Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004912

Physical Location & Seq

Genomic Coordinates Forward (+)

46689490 .. 46690470

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAAATGCGTGTCTTCGAGCTGCAAGAACAGATAGTTGAGTTGGAAAATCGTGCATCAGACAGAGATAATGAGATTCGGAAATTGATGGAGGACTTGGAAGTGACTAAAGAAAGGCTTAAGGGGTCGGACGAAGAGATTGCGAATTTGAAGCATGAACTGGACGATAGAATTTCCAAAGGCGCTGATCAAATGCAAGGTGTTGAATCTCAACTTGACTCGGAGAGAAAGCATGTTTCGGAGCTGCCGGAGAGGATTGTGAGGTGCAATGCTGACATATTCGGCTGCGAACTTGAGGTAATGCAACTGAAGAGCGCATTGCATGATGCACAGGAACAATTCTCGCTTGAGAAAGCCGACCTGCAAGCTGACATTTCAAGTTTTGCAGCGAAACGAATTGTCTTGGACACGAGACTCGAAGAATTGAGTTTGAGAAACAAGAGGTTAGAGGACGAGATAAGGCAATGTGAAACGGATAAGATGGAAATGGAAAGGCTGCATGCTGTCTACGAGATGGCATTGCAAGATGATATAAGCCGCCTGAAGGTAGAAGTTGCTGATAAAAATGGACATGTGGAAGCTGTAAATGAAGACTTGGACATGTTTAAACTGAAATATGACATGCTGATGGCGGAGAAAAACGAGCTCAATGGTAGGGCTCAAACGCTCATGGCGAATGTGAGTTCCCGCGACAATCAGATTCAGGAAATGGCGGGACATCTTAGTCGGTTGCAAACAGAACGCGAGGGTCTGATCGTTGGATCCGAAAGTGCGCGTAGGCTAGTAGATGAGCTGAAAACAAGAGTGGGGGAGTTGCAGCAAGAGGTGAAAAGGCAGAGTGTTGTGATCTCGGATGGGGCTGAGGAGAAAAGAGAGGTGATCCGGCAGCTTTGTTTCTCGCTGGAGCACTACAGGAGCGGATACCAAGAGCTCCGCCAAGCGTTTACCGGGCACAGGCAGCGCCTAGTATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 KIP1

Protein Analysis

327

Amino Acids

37.88

Weight (kDa)

