FvH4_7g26161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004912
Physical Location & Seq
Reverse (-)
19855002 .. 19858278
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26161.t1

Sequence Viewer

Length: 1383 bp
ATGGGGACATCAGATTTGAAGAAGTTGGATTCATGTGAGCAGGAAAACAATGCGAGTCAAGATGGTTCTATATTGCTGGTTGAAAATCTTGAAGAGATGGACCAGAGAATTAAGCAAATGCTTAAGCTGATCAAAGGAGATGGTGATTCTTTGCCTAAAAATGTTGCAGAAGATTCCCATAAGAAGCCAGAGTTGATTGAGGAATTTCAGCAATTGTATCGATCACTGGCTGGGTGCTATGGTCACTTGACAAAAGAAGCACATGTGCAGACTCCTGATGGAAAGGGTTGGGAGAGGATTATTGAACTAGAGGATGAAGTTTCCAGCATGAAAGAGAAGCTCCAGACAAGGGAGGCTGATCTTGAACAGGAGAAAAGACGGGTATCCGATATGCAAAAACAGATTGCTGAGTTAAAGAGTTGTGCATCAGAAAAAGATAATGACATTGGTAGATTGGTGAGAGAGTTGGAAGTAACTACAGCAAGGCTTAAGGGCTCAGATGAGGAGAATGCAAAATTAAAGGAGGAGGTTACTGAGAAAGTGTCGGAAGGCGTTAAAGAAATGCAAGGTCATCTTGAAGTGGCTGAGGAAGACATAGCTATGTTGGAAGCTCAACTTGACTCGGAGAGGAAGCATGTTTTGGAGCTGCAGGAGAGGATTGTGAAGTACAATGCTGATGTGGTTGGCCGCGATCTTGAGTTGATGGAATTGAAGAGTGCATTGCATGATGCACAGGAACAGTTCTCTCTGGAGAAAGCAGACCTGCAGTTTCATATTTCTGGTTTGTCAGAGAATCAAACCATCCTGGAGACCAGACTTGATGAATCGGAGTGGAAGAACAAGAATCTAGAAGATGAAATAAGGCAACACCAAACTGATAAGATGGAGCTGGAAAAGATGCGTGTTGCACAAGAGATGGTTTTGCAAGGTGAAATAAGTTGGCTGAAGGGAGAACTCGCTGAGCAAGGAAAACATGTGGAAGCTGTGAATAAGGACTTTGACAAATTCAAACTGAAATATGATATGCTAATGGCAGAGAAGGATGAGCTCAATGCTAAGGTTCAGACACTTCTGGCGAATGTGAGTTGCCGTGATGATCAAATTAGGGAATTGGAAGGACATCTACGCCGGTTACATACAGAACATGATGATCTGATTGCTGGGTCTGAAAGTGCGCGCAAGTTGGTAGATGAACTGAAGTTGAGAGTGGAGGAGTTGCAGGAAGAGGTGAATAGGCAGAGAGTTGTAATCTCAGATGGGGCAGAGGAGAAAAGAGAGGCTATACGACAACTATGTTTCTCACTGGAGCATTATAGGAGTGGATACAAAGAACTTCACCAAGCATTTAAAGGGCACAAGTGGCAAGCAGTTCCTGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 KIP1

Protein Analysis

461

Amino Acids

53.08

Weight (kDa)

