MD07G1230900.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0007679
Physical Location & Seq
Forward (+)
30512492 .. 30513857
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1230900.v1.1.491

Sequence Viewer

Length: 990 bp
ATGAGATCAATGGCTTCCTCTTACTCCTTCATGGCCATTGTGACCTTGTCTTTCCTAATCGTGCACGTTGACGTAGTGAAAAGTGATGGACTCTCAACAACTTATTATGCATCATCTTGCCCAAAGCTCTTCCCTACTGTGAAATCCATAGTCGAATCCGCAATAAAAAAAGAGGCTCGAATGGGAGCCTCTCTCCTCCGCCTCTTCTTCCATGACTGTTTTGTTAATGGATGTGATGGGTCGGTGCTCCTGGATGATGCGCCTAACTTTATTGGAGAGAAAAATGTACCTCCTAATAAGAATTCTTCAAGGGGATTTGAAGTCATTGATGAAGTCAAGTCTGCAGTAGAGAAAGTGTGCCCCGGCACCGTATCATGTGCTGACATAGTGGCCACTGTTGCTAGAGACTCTGTTGTCATGCTTGGCGGGCCAAGTTGGGGCATTCAACTGGGAAGAAAAGACGCTAGGGCTACAAACCCAGTTGTTACTAATGTCAGCATACCCACCGCAAGGGCTAACCTAAAGGAGCTCATCCTTAGATTCAGTGGTATTGCACTCAACAAGAGGGACTTGGTTGCTCTATCTGGTAGAGCTCATACACTTGGGCAAGCACAATGCCACAACTTCAGAAAGCGGATATACAATGAAACCAACATAGACACAGATCTAGCACAACAAAGAAGATCAAAATGCCCTAAAGCCAAAGGCTCAGGGGATCATCATTTGGCTCCGATTGATGCTCAAACCCCGATAGTGTTCGACAACAGCTACTACAAAAACCTTGTCCAGAAAAAAGGACTCCTCCATTCCGATCAGCAGTTGTTCAGTGGAGGCAAAACTGACTCCATCGTACGTGAGTATAGTGAACACCAGGAATCCTTCTTTAACGACTTTGTGTCAGCAATGATCAAGATGGGAACCATCAACCCCCTCATTGGACCGGCTGGCGAGATTAGATTGAATTGCAGGAGGATTAACCCCATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

330

Amino Acids

36.04

Weight (kDa)

