Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040538.1

Orthogroup ID

OG0007679

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040538.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atgcagcttggagggccaaaatgggaagtccaattgggaagattagacgcgagggctacaaaccccatcatcgccaacatcagcataccaacttcaaaagatagcctaaacgagctcatcttgagatttagcggcgccgccctcaaccagcgagacctggttgctctgtcaggcgctcacacactcggccaagcacagtgttacaacttcaggaaacgcatatacaacgaggacaacatcaacaatgactttgccgaacaaggaagagctaaatgtccgaagacccctggctccggtgacgccattttggctcccatcgacgctgaaactccgactgtgttcgacaacagctactacaagaaccttgtccagaagaaggggccactccattccgatcagcagttgttcagcggagggcaaacaggttcactagtgaaaacttacagtgaaagccaggaaagcttcttcatggactttgtgattgctatgctcaagatggggagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

168

Amino Acids

18.43

Weight (kDa)

6.72

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05340
fragaria_vesca	FvH4_7g25570 FvH4_7g25571
malus_domestica	MD01G1162700.v1.1 MD07G1230700.v1.1 MD07G1230900.v1.1
prunus_persica	Prupe.2G260800_v2.0.a1 Prupe.2G260900_v2.0.a1
pyrus_communis	pycom01g17760 pycom07g20830
rosa_chinensis	RchiOBHm_Chr1g0371621 RchiOBHm_Chr1g0371631
rosa_laevigata	RLG00000026950 RLG00000026951
rosa_multiflora	Rmu_sc0000809.1_g000001 Rmu_sc0001916.1_g000015 Rmu_sc0040538.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285530
rosa_rugosa	Rorug01G0365400
rosa_samantha	Rh1AG375500 Rh1CG352100 Rh1DG370000
rosa_wichuraiana	Rw1G033030 Rw1G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	132, 138, 411
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	2 cut(s)	135, 300
AfiI	CCNNNNNNNGG	2 cut(s)	293, 376
AgsI	TTSAA	1 cut(s)	96
AhlI	ACTAGT	1 cut(s)	430
AjnI	CCWGG	3 cut(s)	156, 286, 453
AluBI	AGCT	5 cut(s)	7, 115, 269, 351, 462
AluI	AGCT	5 cut(s)	7, 115, 269, 351, 462
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	3 cut(s)	14, 187, 380
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	137, 176
AspS9I	GGNCC	2 cut(s)	14, 380
AsuHPI	GGTGA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	74, 323, 490
BciT130I	CCWGG	3 cut(s)	158, 288, 455
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	2 cut(s)	138, 177
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	3 cut(s)	5, 133, 138
BlsI	GCNGC	3 cut(s)	6, 134, 139
Bme1390I	CCNGG	3 cut(s)	158, 288, 455
BmgT120I	GGNCC	2 cut(s)	14, 380
BmiI	GGNNCC	4 cut(s)	136, 292, 312, 381
BmrFI	CCNGG	3 cut(s)	158, 288, 455
BpiI	GAAGAC	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	142, 476
BsaHI	GRCGYC	2 cut(s)	135, 300
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 376
BseBI	CCWGG	3 cut(s)	158, 288, 455
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	293, 376
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	16, 189, 382
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	293, 376
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	16, 189, 382
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	132, 138, 411
BspANI	GGCC	3 cut(s)	16, 189, 382
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	4 cut(s)	136, 292, 312, 381
BspQI	GCTCTTC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	394
BssNI	GRCGYC	2 cut(s)	135, 300
Bst2UI	CCWGG	3 cut(s)	158, 288, 455
Bst4CI	ACNGT	3 cut(s)	198, 337, 446
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	2 cut(s)	135, 300
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	2 cut(s)	138, 177
BstHHI	GCGC	2 cut(s)	137, 176
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 308, 459
BstNI	CCWGG	3 cut(s)	158, 288, 455
BstSCI	CCNGG	3 cut(s)	156, 286, 453
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	16, 189, 382
BtgZI	GCGATG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	203, 451
CfoI	GCGC	2 cut(s)	137, 176
Cfr13I	GGNCC	2 cut(s)	14, 380
CseI	GACGC	3 cut(s)	56, 308, 329
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	1 cut(s)	469
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	156, 286, 453
EcoT38I	GRGCYC	1 cut(s)	117
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
FaeI	CATG	1 cut(s)	472
FaiI	YATR	5 cut(s)	86, 221, 223, 470, 488
FatI	CATG	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	5, 133, 138
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	5, 133, 138
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	2 cut(s)	136, 175
GluI	GCNGC	3 cut(s)	5, 133, 138
HaeII	RGCGCY	2 cut(s)	138, 177
HaeIII	GGCC	3 cut(s)	16, 189, 382
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	3 cut(s)	56, 308, 329
HhaI	GCGC	2 cut(s)	137, 176
Hin1I	GRCGYC	2 cut(s)	135, 300
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	2 cut(s)	135, 174
HinP1I	GCGC	2 cut(s)	135, 174
HindIII	AAGCTT	1 cut(s)	460
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	279, 333, 394
Hpy188III	TCNNGA	4 cut(s)	121, 211, 370, 493
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	3 cut(s)	198, 337, 446
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 308, 459
Hsp92I	GRCGYC	2 cut(s)	135, 300
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	2 cut(s)	135, 174
KasI	GGCGCC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	296, 316, 501
Lsp1109I	GCAGC	1 cut(s)	16
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	200, 296
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	5 cut(s)	51, 276, 292, 385, 457
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	32
Mly113I	GGCGCC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	5, 45, 152, 223, 407
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	158, 288, 455
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	3 cut(s)	158, 288, 455
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	13, 308, 459
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	4 cut(s)	136, 292, 312, 381
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	6, 134, 139
PluTI	GGCGCC	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	156, 286, 453
PspGI	CCWGG	3 cut(s)	156, 286, 453
PspN4I	GGNNCC	4 cut(s)	136, 292, 312, 381
PspPI	GGNCC	2 cut(s)	14, 380
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	259
SatI	GCNGC	3 cut(s)	5, 133, 138
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	14, 380
ScrFI	CCNGG	3 cut(s)	158, 288, 455
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	9, 117, 159, 271, 353, 366, 427, 464
SexAI	ACCWGGT	1 cut(s)	156
SfoI	GGCGCC	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	121, 491
SmoI	CTYRAG	2 cut(s)	121, 491
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	132, 138, 411
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	156, 286, 453
TaaI	ACNGT	3 cut(s)	198, 337, 446
TaqI	TCGA	2 cut(s)	318, 342
TasI	AATT	1 cut(s)	32
TauI	GCSGC	2 cut(s)	135, 140
TscAI	CASTG	2 cut(s)	203, 451
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	203, 451
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.