4.98

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 20 - 80 2.3e-12 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 771
AccII CGCG 2 cut(s) 690, 1177
AciI CCGC 1 cut(s) 688
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 2 cut(s) 203, 1004
AcuI CTGAAG 2 cut(s) 965, 1217
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 349
AflII CTTAAG 2 cut(s) 122, 488
AflIII ACRYGT 2 cut(s) 262, 973
AgsI TTSAA 8 cut(s) 19, 83, 92, 305, 365, 578, 712, 1009
AjnI CCWGG 1 cut(s) 804
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 8 cut(s) 127, 340, 599, 611, 646, 889, 983, 1048
AluI AGCT 8 cut(s) 127, 340, 599, 611, 646, 889, 983, 1048
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 1 cut(s) 803
AlwNI CAGNNNCTG 1 cut(s) 1373
AoxI GGCC 1 cut(s) 685
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 2 cut(s) 203, 1004
ArsI GACNNNNNNTTYG 1 cut(s) 30
AspLEI GCGC 2 cut(s) 1177, 1179
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 5 cut(s) 155, 469, 941, 1240, 1328
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 1356
BanII GRGCYC 2 cut(s) 497, 1050
BarI GAAGNNNNNNTAC 2 cut(s) 1107, 1139
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 1050
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 633
BccI CCATC 9 cut(s) 56, 91, 134, 272, 697, 809, 877, 910, 1250
BceAI ACGGC 1 cut(s) 1074
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 806
BciVI GTATCC 2 cut(s) 394, 1316
BclI TGATCA 2 cut(s) 129, 1096
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 2 cut(s) 308, 848
BfmI CTRYAG 3 cut(s) 477, 647, 764
BfrI CTTAAG 2 cut(s) 122, 488
BfuAI ACCTGC 1 cut(s) 771
BfuI GTATCC 2 cut(s) 394, 1316
BisI GCNGC 2 cut(s) 647, 688
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 2 cut(s) 648, 689
Bme1390I CCNGG 1 cut(s) 806
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 806
BmsI GCATC 3 cut(s) 434, 718, 888
BpiI GAAGAC 1 cut(s) 597
BpmI CTGGAG 4 cut(s) 326, 770, 827, 1325
Bpu10I CCTNAGC 2 cut(s) 585, 1056
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 716
Bsa29I ATCGAT 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 803
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 1128
Bse1I ACTGG 2 cut(s) 231, 1308
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 806
BseCI ATCGAT 1 cut(s) 220
BseGI GGATG 3 cut(s) 319, 801, 1048
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 6 cut(s) 399, 510, 525, 576, 951, 1266
BseNI ACTGG 2 cut(s) 231, 1308
BsePI GCGCGC 1 cut(s) 1175
BseRI GAGGAG 4 cut(s) 518, 539, 1226, 1280
BseSI GKGCMC 1 cut(s) 1356
BseXI GCAGC 1 cut(s) 633
BseYI CCCAGC 2 cut(s) 230, 1160
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 690, 1177
BshFI GGCC 1 cut(s) 687
BshVI ATCGAT 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 1 cut(s) 1129
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 1 cut(s) 687
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 3 cut(s) 497, 1050, 1356
Bsp143I GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
Bsp1720I GCTNAGC 1 cut(s) 960
BspACI CCGC 1 cut(s) 688
BspANI GGCC 1 cut(s) 687
BspCNI CTCAG 6 cut(s) 400, 509, 526, 577, 952, 1265
BspDI ATCGAT 1 cut(s) 220
BspFNI CGCG 2 cut(s) 690, 1177