9.14

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 289 6e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 5 cut(s) 159, 199, 426, 507, 634
AclWI GGATC 1 cut(s) 723
AcoI YGGCCR 2 cut(s) 33, 390
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 610
AfaI GTAC 2 cut(s) 288, 852
AfiI CCNNNNNNNGG 3 cut(s) 437, 510, 935
AgsI TTSAA 4 cut(s) 309, 320, 446, 961
AhdI GACNNNNNGTC 1 cut(s) 895
AjnI CCWGG 2 cut(s) 249, 870
AluBI AGCT 4 cut(s) 127, 529, 593, 768
AluI AGCT 4 cut(s) 127, 529, 593, 768
Alw21I GWGCWC 4 cut(s) 66, 249, 531, 595
Alw26I GTCTC 1 cut(s) 399
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 723
AoxI GGCC 3 cut(s) 33, 390, 428
ApaLI GTGCAC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 428, 938
AsuC2I CCSGG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 938
BaeGI GKGCMC 2 cut(s) 66, 362
BalI TGGCCA 2 cut(s) 35, 392
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 531, 595
Bbv12I GWGCWC 4 cut(s) 66, 249, 531, 595
BccI CCATC 6 cut(s) 80, 230, 854, 907, 929, 989
BciT130I CCWGG 2 cut(s) 251, 872
BclI TGATCA 1 cut(s) 906
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 3 cut(s) 402, 465, 668
BfmI CTRYAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 664
Bme1390I CCNGG 3 cut(s) 251, 363, 872
Bme18I GGWCC 1 cut(s) 938
BmeRI GACNNNNNGTC 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 428, 938
BmiI GGNNCC 4 cut(s) 187, 367, 729, 919
BmrFI CCNGG 3 cut(s) 251, 363, 872
BmrI ACTGGG 2 cut(s) 458, 473
BmsI GCATC 3 cut(s) 119, 247, 727
BmuI ACTGGG 2 cut(s) 458, 473
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu10I CCTNAGC 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 854
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 510, 935
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 2 cut(s) 453, 479
Bse3DI GCAATG 1 cut(s) 909
BseBI CCWGG 2 cut(s) 251, 872
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 236, 259, 531
BseLI CCNNNNNNNGG 3 cut(s) 437, 510, 935
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 2 cut(s) 453, 479
BseRI GAGGAG 2 cut(s) 185, 791
BseSI GKGCMC 2 cut(s) 66, 362
BshFI GGCC 3 cut(s) 35, 392, 430
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 4 cut(s) 66, 249, 531, 595
BsiSI CCGG 2 cut(s) 363, 941
BsiWI CGTACG 1 cut(s) 850
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 437, 510, 935
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 3 cut(s) 35, 392, 430
Bsp1286I GDGCHC 5 cut(s) 66, 249, 362, 531, 595
Bsp143I GATC 6 cut(s) 5, 664, 683, 715, 811, 906
BspACI CCGC 5 cut(s) 159, 199, 426, 507, 634
BspANI GGCC 3 cut(s) 35, 392, 430
BspCNI CTCAG 1 cut(s) 722
BspLI GGNNCC 4 cut(s) 187, 367, 729, 919
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 723
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 940
BsrI ACTGG 2 cut(s) 453, 479
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 6 cut(s) 5, 664, 683, 715, 811, 906
Bst2UI CCWGG 2 cut(s) 251, 872
Bst4CI ACNGT 4 cut(s) 139, 218, 370, 397
Bst6I CTCTTC 2 cut(s) 134, 209
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 3 cut(s) 428, 609, 946
BstDEI CTNAG 2 cut(s) 536, 709
BstF5I GGATG 3 cut(s) 236, 259, 531
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 6 cut(s) 8, 667, 686, 718, 814, 909
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 6 cut(s) 5, 664, 683, 715, 811, 906
BstMWI GCNNNNNNNGC 2 cut(s) 398, 427
BstNI CCWGG 2 cut(s) 251, 872
BstSCI CCNGG 3 cut(s) 249, 361, 870
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 2 cut(s) 66, 362
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 3 cut(s) 35, 392, 430
BtsCI GGATG 3 cut(s) 236, 259, 531
BtsIMutI CAGTG 3 cut(s) 393, 550, 832
Cac8I GCNNGC 3 cut(s) 428, 609, 946
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 2 cut(s) 428, 938
CseI GACGC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 287, 851
CviAII CATG 4 cut(s) 31, 212, 375, 418
CviQI GTAC 2 cut(s) 287, 851
DdeI CTNAG 2 cut(s) 536, 709
DpnI GATC 6 cut(s) 7, 666, 685, 717, 813, 908
DpnII GATC 6 cut(s) 5, 664, 683, 715, 811, 906
DrdI GACNNNNNNGTC 1 cut(s) 413
