Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004912

Physical Location & Seq

Genomic Coordinates Reverse (-)

61242132 .. 61245519

Gene Structure 3388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGGGACATCAGATTTGAAGAAGTCGGATTCATGTGAGCAGGACAACAATGTCAGTCAAGATGGTTCTGTATGGCTGGTAGAAAATCTTGAAGAGATGGACCAGAGAATTAAGCAAATGCTTAAGCTGATAAAAGAAGATGGTGATTCTTTGCCTAGAAATGTTGCAGAAGATTCTTATAAGAAGCCAGAGTTAATTGAGGAATTTCAGCGATTGTATCGATCACTGGCTGGGTGCTATGGTCACTTGGCAAAAGAAGCACATATGCAGACTCCTGATGGAAAGGGATGGGAGAGGATAATGGAACTAGAGGAAGAACTTTCCAGCATGAAAGAGAAGCTCCAGACAAGGGAGGCTGATCTCGAACAGGAGAAATTACGGGTATCAGATCTGCAAAAACAGATAGCTGAGTTGGAGAGTCGTGCATCAGAAACAGATAATGACATTGGTAGATTGGTGAGAGAGTTGGAAGTAATTACAGCAAGGCTCAAGGGGTCGGATGAGGAGAATGCAAGGTTGAAGCAGGAGGTTACTGAGAAAGTGTCTGAAGGTGTTAAAGAAATGCAAGGTCATCTTGCAGTGGCTGAGGAAGATATAGCCATGTTGGAAGCTCAACTTGACTCAGAGAGGAAGCATGTTTTGGAGCTGCAGGAGAGGATTGTGAAGTACGATGCCGATTTGGTTGGCCGTGATCTTGAGTTGATGGAATTGAAGAGTGCATTGCATGATGCACAGGACCAGTTTTCTGTGGAGAGAGCAGACATGCAGTTTCATATTTCTGGTTTGTCAGAGAATCAAACCATCTTGGAGACCAGGCTTGAAGAATGGGAGTGGAAGAACAGGAATCTAGAAATTGAAATAAGGCAACACCAAACTGATAAGATGGAGCTGGAAAAGATGCGTGTTGCACAAGAGATGGTTTTGCAAGGCGAAATAAGTTGGCTGAAGGTAGAACTCGCTGAACGAGGTAAACATGTGGAAGCTGTGAATAAGGACTTTGACAAATTCAAACTGAAATATGATATGCTAATGGCAGAAAAGGATGAGCTCAATGCTAAGGTTCACACGCTTATGGCGAATGTGAGTTGCCGTGATGATCAAATTAGGGAAATGGAAGGACATCTACGCCGGTTACATACAGACCATGAGGATCTGATTGCTGGGTCTGAAAGTGCACGCAAGTTAGTAGATGAACTGAAATTGAGAGTGGAGGAGTTGCAGGAAGAGGTGAATAGGCAGAGAGTTGTGATCTCAGACGGGGCTGAGGAGAAAAGAGAGGCTATACGACAGCTATGTTTCTCACTGGAGCATTATAGGAGTGGATATAAAGAACTTCACCAAGCATTTAAGGGGCACAAGTGGCGAGCAGTTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 KIP1

Protein Analysis

460

Amino Acids

53.53

Weight (kDa)