BspMAI CTGCAG 2 cut(s) 651, 768
BspMI ACCTGC 1 cut(s) 771
BspTI CTTAAG 2 cut(s) 122, 488
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 231, 1308
BssAI RCCGGY 1 cut(s) 1128
BssHII GCGCGC 1 cut(s) 1175
BssMI GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
Bst2UI CCWGG 1 cut(s) 806
Bst4CI ACNGT 1 cut(s) 741
Bst6I CTCTTC 3 cut(s) 87, 707, 1218
BstAFI CTTAAG 2 cut(s) 122, 488
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstC8I GCNNGC 2 cut(s) 1177, 1365
BstDEI CTNAG 7 cut(s) 408, 496, 534, 585, 960, 1056, 1252
BstF5I GGATG 3 cut(s) 319, 801, 1048
BstFNI CGCG 2 cut(s) 690, 1177
BstHHI GCGC 2 cut(s) 1177, 1179
BstKTI GATC 6 cut(s) 132, 224, 361, 694, 1099, 1153
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 1360, 1373
BstNI CCWGG 1 cut(s) 806
BstNSI RCATGY 3 cut(s) 266, 638, 977
BstSCI CCNGG 1 cut(s) 804
BstSFI CTRYAG 3 cut(s) 477, 647, 764
BstSLI GKGCMC 1 cut(s) 1356
BstUI CGCG 2 cut(s) 690, 1177
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 220
BsuI GTATCC 2 cut(s) 394, 1316
BsuRI GGCC 1 cut(s) 687
BsuTUI ATCGAT 1 cut(s) 220
BtsCI GGATG 3 cut(s) 319, 801, 1048
BtsIMutI CAGTG 2 cut(s) 224, 1301
BveI ACCTGC 1 cut(s) 771
Cac8I GCNNGC 2 cut(s) 1177, 1365
CaiI CAGNNNCTG 1 cut(s) 1373
CfoI GCGC 2 cut(s) 1177, 1179
Cfr10I RCCGGY 1 cut(s) 1128
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 667
CviAII CATG 7 cut(s) 33, 263, 328, 635, 725, 974, 1145
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 7 cut(s) 408, 496, 534, 585, 960, 1056, 1252
DpnI GATC 6 cut(s) 131, 223, 360, 693, 1098, 1152
DpnII GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
DraI TTTAAA 1 cut(s) 1348
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 3 cut(s) 87, 707, 1218
EarI CTCTTC 3 cut(s) 87, 707, 1218
Ecl136II GAGCTC 1 cut(s) 1048
Eco24I GRGCYC 2 cut(s) 497, 1050
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 1048
Eco57I CTGAAG 2 cut(s) 965, 1217
EcoICRI GAGCTC 1 cut(s) 1048
EcoRII CCWGG 1 cut(s) 804
EcoT38I GRGCYC 2 cut(s) 497, 1050
FaeI CATG 7 cut(s) 36, 266, 331, 638, 728, 977, 1148
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 600, 632
FaqI GGGAC 1 cut(s) 19
FatI CATG 7 cut(s) 32, 262, 327, 634, 724, 973, 1144
FbaI TGATCA 2 cut(s) 129, 1096
Fnu4HI GCNGC 2 cut(s) 647, 688
FokI GGATG 3 cut(s) 326, 788, 1055
FriOI GRGCYC 2 cut(s) 497, 1050
Fsp4HI GCNGC 2 cut(s) 647, 688
FspBI CTAG 2 cut(s) 308, 848
GlaI GCGC 2 cut(s) 1176, 1178
GluI GCNGC 2 cut(s) 647, 688
GsaI CCCAGC 2 cut(s) 234, 1164
GsuI CTGGAG 4 cut(s) 326, 770, 827, 1325
HaeIII GGCC 1 cut(s) 687
HapII CCGG 1 cut(s) 1129
HhaI GCGC 2 cut(s) 1177, 1179
Hin1II CATG 7 cut(s) 36, 266, 331, 638, 728, 977, 1148
Hin6I GCGC 2 cut(s) 1175, 1177
HinP1I GCGC 2 cut(s) 1175, 1177
HinfI GANTC 9 cut(s) 29, 55, 146, 173, 271, 620, 793, 824, 844
HpaII CCGG 1 cut(s) 1129
HphI GGTGA 5 cut(s) 155, 469, 941, 1240, 1328
Hpy188III TCNNGA 9 cut(s) 59, 89, 275, 343, 362, 575, 695, 749, 848
HpyAV CCTTC 4 cut(s) 542, 940, 1033, 1109
HpyCH4III ACNGT 1 cut(s) 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 1360, 1373
HpyF3I CTNAG 7 cut(s) 408, 496, 534, 585, 960, 1056, 1252
Hsp92II CATG 7 cut(s) 36, 266, 331, 638, 728, 977, 1148
