Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004912

Physical Location & Seq

Genomic Coordinates Forward (+)

46703033 .. 46703530

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1193100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAATTGGAAAGGCTGCATGCTGTTTACGAGATGGCATTGCAAGATGAAATAAGCCGCCTGAATGTTGAAGTTGCTGATAGAAATGGACATGTGGAAGCTGTAAATAAAGACTTGGACAGCTTTAAACTGAAATATGACATGCTGATGGCGGAGAAAGATGAGCTCAATGGTAGGGCTCAAACGCTCATGGCGAATGTGAGTTCCCGCGACAATCAGATTCAGGAAATGGCGGGTCATCTTAGTCGGTTACAAACAGAACACGAGGGTCTGATTGTTGGATCCGAAAGTGCGCGTAGGCTAGTAGATGAGCTGAAAACAAGAGTGGAGGAGTTGCAGCAAGAGGTGAAAAGGCAGAGTGTTGTGATCTCGGATGGGGCTGAGGAGAAAAGAGAGGTGATCCGGCAGCTTTGTTTCTCGCTGGAGCACTACAGGAGCGGATACCAAGAGCTCCGCCAAGCGTTTACCGGGCACAGGCAGCGCCTAGTATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 KIP1

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

5.43

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05180 AT5G05180 AT5G05180
fragaria_vesca	FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161
malus_domestica	MD00G1192700.v1.1 MD00G1193000.v1.1 MD00G1193100.v1.1 MD01G1170000.v1.1 MD07G1236000.v1.1 MD07G1236100.v1.1 MD07G1236300.v1.1 MD07G1236600.v1.1 MD07G1236900.v1.1
prunus_persica	Prupe.2G266000_v2.0.a1 Prupe.2G266000_v2.0.a1
pyrus_communis	pycom01g18270 pycom07g21320
rosa_chinensis	RchiOBHm_Chr1g0372621
rosa_laevigata	RLG00000026886
rosa_roxburghii	Rroxscaffold_4G00284820
rosa_rugosa	Rorug01G0373300
rosa_samantha	Rh1AG381800 Rh1BG345200 Rh1CG358600 Rh1DG376400
rosa_wichuraiana	Rw1G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	2 cut(s)	210, 295
AciI	CCGC	6 cut(s)	58, 152, 208, 233, 438, 454
AclWI	GGATC	3 cut(s)	276, 289, 394
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	6 cut(s)	101, 123, 166, 313, 409, 451
AluI	AGCT	6 cut(s)	101, 123, 166, 313, 409, 451
Alw21I	GWGCWC	3 cut(s)	168, 429, 453
AlwI	GGATC	3 cut(s)	276, 289, 394
ApeKI	GCWGC	4 cut(s)	16, 337, 406, 478
AspLEI	GCGC	2 cut(s)	295, 483
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	358, 409
BaeGI	GKGCMC	1 cut(s)	474
BamHI	GGATCC	1 cut(s)	281
BanII	GRGCYC	3 cut(s)	168, 181, 453
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	3 cut(s)	168, 429, 453
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	3, 349, 418, 490
BccI	CCATC	3 cut(s)	28, 142, 368
BciVI	GTATCC	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	469
BfaI	CTAG	2 cut(s)	302, 485
BfmI	CTRYAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	5 cut(s)	17, 58, 338, 407, 479
BlsI	GCNGC	5 cut(s)	18, 59, 339, 408, 480
Bme1390I	CCNGG	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	344, 398
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	3, 349, 418, 490
Bsh1236I	CGCG	2 cut(s)	210, 295
BsiHKAI	GWGCWC	3 cut(s)	168, 429, 453
BsiSI	CCGG	2 cut(s)	403, 468
BslI	CCNNNNNNNGG	1 cut(s)	474
Bsp1286I	GDGCHC	5 cut(s)	168, 181, 429, 453, 474
Bsp143I	GATC	3 cut(s)	281, 366, 399
BspACI	CCGC	6 cut(s)	58, 152, 208, 233, 438, 454
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	2 cut(s)	210, 295
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	3 cut(s)	276, 289, 394
BsrBI	CCGCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	38
BssMI	GATC	3 cut(s)	281, 366, 399
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	242, 381
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	2 cut(s)	210, 295
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	2 cut(s)	295, 483
BstKTI	GATC	3 cut(s)	284, 369, 402