5.0

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	15 - 80	6.6e-15	KIP1-like protein
CCDC39	PF24161	98 - 299	1.4e-06	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05180 AT5G05180 AT5G05180
fragaria_vesca	FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161
malus_domestica	MD00G1192700.v1.1 MD00G1193000.v1.1 MD00G1193100.v1.1 MD01G1170000.v1.1 MD07G1236000.v1.1 MD07G1236100.v1.1 MD07G1236300.v1.1 MD07G1236600.v1.1 MD07G1236900.v1.1
prunus_persica	Prupe.2G266000_v2.0.a1 Prupe.2G266000_v2.0.a1
pyrus_communis	pycom01g18270 pycom07g21320
rosa_chinensis	RchiOBHm_Chr1g0372621
rosa_laevigata	RLG00000026886
rosa_roxburghii	Rroxscaffold_4G00284820
rosa_rugosa	Rorug01G0373300
rosa_samantha	Rh1AG381800 Rh1BG345200 Rh1CG358600 Rh1DG376400
rosa_wichuraiana	Rw1G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AasI	GACNNNNNNGTC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	1158
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	2 cut(s)	203, 1004
AcuI	CTGAAG	2 cut(s)	567, 965
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	973
AgsI	TTSAA	7 cut(s)	19, 92, 520, 712, 821, 857, 1009
AjnI	CCWGG	1 cut(s)	812
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	9 cut(s)	127, 340, 407, 611, 646, 889, 983, 1048, 1291
AluI	AGCT	9 cut(s)	127, 340, 407, 611, 646, 889, 983, 1048, 1291
Alw21I	GWGCWC	2 cut(s)	1050, 1177
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	1 cut(s)	1173
AlwI	GGATC	1 cut(s)	1158
AlwNI	CAGNNNCTG	2 cut(s)	584, 1373
AoxI	GGCC	1 cut(s)	685
ApaLI	GTGCAC	1 cut(s)	1173
ApeKI	GCWGC	3 cut(s)	646, 1373, 1376
ApoI	RAATTY	2 cut(s)	203, 1004
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	100, 736
AsuHPI	GGTGA	4 cut(s)	155, 469, 1240, 1328
AvaII	GGWCC	2 cut(s)	100, 736
BaeGI	GKGCMC	2 cut(s)	1177, 1356
BanII	GRGCYC	1 cut(s)	1050
BarI	GAAGNNNNNNTAC	2 cut(s)	1107, 1139
Bbv12I	GWGCWC	2 cut(s)	1050, 1177
BbvCI	CCTCAGC	2 cut(s)	585, 1263
BbvI	GCAGC	3 cut(s)	633, 1360, 1363
BccI	CCATC	9 cut(s)	56, 91, 134, 272, 282, 697, 809, 877, 910
BceAI	ACGGC	2 cut(s)	672, 1074
BciT130I	CCWGG	1 cut(s)	814
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	3 cut(s)	156, 308, 848
BfmI	CTRYAG	1 cut(s)	647
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	647, 1374, 1377
BlsI	GCNGC	3 cut(s)	648, 1375, 1378
Bme1390I	CCNGG	1 cut(s)	814
Bme18I	GGWCC	2 cut(s)	100, 736
BmgT120I	GGNCC	2 cut(s)	100, 736
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	4 cut(s)	434, 661, 718, 888
BpmI	CTGGAG	2 cut(s)	326, 1325
Bpu10I	CCTNAGC	3 cut(s)	585, 1056, 1263
BpuEI	CTTGAG	2 cut(s)	473, 716
Bsa29I	ATCGAT	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	803
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	3 cut(s)	231, 739, 1308
Bse3DI	GCAATG	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	814
BseCI	ATCGAT	1 cut(s)	220
BseGI	GGATG	3 cut(s)	293, 505, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	6 cut(s)	399, 525, 576, 636, 1254, 1266
BseNI	ACTGG	3 cut(s)	231, 739, 1308
BseRI	GAGGAG	3 cut(s)	518, 1226, 1280
BseSI	GKGCMC	2 cut(s)	1177, 1356
BseXI	GCAGC	3 cut(s)	633, 1360, 1363
BseYI	CCCAGC	2 cut(s)	230, 1160