HspAI GCGC 2 cut(s) 1175, 1177
Ksp22I TGATCA 2 cut(s) 129, 1096
Kzo9I GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
LmnI GCTCC 4 cut(s) 345, 643, 886, 1306
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 3 cut(s) 434, 718, 888
MaeI CTAG 2 cut(s) 308, 848
MaeIII GTNAC 4 cut(s) 242, 472, 529, 1131
MalI GATC 6 cut(s) 131, 223, 360, 693, 1098, 1152
MboI GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
MboII GAAGA 8 cut(s) 31, 104, 182, 602, 724, 847, 863, 1235
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 3 cut(s) 497, 1050, 1356
MluCI AATT 8 cut(s) 108, 203, 212, 515, 707, 1004, 1101, 1109
MlyI GAGTC 3 cut(s) 64, 265, 614
MmeI TCCRAC 4 cut(s) 6, 447, 525, 585
MseI TTAA 7 cut(s) 111, 123, 413, 489, 518, 555, 1347
MslI CAYNNNNRTG 1 cut(s) 599
MspCI CTTAAG 2 cut(s) 122, 488
MspI CCGG 1 cut(s) 1129
MspR9I CCNGG 1 cut(s) 806
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 1 cut(s) 806
MvnI CGCG 2 cut(s) 690, 1177
MwoI GCNNNNNNNGC 2 cut(s) 1360, 1373
NdeII GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
NlaIII CATG 7 cut(s) 36, 266, 331, 638, 728, 977, 1148
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 3 cut(s) 266, 638, 977
PauI GCGCGC 1 cut(s) 1175
PciI ACATGT 2 cut(s) 262, 973
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 6 cut(s) 29, 146, 173, 793, 824, 844
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 2 cut(s) 648, 689
PleI GAGTC 3 cut(s) 63, 265, 614
PpsI GAGTC 3 cut(s) 63, 265, 614
PscI ACATGT 2 cut(s) 262, 973
Psp124BI GAGCTC 1 cut(s) 1050
Psp6I CCWGG 1 cut(s) 804
PspFI CCCAGC 2 cut(s) 230, 1160
PspGI CCWGG 1 cut(s) 804
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 2 cut(s) 651, 768
PstNI CAGNNNCTG 1 cut(s) 1373
PteI GCGCGC 1 cut(s) 1175
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 1050
SaqAI TTAA 7 cut(s) 111, 123, 413, 489, 518, 555, 1347
SatI GCNGC 2 cut(s) 647, 688
Sau3AI GATC 6 cut(s) 129, 221, 358, 691, 1096, 1150
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 3 cut(s) 64, 265, 614
ScrFI CCNGG 1 cut(s) 806
SduI GDGCHC 3 cut(s) 497, 1050, 1356
SfaNI GCATC 3 cut(s) 434, 718, 888
SfcI CTRYAG 3 cut(s) 477, 647, 764
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 3 cut(s) 122, 488, 695
SmoI CTYRAG 3 cut(s) 122, 488, 695
Sse9I AATT 8 cut(s) 108, 203, 212, 515, 707, 1004, 1101, 1109
SsiI CCGC 1 cut(s) 688
SspMI CTAG 2 cut(s) 308, 848
SstI GAGCTC 1 cut(s) 1050
StyD4I CCNGG 1 cut(s) 804
TaaI ACNGT 1 cut(s) 741
TaqI TCGA 1 cut(s) 220
TasI AATT 8 cut(s) 108, 203, 212, 515, 707, 1004, 1101, 1109
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 6 cut(s) 29, 146, 173, 793, 824, 844
Tru1I TTAA 7 cut(s) 111, 123, 413, 489, 518, 555, 1347
Tru9I TTAA 7 cut(s) 111, 123, 413, 489, 518, 555, 1347
TscAI CASTG 2 cut(s) 231, 1308
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 7 cut(s) 21, 330, 344, 761, 837, 870, 1206
TspRI CASTG 2 cut(s) 231, 1308
Vha464I CTTAAG 2 cut(s) 122, 488
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 2 cut(s) 203, 1004
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 3 cut(s) 266, 638, 977
XspI CTAG 2 cut(s) 308, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.