647
BstSFI CTRYAG 1 cut(s) 956
BstSLI GKGCMC 3 cut(s) 58, 1486, 1665
BstV1I GCAGC 3 cut(s) 942, 1669, 1672
BstX2I RGATCY 2 cut(s) 709, 1459
BstYI RGATCY 2 cut(s) 709, 1459
Bsu15I ATCGAT 1 cut(s) 343
BsuRI GGCC 3 cut(s) 145, 429, 996
BsuTUI ATCGAT 1 cut(s) 343
BtsCI GGATG 4 cut(s) 614, 640, 826, 1357
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 4 cut(s) 146, 347, 894, 1610
Cac8I GCNNGC 2 cut(s) 1486, 1674
CaiI CAGNNNCTG 2 cut(s) 893, 1682
Cfr10I RCCGGY 1 cut(s) 1437
Cfr13I GGNCC 3 cut(s) 143, 223, 1045
ClaI ATCGAT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 976
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 8 cut(s) 589, 649, 910, 944, 1034, 1072, 1283, 1454
CviQI GTAC 1 cut(s) 976
DdeI CTNAG 8 cut(s) 138, 463, 534, 729, 894, 1365, 1561, 1572
DpnI GATC 7 cut(s) 346, 681, 711, 1002, 1407, 1461, 1559
DpnII GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 427, 994
Eam1104I CTCTTC 3 cut(s) 210, 1016, 1527
EarI CTCTTC 3 cut(s) 210, 1016, 1527
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 1357
Eco24I GRGCYC 1 cut(s) 1359
Eco31I GGTCTC 1 cut(s) 1112
Eco47I GGWCC 2 cut(s) 223, 1045
Eco53kI GAGCTC 1 cut(s) 1357
Eco57I CTGAAG 2 cut(s) 876, 1274
EcoICRI GAGCTC 1 cut(s) 1357
EcoRII CCWGG 2 cut(s) 1121, 1647
EcoT38I GRGCYC 1 cut(s) 1359
FaeI CATG 8 cut(s) 592, 652, 913, 947, 1037, 1075, 1286, 1457
FalI AAGNNNNNCTT 4 cut(s) 867, 899, 909, 941
FaqI GGGAC 1 cut(s) 27
FatI CATG 8 cut(s) 588, 648, 909, 943, 1033, 1071, 1282, 1453
FauNDI CATATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 4 cut(s) 100, 956, 1683, 1686
FokI GGATG 4 cut(s) 621, 647, 833, 1364
FriOI GRGCYC 1 cut(s) 1359
Fsp4HI GCNGC 4 cut(s) 100, 956, 1683, 1686
FspBI CTAG 7 cut(s) 32, 36, 164, 279, 474, 629, 1157
GluI GCNGC 4 cut(s) 100, 956, 1683, 1686
GsaI CCCAGC 3 cut(s) 357, 564, 1473
GsuI CTGGAG 3 cut(s) 647, 1079, 1634
HaeIII GGCC 3 cut(s) 145, 429, 996
HapII CCGG 1 cut(s) 1438
Hin1II CATG 8 cut(s) 592, 652, 913, 947, 1037, 1075, 1286, 1457
HindIII AAGCTT 1 cut(s) 126
HpaII CCGG 1 cut(s) 1438
HphI GGTGA 5 cut(s) 278, 447, 790, 1549, 1637
Hpy166II GTNNAC 3 cut(s) 176, 1280, 1484
Hpy188III TCNNGA 9 cut(s) 44, 182, 212, 398, 664, 683, 1004, 1058, 1157
Hpy8I GTNNAC 3 cut(s) 176, 1280, 1484
HpyAV CCTTC 4 cut(s) 851, 1249, 1342, 1418
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4IV ACGT 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 96, 380, 1669, 1682
HpyF3I CTNAG 8 cut(s) 138, 463, 534, 729, 894, 1365, 1561, 1572
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 8 cut(s) 592, 652, 913, 947, 1037, 1075, 1286, 1457
Ksp22I TGATCA 1 cut(s) 1405
Kzo9I GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
LmnI GCTCC 4 cut(s) 666, 952, 1195, 1615
Lsp1109I GCAGC 3 cut(s) 942, 1669, 1672
LweI GCATC 4 cut(s) 755, 970, 1027, 1197
MaeI CTAG 7 cut(s) 32, 36, 164, 279, 474, 629, 1157
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 4 cut(s) 19, 365, 453, 1440
MalI GATC 7 cut(s) 346, 681, 711, 1002, 1407, 1461, 1559
MboI GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 2 cut(s) 709, 1459
MhlI GDGCHC 4 cut(s) 58, 1359, 1486, 1665