BshFI	GGCC	1 cut(s)	687
BshVI	ATCGAT	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	1050, 1177
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	687
Bso31I	GGTCTC	1 cut(s)	803
Bsp1286I	GDGCHC	3 cut(s)	1050, 1177, 1356
Bsp143I	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
BspANI	GGCC	1 cut(s)	687
BspCNI	CTCAG	6 cut(s)	400, 526, 577, 635, 1255, 1265
BspDI	ATCGAT	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	651
BspPI	GGATC	1 cut(s)	1158
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	719
BsrFI	RCCGGY	1 cut(s)	1128
BsrI	ACTGG	3 cut(s)	231, 739, 1308
BssAI	RCCGGY	1 cut(s)	1128
BssMI	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
Bst2UI	CCWGG	1 cut(s)	814
Bst6I	CTCTTC	3 cut(s)	87, 707, 1218
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	1373
BstC8I	GCNNGC	2 cut(s)	1177, 1365
BstDEI	CTNAG	7 cut(s)	408, 534, 585, 622, 1056, 1252, 1263
BstF5I	GGATG	3 cut(s)	293, 505, 1048
BstKTI	GATC	7 cut(s)	224, 361, 391, 694, 1099, 1153, 1251
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 1360, 1373
BstNI	CCWGG	1 cut(s)	814
BstNSI	RCATGY	3 cut(s)	638, 766, 977
BstSCI	CCNGG	1 cut(s)	812
BstSFI	CTRYAG	1 cut(s)	647
BstSLI	GKGCMC	2 cut(s)	1177, 1356
BstV1I	GCAGC	3 cut(s)	633, 1360, 1363
BstX2I	RGATCY	2 cut(s)	388, 1150
BstYI	RGATCY	2 cut(s)	388, 1150
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	687
BsuTUI	ATCGAT	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	293, 505, 1048
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	3 cut(s)	224, 585, 1301
Cac8I	GCNNGC	2 cut(s)	1177, 1365
CaiI	CAGNNNCTG	2 cut(s)	584, 1373
Cfr10I	RCCGGY	1 cut(s)	1128
Cfr13I	GGNCC	2 cut(s)	100, 736
ClaI	ATCGAT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	8 cut(s)	33, 328, 601, 635, 725, 763, 974, 1145
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	7 cut(s)	408, 534, 585, 622, 1056, 1252, 1263
DpnI	GATC	7 cut(s)	223, 360, 390, 693, 1098, 1152, 1250
DpnII	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	87, 707, 1218
EarI	CTCTTC	3 cut(s)	87, 707, 1218
Ecl136II	GAGCTC	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	1050
Eco31I	GGTCTC	1 cut(s)	803
Eco47I	GGWCC	2 cut(s)	100, 736
Eco53kI	GAGCTC	1 cut(s)	1048
Eco57I	CTGAAG	2 cut(s)	567, 965
EcoICRI	GAGCTC	1 cut(s)	1048
EcoRII	CCWGG	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	1050
FaeI	CATG	8 cut(s)	36, 331, 604, 638, 728, 766, 977, 1148
FalI	AAGNNNNNCTT	4 cut(s)	558, 590, 600, 632
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	8 cut(s)	32, 327, 600, 634, 724, 762, 973, 1144
FauNDI	CATATG	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	3 cut(s)	647, 1374, 1377
FokI	GGATG	3 cut(s)	300, 512, 1055
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	3 cut(s)	647, 1374, 1377
FspBI	CTAG	3 cut(s)	156, 308, 848
GluI	GCNGC	3 cut(s)	647, 1374, 1377
GsaI	CCCAGC	2 cut(s)	234, 1164
GsuI	CTGGAG	2 cut(s)	326, 1325
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	1 cut(s)	1129
Hin1II	CATG	8 cut(s)	36, 331, 604, 638, 728, 766, 977, 1148
HinfI	GANTC	8 cut(s)	29, 146, 173, 271, 418, 620, 793, 844
