Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007679

Physical Location & Seq

Genomic Coordinates Reverse (-)

1578869 .. 1580875

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTCAAATAAACTTATTTCGATTCTAGTTCTCGTAGTTACACTTTTACTCCAAGGTGATAACAATTACGTCGTCGAAGCACAACTCACGACTAACTTCTACTCAACCTCTTGCCCCAACCTCCTCTCCACCGTCCAAACCGCCGTTAAATCTGCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGCTTTGTCAACGGATGCGACGGTTCGATTCTACTAGACGATACGTCAAGCTTCACAGGAGAACAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAATCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCTGCTAGAGACTCCGTCGTAGCCCTTGGAGGACCGAACTGGAATGTGAAAGTAGGAAGAAGAGATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCACCGACTTCGAGTCTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCTCTCTCTGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTACAACGAGACAAACATCAATGCCGCCTTCGCCACGACACGTCAACGAACTTGCCCTAGAGCCTCCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCAGCTTCTTTCGACAACAACTACTTCAAGAATCTCATGACTCAGAGAGGGCTCCTCCATTCCGACCAAGTGCTCTTCAACGGCGGCTCTACTGACTCCATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTTAACTCTGACTTCACGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGTAGCGGTGAAATCCGCAAGGTTTGCGGGAGGACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

324

Amino Acids

34.22

Weight (kDa)