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 7 cut(s) 22, 41, 388, 539, 545, 593, 923
MmeI TCCRAC 4 cut(s) 714, 768, 798, 894
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 8 cut(s) 92, 234, 246, 317, 491, 549, 864, 1656
MslI CAYNNNNRTG 1 cut(s) 1379
Msp20I TGGCCA 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 1438
MspR9I CCNGG 2 cut(s) 1123, 1649
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 2 cut(s) 1123, 1649
MwoI GCNNNNNNNGC 5 cut(s) 87, 96, 380, 1669, 1682
NdeI CATATG 1 cut(s) 387
NdeII GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
NlaIII CATG 8 cut(s) 592, 652, 913, 947, 1037, 1075, 1286, 1457
NlaIV GGNNCC 3 cut(s) 55, 144, 502
NmuCI GTSAC 3 cut(s) 19, 365, 453
NspI RCATGY 3 cut(s) 947, 1075, 1286
PciI ACATGT 1 cut(s) 1282
PcsI WCGNNNNNNNCGW 1 cut(s) 1382
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 8 cut(s) 269, 296, 506, 542, 574, 1102, 1153, 1369
PkrI GCNGC 4 cut(s) 101, 957, 1684, 1687
PleI GAGTC 7 cut(s) 22, 41, 388, 538, 544, 593, 923
PpsI GAGTC 7 cut(s) 22, 41, 388, 538, 544, 593, 923
PscI ACATGT 1 cut(s) 1282
PsiI TTATAA 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 1359
Psp6I CCWGG 2 cut(s) 1121, 1647
PspFI CCCAGC 3 cut(s) 353, 560, 1469
PspGI CCWGG 2 cut(s) 1121, 1647
PspN4I GGNNCC 3 cut(s) 55, 144, 502
PspPI GGNCC 3 cut(s) 143, 223, 1045
PstI CTGCAG 1 cut(s) 960
PstNI CAGNNNCTG 2 cut(s) 893, 1682
PsuI RGATCY 2 cut(s) 709, 1459
RsaI GTAC 1 cut(s) 977
RsaNI GTAC 1 cut(s) 976
RseI CAYNNNNRTG 1 cut(s) 1379
SacI GAGCTC 1 cut(s) 1359
SaqAI TTAA 8 cut(s) 92, 234, 246, 317, 491, 549, 864, 1656
SatI GCNGC 4 cut(s) 100, 956, 1683, 1686
Sau3AI GATC 7 cut(s) 344, 679, 709, 1000, 1405, 1459, 1557
Sau96I GGNCC 3 cut(s) 143, 223, 1045
SchI GAGTC 7 cut(s) 22, 41, 388, 539, 545, 593, 923
ScrFI CCNGG 2 cut(s) 1123, 1649
SduI GDGCHC 4 cut(s) 58, 1359, 1486, 1665
SfaNI GCATC 4 cut(s) 755, 970, 1027, 1197
SfcI CTRYAG 1 cut(s) 956
SinI GGWCC 2 cut(s) 223, 1045
SmiMI CAYNNNNRTG 1 cut(s) 1379
SmlI CTYRAG 3 cut(s) 245, 809, 1004
SmoI CTYRAG 3 cut(s) 245, 809, 1004
SsiI CCGC 3 cut(s) 5, 81, 100
SspMI CTAG 7 cut(s) 32, 36, 164, 279, 474, 629, 1157
SstI GAGCTC 1 cut(s) 1359
StyD4I CCNGG 2 cut(s) 1121, 1647
TaaI ACNGT 1 cut(s) 740
TaiI ACGT 1 cut(s) 181
TaqI TCGA 3 cut(s) 343, 572, 684
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 8 cut(s) 269, 296, 506, 542, 574, 1102, 1153, 1369
Tru1I TTAA 8 cut(s) 92, 234, 246, 317, 491, 549, 864, 1656
Tru9I TTAA 8 cut(s) 92, 234, 246, 317, 491, 549, 864, 1656
TscAI CASTG 4 cut(s) 153, 354, 894, 1617
TseFI GTSAC 3 cut(s) 19, 365, 453
TseI GCWGC 3 cut(s) 955, 1682, 1685
Tsp45I GTSAC 3 cut(s) 19, 365, 453
TspDTI ATGAA 5 cut(s) 651, 665, 1070, 1179, 1515
TspRI CASTG 4 cut(s) 153, 354, 894, 1617
Vha464I CTTAAG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 1482
VpaK11BI GGWCC 2 cut(s) 223, 1045
XapI RAATTY 3 cut(s) 67, 326, 1313
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 3 cut(s) 947, 1075, 1286
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 7 cut(s) 32, 36, 164, 279, 474, 629, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.