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	4 cut(s)	155, 469, 1240, 1328
Hpy166II	GTNNAC	3 cut(s)	971, 1063, 1175
Hpy188III	TCNNGA	7 cut(s)	59, 89, 275, 343, 362, 695, 848
Hpy8I	GTNNAC	3 cut(s)	971, 1063, 1175
HpyAV	CCTTC	3 cut(s)	542, 940, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 1360, 1373
HpyF3I	CTNAG	7 cut(s)	408, 534, 585, 622, 1056, 1252, 1263
Hsp92II	CATG	8 cut(s)	36, 331, 604, 638, 728, 766, 977, 1148
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
LmnI	GCTCC	4 cut(s)	345, 643, 886, 1306
Lsp1109I	GCAGC	3 cut(s)	633, 1360, 1363
LweI	GCATC	4 cut(s)	434, 661, 718, 888
MaeI	CTAG	3 cut(s)	156, 308, 848
MaeIII	GTNAC	3 cut(s)	242, 529, 1131
MalI	GATC	7 cut(s)	223, 360, 390, 693, 1098, 1152, 1250
MboI	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
MflI	RGATCY	2 cut(s)	388, 1150
MhlI	GDGCHC	3 cut(s)	1050, 1177, 1356
MlyI	GAGTC	3 cut(s)	265, 427, 614
MmeI	TCCRAC	5 cut(s)	6, 393, 447, 477, 585
MseI	TTAA	5 cut(s)	111, 123, 194, 555, 1347
MslI	CAYNNNNRTG	1 cut(s)	1070
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	814
MwoI	GCNNNNNNNGC	3 cut(s)	257, 1360, 1373
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
NlaIII	CATG	8 cut(s)	36, 331, 604, 638, 728, 766, 977, 1148
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	3 cut(s)	638, 766, 977
PciI	ACATGT	1 cut(s)	973
PcsI	WCGNNNNNNNCGW	1 cut(s)	1073
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	5 cut(s)	29, 146, 173, 793, 844
PkrI	GCNGC	3 cut(s)	648, 1375, 1378
PleI	GAGTC	3 cut(s)	265, 426, 614
PpsI	GAGTC	3 cut(s)	265, 426, 614
PscI	ACATGT	1 cut(s)	973
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	812
PspFI	CCCAGC	2 cut(s)	230, 1160
PspGI	CCWGG	1 cut(s)	812
PspPI	GGNCC	2 cut(s)	100, 736
PstI	CTGCAG	1 cut(s)	651
PstNI	CAGNNNCTG	2 cut(s)	584, 1373
PsuI	RGATCY	2 cut(s)	388, 1150
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	1070
SacI	GAGCTC	1 cut(s)	1050
SaqAI	TTAA	5 cut(s)	111, 123, 194, 555, 1347
SatI	GCNGC	3 cut(s)	647, 1374, 1377
Sau3AI	GATC	7 cut(s)	221, 358, 388, 691, 1096, 1150, 1248
Sau96I	GGNCC	2 cut(s)	100, 736
SchI	GAGTC	3 cut(s)	265, 427, 614
ScrFI	CCNGG	1 cut(s)	814
SduI	GDGCHC	3 cut(s)	1050, 1177, 1356
SfaNI	GCATC	4 cut(s)	434, 661, 718, 888
SfcI	CTRYAG	1 cut(s)	647
SinI	GGWCC	2 cut(s)	100, 736
SmiMI	CAYNNNNRTG	1 cut(s)	1070
SmlI	CTYRAG	3 cut(s)	122, 488, 695
SmoI	CTYRAG	3 cut(s)	122, 488, 695
SspMI	CTAG	3 cut(s)	156, 308, 848
SstI	GAGCTC	1 cut(s)	1050
StyD4I	CCNGG	1 cut(s)	812
TaqI	TCGA	2 cut(s)	220, 363
TfiI	GAWTC	5 cut(s)	29, 146, 173, 793, 844
Tru1I	TTAA	5 cut(s)	111, 123, 194, 555, 1347
Tru9I	TTAA	5 cut(s)	111, 123, 194, 555, 1347
TscAI	CASTG	3 cut(s)	231, 585, 1308
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	646, 1373, 1376
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	21, 344, 761, 1206
TspRI	CASTG	3 cut(s)	231, 585, 1308
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	1173
VpaK11BI	GGWCC	2 cut(s)	100, 736
XapI	RAATTY	2 cut(s)	203, 1004
XbaI	TCTAGA	1 cut(s)	847
XceI	RCATGY	3 cut(s)	638, 766, 977
XspI	CTAG	3 cut(s)	156, 308, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.