8.65

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 288	4.5e-88	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05340
fragaria_vesca	FvH4_7g25570 FvH4_7g25571
malus_domestica	MD01G1162700.v1.1 MD07G1230700.v1.1 MD07G1230900.v1.1
prunus_persica	Prupe.2G260800_v2.0.a1 Prupe.2G260900_v2.0.a1
pyrus_communis	pycom01g17760 pycom07g20830
rosa_chinensis	RchiOBHm_Chr1g0371621 RchiOBHm_Chr1g0371631
rosa_laevigata	RLG00000026950 RLG00000026951
rosa_multiflora	Rmu_sc0000809.1_g000001 Rmu_sc0001916.1_g000015 Rmu_sc0040538.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285530
rosa_rugosa	Rorug01G0365400
rosa_samantha	Rh1AG375500 Rh1CG352100 Rh1DG370000
rosa_wichuraiana	Rw1G033030 Rw1G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AatII	GACGTC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	502
AccII	CGCG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	732
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	9, 769, 820
AhdI	GACNNNNNGTC	2 cut(s)	256, 513
AjiI	CACGTC	1 cut(s)	674
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	5 cut(s)	264, 305, 722, 746, 873
AluI	AGCT	5 cut(s)	264, 305, 722, 746, 873
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	3 cut(s)	203, 396, 635
Ama87I	CYCGRG	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	395, 482, 743
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	425, 966
AsuC2I	CCSGG	2 cut(s)	360, 361
AsuHPI	GGTGA	4 cut(s)	71, 727, 923, 953
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	425, 966
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	795
BauI	CACGAG	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	3 cut(s)	382, 494, 755
BccI	CCATC	1 cut(s)	848
BceAI	ACGGC	6 cut(s)	131, 143, 483, 756, 838, 906
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciVI	GTATCC	1 cut(s)	845
BcnI	CCSGG	2 cut(s)	360, 361
BcoDI	GTCTC	3 cut(s)	203, 396, 635
BfaI	CTAG	6 cut(s)	29, 248, 399, 690, 719, 728
BfuI	GTATCC	1 cut(s)	845
BisI	GCNGC	8 cut(s)	285, 396, 480, 483, 657, 744, 826, 894
BlsI	GCNGC	8 cut(s)	286, 397, 481, 484, 658, 745, 827, 895
Bme1390I	CCNGG	2 cut(s)	360, 361
Bme18I	GGWCC	2 cut(s)	425, 966
BmeRI	GACNNNNNGTC	2 cut(s)	256, 513
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	2 cut(s)	425, 966
BmiI	GGNNCC	4 cut(s)	288, 504, 703, 794
BmrFI	CCNGG	2 cut(s)	360, 361
BmsI	GCATC	3 cut(s)	194, 218, 448
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
BpuMI	CCSGG	2 cut(s)	360, 361
BsaHI	GRCGYC	1 cut(s)	732
BsaJI	CCNNGG	6 cut(s)	55, 359, 360, 418, 738, 847
BsaWI	WCCGGW	1 cut(s)	698
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	437, 934
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	6 cut(s)	55, 359, 360, 418, 738, 847
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	509, 797
BseNI	ACTGG	2 cut(s)	437, 934
BseRI	GAGGAG	2 cut(s)	116, 785
BseXI	GCAGC	3 cut(s)	382, 494, 755
Bsh1236I	CGCG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	597
BshNI	GGYRCC	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	360, 500, 699, 705
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	3 cut(s)	203, 396, 635
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	795, 816
Bsp143I	GATC	2 cut(s)	321, 594
BspCNI	CTCAG	2 cut(s)	510, 796
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	288, 504, 703, 794
BspQI	GCTCTTC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	437, 934
BssECI	CCNNGG	6 cut(s)	55, 359, 360, 418, 738, 847
BssMI	GATC	2 cut(s)	321, 594
BssNI	GRCGYC	1 cut(s)	732
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	55, 418
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	136, 236
Bst6I	CTCTTC	3 cut(s)	206, 448, 821
BstACI	GRCGYC	1 cut(s)	732
BstAPI	GCANNNNNTGC	1 cut(s)	957
BstDEI	CTNAG	3 cut(s)	385, 518, 783
BstDSI	CCRYGG	2 cut(s)	738, 847
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	2 cut(s)	324, 597
BstMAI	GTCTC	3 cut(s)	203, 396, 635
BstMBI	GATC	2 cut(s)	321, 594
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 467, 476, 662, 957
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	358, 359
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	382, 494, 755
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	845
BtgI	CCRYGG	2 cut(s)	738, 847
BtgZI	GCGATG	1 cut(s)	911
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	2 cut(s)	425, 966
Cfr9I	CCCGGG	1 cut(s)	359
CviAII	CATG	2 cut(s)	354, 778
DdeI	CTNAG	3 cut(s)	385, 518, 783
DpnI	GATC	2 cut(s)	323, 596
DpnII	GATC	2 cut(s)	321, 594
DrdI	GACNNNNNNGTC	1 cut(s)	842
DriI	GACNNNNNGTC	2 cut(s)	256, 513
DseDI	GACNNNNNNGTC	1 cut(s)	842
Eam1104I	CTCTTC	3 cut(s)	206, 448, 821
Eam1105I	GACNNNNNGTC	2 cut(s)	256, 513
EarI	CTCTTC	3 cut(s)	206, 448, 821