5.02

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05180 AT5G05180 AT5G05180
fragaria_vesca	FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161 FvH4_7g26161
malus_domestica	MD00G1192700.v1.1 MD00G1193000.v1.1 MD00G1193100.v1.1 MD01G1170000.v1.1 MD07G1236000.v1.1 MD07G1236100.v1.1 MD07G1236300.v1.1 MD07G1236600.v1.1 MD07G1236900.v1.1
prunus_persica	Prupe.2G266000_v2.0.a1 Prupe.2G266000_v2.0.a1
pyrus_communis	pycom01g18270 pycom07g21320
rosa_chinensis	RchiOBHm_Chr1g0372621
rosa_laevigata	RLG00000026886
rosa_roxburghii	Rroxscaffold_4G00284820
rosa_rugosa	Rorug01G0373300
rosa_samantha	Rh1AG381800 Rh1BG345200 Rh1CG358600 Rh1DG376400
rosa_wichuraiana	Rw1G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	726
Acc36I	ACCTGC	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	921
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	3 cut(s)	693, 747, 778
AciI	CCGC	6 cut(s)	541, 635, 691, 716, 921, 937
AclWI	GGATC	3 cut(s)	759, 772, 877
AcsI	RAATTY	2 cut(s)	148, 174
AcuI	CTGAAG	2 cut(s)	332, 566
AfiI	CCNNNNNNNGG	2 cut(s)	547, 957
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	2 cut(s)	574, 603
AgsI	TTSAA	3 cut(s)	154, 209, 381
AluBI	AGCT	8 cut(s)	25, 247, 371, 584, 649, 796, 892, 934
AluI	AGCT	8 cut(s)	25, 247, 371, 584, 649, 796, 892, 934
Alw21I	GWGCWC	3 cut(s)	651, 912, 936
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	3 cut(s)	759, 772, 877
ApeKI	GCWGC	8 cut(s)	25, 247, 288, 389, 499, 820, 889, 961
ApoI	RAATTY	2 cut(s)	148, 174
AspLEI	GCGC	4 cut(s)	188, 320, 778, 966
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	2 cut(s)	841, 892
BaeGI	GKGCMC	1 cut(s)	957
BamHI	GGATCC	1 cut(s)	764
BanII	GRGCYC	3 cut(s)	651, 664, 936
BauI	CACGAG	1 cut(s)	412
BbsI	GAAGAC	2 cut(s)	10, 600
Bbv12I	GWGCWC	3 cut(s)	651, 912, 936
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	8 cut(s)	12, 234, 275, 401, 486, 832, 901, 973
BccI	CCATC	5 cut(s)	85, 478, 511, 625, 851
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	917
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	952
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	785, 968
BfmI	CTRYAG	1 cut(s)	913
BfoI	RGCGCY	2 cut(s)	189, 967
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	917
BisI	GCNGC	9 cut(s)	26, 248, 289, 390, 500, 541, 821, 890, 962
BlsI	GCNGC	9 cut(s)	27, 249, 290, 391, 501, 542, 822, 891, 963
Bme1390I	CCNGG	1 cut(s)	952
BmiI	GGNNCC	1 cut(s)	766
BmrFI	CCNGG	1 cut(s)	952
BmsI	GCATC	2 cut(s)	68, 319
BpiI	GAAGAC	2 cut(s)	10, 600
BpmI	CTGGAG	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	2 cut(s)	317, 371
BpuMI	CCSGG	1 cut(s)	952
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 957
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	4 cut(s)	277, 320, 473, 521
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	547, 957
BseMI	GCAATG	4 cut(s)	277, 320, 473, 521
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	881
BseSI	GKGCMC	1 cut(s)	957
BseXI	GCAGC	8 cut(s)	12, 234, 275, 401, 486, 832, 901, 973
Bsh1236I	CGCG	3 cut(s)	693, 747, 778
BsiHKAI	GWGCWC	3 cut(s)	651, 912, 936
BsiSI	CCGG	3 cut(s)	251, 886, 951
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	547, 957
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	732
Bsp1286I	GDGCHC	5 cut(s)	651, 664, 912, 936, 957
Bsp143I	GATC	5 cut(s)	190, 756, 764, 849, 882
BspACI	CCGC	6 cut(s)	541, 635, 691, 716, 921, 937
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	3 cut(s)	693, 747, 778
BspLI	GGNNCC	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	3 cut(s)	759, 772, 877
BspQI	GCTCTTC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	921
BsrDI	GCAATG	4 cut(s)	277, 320, 473, 521
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	190, 756, 764, 849, 882
BssSI	CACGAG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	132, 308
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	369, 504
BstDEI	CTNAG	2 cut(s)	725, 864
BstF5I	GGATG	1 cut(s)	862
BstFNI	CGCG	3 cut(s)	693, 747, 778
BstH2I	RGCGCY	2 cut(s)	189, 967
BstHHI	GCGC	4 cut(s)	188, 320, 778, 966
BstKTI	GATC	5 cut(s)	193, 759, 767, 852, 885
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	5 cut(s)	190, 756, 764, 849, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	961
BstNSI	RCATGY	5 cut(s)	239, 506, 578, 607, 628
BstSCI	CCNGG	1 cut(s)	950
BstSFI	CTRYAG	1 cut(s)	913
BstSLI	GKGCMC	1 cut(s)	957
BstUI	CGCG	3 cut(s)	693, 747, 778
BstV1I	GCAGC	8 cut(s)	12, 234, 275, 401, 486, 832, 901, 973
BstV2I	GAAGAC	2 cut(s)	10, 600
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BsuI	GTATCC	1 cut(s)	917
BtsCI	GGATG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	369, 504
CfoI	GCGC	4 cut(s)	188, 320, 778, 966