BstMBI	GATC	3 cut(s)	281, 366, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNSI	RCATGY	3 cut(s)	23, 95, 145
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	2 cut(s)	210, 295
BstV1I	GCAGC	4 cut(s)	3, 349, 418, 490
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	2 cut(s)	295, 483
CviAII	CATG	4 cut(s)	20, 92, 142, 190
DdeI	CTNAG	2 cut(s)	242, 381
DpnI	GATC	3 cut(s)	283, 368, 401
DpnII	GATC	3 cut(s)	281, 366, 399
DraI	TTTAAA	1 cut(s)	127
EciI	GGCGGA	2 cut(s)	167, 443
Ecl136II	GAGCTC	2 cut(s)	166, 451
Eco24I	GRGCYC	3 cut(s)	168, 181, 453
Eco53kI	GAGCTC	2 cut(s)	166, 451
EcoICRI	GAGCTC	2 cut(s)	166, 451
EcoT38I	GRGCYC	3 cut(s)	168, 181, 453
FaeI	CATG	4 cut(s)	23, 95, 145, 193
FaiI	YATR	6 cut(s)	21, 93, 138, 143, 191, 490
FatI	CATG	4 cut(s)	19, 91, 141, 189
FauI	CCCGC	2 cut(s)	215, 226
Fnu4HI	GCNGC	5 cut(s)	17, 58, 338, 407, 479
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	3 cut(s)	168, 181, 453
Fsp4HI	GCNGC	5 cut(s)	17, 58, 338, 407, 479
FspBI	CTAG	2 cut(s)	302, 485
GlaI	GCGC	2 cut(s)	294, 482
GluI	GCNGC	5 cut(s)	17, 58, 338, 407, 479
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	484
HapII	CCGG	2 cut(s)	403, 468
HhaI	GCGC	2 cut(s)	295, 483
Hin1II	CATG	4 cut(s)	23, 95, 145, 193
Hin6I	GCGC	2 cut(s)	293, 481
HinP1I	GCGC	2 cut(s)	293, 481
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	403, 468
HphI	GGTGA	2 cut(s)	358, 409
Hpy166II	GTNNAC	2 cut(s)	28, 465
Hpy188I	TCNGA	5 cut(s)	219, 273, 286, 373, 497
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	28, 465
HpyCH4V	TGCA	3 cut(s)	19, 43, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	2 cut(s)	242, 381
Hsp92II	CATG	4 cut(s)	23, 95, 145, 193
HspAI	GCGC	2 cut(s)	293, 481
Kzo9I	GATC	3 cut(s)	281, 366, 399
LmnI	GCTCC	3 cut(s)	424, 435, 456
LpnPI	CCDG	7 cut(s)	74, 209, 407, 416, 418, 460, 481
Lsp1109I	GCAGC	4 cut(s)	3, 349, 418, 490
MaeI	CTAG	2 cut(s)	302, 485
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	283, 368, 401
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	3 cut(s)	281, 366, 399
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	5 cut(s)	168, 181, 429, 453, 474
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	5 cut(s)	259, 322, 337, 376, 388
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	2 cut(s)	403, 468
MspR9I	CCNGG	1 cut(s)	469
MvnI	CGCG	2 cut(s)	210, 295
MwoI	GCNNNNNNNGC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	281, 366, 399
NlaIII	CATG	4 cut(s)	23, 95, 145, 193
NlaIV	GGNNCC	1 cut(s)	283
NspI	RCATGY	3 cut(s)	23, 95, 145
PaeI	GCATGC	1 cut(s)	23
PciI	ACATGT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	5 cut(s)	18, 59, 339, 408, 480
PscI	ACATGT	1 cut(s)	91
Psp124BI	GAGCTC	2 cut(s)	168, 453
PspN4I	GGNNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	2 cut(s)	168, 453
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	17, 58, 338, 407, 479
Sau3AI	GATC	3 cut(s)	281, 366, 399
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	5 cut(s)	168, 181, 429, 453, 474
SetI	ASST	8 cut(s)	103, 125, 168, 315, 348, 399, 411, 453
SfcI	CTRYAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	6 cut(s)	58, 152, 208, 233, 438, 454
SspMI	CTAG	2 cut(s)	302, 485
SstI	GAGCTC	2 cut(s)	168, 453
StyD4I	CCNGG	1 cut(s)	467
TasI	AATT	1 cut(s)	5
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	4 cut(s)	16, 337, 406, 478
TspDTI	ATGAA	1 cut(s)	63
XceI	RCATGY	3 cut(s)	23, 95, 145
XspI	CTAG	2 cut(s)	302, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.