Eco130I	CCWWGG	2 cut(s)	55, 418
Eco24I	GRGCYC	1 cut(s)	795
Eco32I	GATATC	2 cut(s)	382, 916
Eco47I	GGWCC	2 cut(s)	425, 966
Eco88I	CYCGRG	1 cut(s)	359
EcoRV	GATATC	2 cut(s)	382, 916
EcoT14I	CCWWGG	2 cut(s)	55, 418
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	2 cut(s)	55, 418
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	357, 781
FaiI	YATR	3 cut(s)	355, 569, 779
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	353, 777
FauI	CCCGC	1 cut(s)	953
Fnu4HI	GCNGC	8 cut(s)	285, 396, 480, 483, 657, 744, 826, 894
FokI	GGATG	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	8 cut(s)	285, 396, 480, 483, 657, 744, 826, 894
FspBI	CTAG	6 cut(s)	29, 248, 399, 690, 719, 728
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	8 cut(s)	285, 396, 480, 483, 657, 744, 826, 894
HapII	CCGG	4 cut(s)	360, 500, 699, 705
HhaI	GCGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	2 cut(s)	357, 781
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	4 cut(s)	163, 223, 677, 927
HindII	GTYRAC	4 cut(s)	163, 223, 677, 927
HindIII	AAGCTT	1 cut(s)	262
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	4 cut(s)	360, 500, 699, 705
HphI	GGTGA	4 cut(s)	71, 727, 923, 953
Hpy166II	GTNNAC	4 cut(s)	163, 223, 677, 927
Hpy188I	TCNGA	6 cut(s)	519, 599, 623, 786, 805, 883
Hpy188III	TCNNGA	3 cut(s)	91, 769, 778
Hpy8I	GTNNAC	4 cut(s)	163, 223, 677, 927
Hpy99I	CGWCG	6 cut(s)	77, 80, 236, 413, 713, 871
HpyAV	CCTTC	1 cut(s)	670
HpyCH4III	ACNGT	2 cut(s)	136, 236
HpyCH4IV	ACGT	4 cut(s)	72, 257, 673, 732
HpyCH4V	TGCA	3 cut(s)	185, 461, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 467, 476, 662, 957
HpyF3I	CTNAG	3 cut(s)	385, 518, 783
HpySE526I	ACGT	4 cut(s)	72, 257, 673, 732
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	2 cut(s)	357, 781
HspAI	GCGC	1 cut(s)	585
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	321, 594
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	3 cut(s)	292, 727, 798
LpnPI	CCDG	9 cut(s)	255, 373, 418, 513, 567, 574, 712, 718, 915
Lsp1109I	GCAGC	3 cut(s)	382, 494, 755
LweI	GCATC	3 cut(s)	194, 218, 448
MaeI	CTAG	6 cut(s)	29, 248, 399, 690, 719, 728
MaeII	ACGT	4 cut(s)	72, 257, 673, 732
MaeIII	GTNAC	3 cut(s)	40, 491, 733
MalI	GATC	2 cut(s)	323, 596
MboI	GATC	2 cut(s)	321, 594
MboII	GAAGA	5 cut(s)	193, 196, 462, 465, 808
MhlI	GDGCHC	2 cut(s)	795, 816
MluCI	AATT	2 cut(s)	67, 298
MlyI	GAGTC	6 cut(s)	398, 481, 523, 546, 775, 830
MmeI	TCCRAC	2 cut(s)	529, 828
MseI	TTAA	4 cut(s)	150, 162, 315, 876
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	4 cut(s)	360, 500, 699, 705
MspR9I	CCNGG	2 cut(s)	360, 361
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	5 cut(s)	395, 467, 476, 662, 957
NciI	CCSGG	2 cut(s)	360, 361
NdeII	GATC	2 cut(s)	321, 594
NlaIII	CATG	2 cut(s)	357, 781
NlaIV	GGNNCC	4 cut(s)	288, 504, 703, 794
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	357
PagI	TCATGA	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	821
PfeI	GAWTC	4 cut(s)	25, 241, 630, 772
PflFI	GACNNNGTC	1 cut(s)	407
PkrI	GCNGC	8 cut(s)	286, 397, 481, 484, 658, 745, 827, 895
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	6 cut(s)	398, 480, 522, 546, 775, 830
PpsI	GAGTC	6 cut(s)	398, 480, 522, 546, 775, 830
PspN4I	GGNNCC	4 cut(s)	288, 504, 703, 794
PspPI	GGNCC	2 cut(s)	425, 966
PsyI	GACNNNGTC	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	4 cut(s)	150, 162, 315, 876
SatI	GCNGC	8 cut(s)	285, 396, 480, 483, 657, 744, 826, 894
Sau3AI	GATC	2 cut(s)	321, 594
Sau96I	GGNCC	2 cut(s)	425, 966
SchI	GAGTC	6 cut(s)	398, 481, 523, 546, 775, 830
ScrFI	CCNGG	2 cut(s)	360, 361
SduI	GDGCHC	2 cut(s)	795, 816
SfaNI	GCATC	3 cut(s)	194, 218, 448
SinI	GGWCC	2 cut(s)	425, 966
SmaI	CCCGGG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	67, 298
SspMI	CTAG	6 cut(s)	29, 248, 399, 690, 719, 728
StyD4I	CCNGG	2 cut(s)	358, 359
StyI	CCWWGG	2 cut(s)	55, 418
TaaI	ACNGT	2 cut(s)	136, 236
TaiI	ACGT	4 cut(s)	75, 260, 676, 735
TaqI	TCGA	8 cut(s)	23, 78, 175, 239, 324, 512, 753, 869
TaqII	GACCGA	1 cut(s)	442
TasI	AATT	2 cut(s)	67, 298
TauI	GCSGC	5 cut(s)	287, 482, 659, 828, 896
TfiI	GAWTC	4 cut(s)	25, 241, 630, 772
Tru1I	TTAA	4 cut(s)	150, 162, 315, 876
Tru9I	TTAA	4 cut(s)	150, 162, 315, 876
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	3 cut(s)	395, 482, 743
Tsp45I	GTSAC	1 cut(s)	733
TspGWI	ACGGA	6 cut(s)	185, 240, 397, 726, 836, 855
TspMI	CCCGGG	1 cut(s)	359
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	425, 966
XceI	RCATGY	1 cut(s)	357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmaI	CCCGGG	1 cut(s)	359
XspI	CTAG	6 cut(s)	29, 248, 399, 690, 719, 728
ZraI	GACGTC	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.