CviAII	CATG	8 cut(s)	158, 236, 326, 503, 575, 604, 625, 673
DdeI	CTNAG	2 cut(s)	725, 864
DpnI	GATC	5 cut(s)	192, 758, 766, 851, 884
DpnII	GATC	5 cut(s)	190, 756, 764, 849, 882
DraI	TTTAAA	1 cut(s)	610
DrdI	GACNNNNNNGTC	1 cut(s)	726
DseDI	GACNNNNNNGTC	1 cut(s)	726
Eam1104I	CTCTTC	2 cut(s)	132, 308
EarI	CTCTTC	2 cut(s)	132, 308
EciI	GGCGGA	2 cut(s)	650, 926
Ecl136II	GAGCTC	2 cut(s)	649, 934
Eco24I	GRGCYC	3 cut(s)	651, 664, 936
Eco53kI	GAGCTC	2 cut(s)	649, 934
Eco57I	CTGAAG	2 cut(s)	332, 566
EcoICRI	GAGCTC	2 cut(s)	649, 934
EcoT38I	GRGCYC	3 cut(s)	651, 664, 936
FaeI	CATG	8 cut(s)	161, 239, 329, 506, 578, 607, 628, 676
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	8 cut(s)	157, 235, 325, 502, 574, 603, 624, 672
FauI	CCCGC	2 cut(s)	698, 709
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	9 cut(s)	26, 248, 289, 390, 500, 541, 821, 890, 962
FokI	GGATG	1 cut(s)	869
FriOI	GRGCYC	3 cut(s)	651, 664, 936
Fsp4HI	GCNGC	9 cut(s)	26, 248, 289, 390, 500, 541, 821, 890, 962
FspBI	CTAG	2 cut(s)	785, 968
GlaI	GCGC	4 cut(s)	187, 319, 777, 965
GluI	GCNGC	9 cut(s)	26, 248, 289, 390, 500, 541, 821, 890, 962
GsuI	CTGGAG	1 cut(s)	926
HaeII	RGCGCY	2 cut(s)	189, 967
HapII	CCGG	3 cut(s)	251, 886, 951
HhaI	GCGC	4 cut(s)	188, 320, 778, 966
Hin1II	CATG	8 cut(s)	161, 239, 329, 506, 578, 607, 628, 676
Hin6I	GCGC	4 cut(s)	186, 318, 776, 964
HinP1I	GCGC	4 cut(s)	186, 318, 776, 964
HinfI	GANTC	5 cut(s)	79, 209, 221, 417, 703
HpaII	CCGG	3 cut(s)	251, 886, 951
HphI	GGTGA	2 cut(s)	841, 892
Hpy166II	GTNNAC	2 cut(s)	511, 948
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	2 cut(s)	511, 948
HpyAV	CCTTC	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	961
HpyF3I	CTNAG	2 cut(s)	725, 864
Hsp92II	CATG	8 cut(s)	161, 239, 329, 506, 578, 607, 628, 676
HspAI	GCGC	4 cut(s)	186, 318, 776, 964
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	190, 756, 764, 849, 882
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	4 cut(s)	244, 907, 918, 939
Lsp1109I	GCAGC	8 cut(s)	12, 234, 275, 401, 486, 832, 901, 973
LweI	GCATC	2 cut(s)	68, 319
MaeI	CTAG	2 cut(s)	785, 968
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	192, 758, 766, 851, 884
MbiI	CCGCTC	1 cut(s)	921
MboI	GATC	5 cut(s)	190, 756, 764, 849, 882
MboII	GAAGA	5 cut(s)	10, 149, 325, 434, 605
MflI	RGATCY	1 cut(s)	764
MhlI	GDGCHC	5 cut(s)	651, 664, 912, 936, 957
MluCI	AATT	6 cut(s)	86, 148, 174, 341, 399, 425
MlyI	GAGTC	2 cut(s)	215, 411
MmeI	TCCRAC	3 cut(s)	27, 111, 742
MseI	TTAA	2 cut(s)	123, 609
MslI	CAYNNNNRTG	1 cut(s)	629
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	3 cut(s)	251, 886, 951
MspR9I	CCNGG	1 cut(s)	952
MssI	GTTTAAAC	1 cut(s)	610
MvnI	CGCG	3 cut(s)	693, 747, 778
MwoI	GCNNNNNNNGC	1 cut(s)	961
NciI	CCSGG	1 cut(s)	952
NdeII	GATC	5 cut(s)	190, 756, 764, 849, 882
NlaIII	CATG	8 cut(s)	161, 239, 329, 506, 578, 607, 628, 676
NlaIV	GGNNCC	1 cut(s)	766
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	5 cut(s)	239, 506, 578, 607, 628
PaeI	GCATGC	1 cut(s)	506
PciI	ACATGT	2 cut(s)	574, 603
PciSI	GCTCTTC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	674, 765
PfeI	GAWTC	3 cut(s)	79, 209, 703
PkrI	GCNGC	9 cut(s)	27, 249, 290, 391, 501, 542, 822, 891, 963
PleI	GAGTC	2 cut(s)	215, 411
PmeI	GTTTAAAC	1 cut(s)	610
PpsI	GAGTC	2 cut(s)	215, 411
PscI	ACATGT	2 cut(s)	574, 603
Psp124BI	GAGCTC	2 cut(s)	651, 936
PspN4I	GGNNCC	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	629
SacI	GAGCTC	2 cut(s)	651, 936
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	123, 609
SatI	GCNGC	9 cut(s)	26, 248, 289, 390, 500, 541, 821, 890, 962
Sau3AI	GATC	5 cut(s)	190, 756, 764, 849, 882
SchI	GAGTC	2 cut(s)	215, 411
ScrFI	CCNGG	1 cut(s)	952
SduI	GDGCHC	5 cut(s)	651, 664, 912, 936, 957
SfaNI	GCATC	2 cut(s)	68, 319
SfcI	CTRYAG	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	3 cut(s)	122, 296, 350
SmoI	CTYRAG	3 cut(s)	122, 296, 350
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	6 cut(s)	86, 148, 174, 341, 399, 425
SsiI	CCGC	6 cut(s)	541, 635, 691, 716, 921, 937
SspMI	CTAG	2 cut(s)	785, 968
SstI	GAGCTC	2 cut(s)	651, 936
StyD4I	CCNGG	1 cut(s)	950
TaqI	TCGA	2 cut(s)	21, 420
TasI	AATT	6 cut(s)	86, 148, 174, 341, 399, 425
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	3 cut(s)	79, 209, 703
Tru1I	TTAA	2 cut(s)	123, 609
Tru9I	TTAA	2 cut(s)	123, 609
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	8 cut(s)	25, 247, 288, 389, 499, 820, 889, 961
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	174, 606
TspGWI	ACGGA	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	148, 174
XceI	RCATGY	5 cut(s)	239, 506, 578, 607, 628
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	2 cut(s)	785, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.