DriI GACNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 2 cut(s) 33, 390
Eam1104I CTCTTC 2 cut(s) 134, 209
Eam1105I GACNNNNNGTC 1 cut(s) 895
EarI CTCTTC 2 cut(s) 134, 209
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 2 cut(s) 529, 593
Eco24I GRGCYC 2 cut(s) 531, 595
Eco47I GGWCC 1 cut(s) 938
Eco53kI GAGCTC 2 cut(s) 529, 593
Eco57I CTGAAG 1 cut(s) 610
EcoICRI GAGCTC 2 cut(s) 529, 593
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 249, 870
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 2 cut(s) 531, 595
FaeI CATG 4 cut(s) 34, 215, 378, 421
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 30, 211, 374, 417
FauI CCCGC 1 cut(s) 419
FbaI TGATCA 1 cut(s) 906
FokI GGATG 3 cut(s) 243, 266, 518
FriOI GRGCYC 2 cut(s) 531, 595
FspBI CTAG 3 cut(s) 402, 465, 668
GlaI GCGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 35, 392, 430
HapII CCGG 2 cut(s) 363, 941
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 34, 215, 378, 421
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 7 cut(s) 90, 155, 407, 540, 798, 842, 875
HpaII CCGG 2 cut(s) 363, 941
Hpy166II GTNNAC 3 cut(s) 64, 70, 866
Hpy188I TCNGA 3 cut(s) 629, 732, 811
Hpy188III TCNNGA 2 cut(s) 787, 910
Hpy8I GTNNAC 3 cut(s) 64, 70, 866
HpyAV CCTTC 2 cut(s) 37, 889
HpyCH4III ACNGT 4 cut(s) 139, 218, 370, 397
HpyCH4IV ACGT 3 cut(s) 66, 72, 853
HpyCH4V TGCA 5 cut(s) 64, 110, 344, 554, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 427
HpyF3I CTNAG 2 cut(s) 536, 709
HpySE526I ACGT 3 cut(s) 66, 72, 853
Hsp92II CATG 4 cut(s) 34, 215, 378, 421
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 6 cut(s) 5, 664, 683, 715, 811, 906
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 4 cut(s) 185, 252, 526, 733
LweI GCATC 3 cut(s) 119, 247, 727
MaeI CTAG 3 cut(s) 402, 465, 668
MaeII ACGT 3 cut(s) 66, 72, 853
MaeIII GTNAC 2 cut(s) 40, 484
MalI GATC 6 cut(s) 7, 666, 685, 717, 813, 908
MboI GATC 6 cut(s) 5, 664, 683, 715, 811, 906
MboII GAAGA 6 cut(s) 121, 196, 199, 297, 465, 693
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 5 cut(s) 66, 249, 362, 531, 595
MlsI TGGCCA 2 cut(s) 35, 392
MluCI AATT 2 cut(s) 301, 961
MluNI TGGCCA 2 cut(s) 35, 392
MlyI GAGTC 4 cut(s) 84, 401, 792, 836
Mox20I TGGCCA 2 cut(s) 35, 392
Mph1103I ATGCAT 1 cut(s) 112
MscI TGGCCA 2 cut(s) 35, 392
MseI TTAA 3 cut(s) 225, 885, 975
Msp20I TGGCCA 2 cut(s) 35, 392
MspI CCGG 2 cut(s) 363, 941
MspR9I CCNGG 3 cut(s) 251, 363, 872
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 2 cut(s) 251, 872
MwoI GCNNNNNNNGC 2 cut(s) 398, 427
NciI CCSGG 1 cut(s) 363
NdeII GATC 6 cut(s) 5, 664, 683, 715, 811, 906
NlaIII CATG 4 cut(s) 34, 215, 378, 421
NlaIV GGNNCC 4 cut(s) 187, 367, 729, 919
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 134
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 3 cut(s) 155, 540, 875
Pfl23II CGTACG 1 cut(s) 850
PflFI GACNNNGTC 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 249
PleI GAGTC 4 cut(s) 84, 401, 792, 836
PpsI GAGTC 4 cut(s) 84, 401, 792, 836
Ppu21I YACGTR 1 cut(s) 854
Psp124BI GAGCTC 2 cut(s) 531, 595
Psp6I CCWGG 2 cut(s) 249, 870
PspGI CCWGG 2 cut(s) 249, 870
PspLI CGTACG 1 cut(s) 850
PspN4I GGNNCC 4 cut(s) 187, 367, 729, 919
PspPI GGNCC 2 cut(s) 428, 938
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 46
RsaI GTAC 2 cut(s) 288, 852
RsaNI GTAC 2 cut(s) 287, 851
SacI GAGCTC 2 cut(s) 531, 595
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 225, 885, 975
Sau3AI GATC 6 cut(s) 5, 664, 683, 715, 811, 906
Sau96I GGNCC 2 cut(s) 428, 938
SchI GAGTC 4 cut(s) 84, 401, 792, 836
ScrFI CCNGG 3 cut(s) 251, 363, 872
SduI GDGCHC 5 cut(s) 66, 249, 362, 531, 595
SfaNI GCATC 3 cut(s) 119, 247, 727
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 938
Sse9I AATT 2 cut(s) 301, 961
SsiI CCGC 5 cut(s) 159, 199, 426, 507, 634
SspMI CTAG 3 cut(s) 402, 465, 668
SstI GAGCTC 2 cut(s) 531, 595
StyD4I CCNGG 3 cut(s) 249, 361, 870
TaaI ACNGT 4 cut(s) 139, 218, 370, 397
TaiI ACGT 3 cut(s) 69, 75, 856
TaqI TCGA 3 cut(s) 153, 178, 759
TasI AATT 2 cut(s) 301, 961
TfiI GAWTC 3 cut(s) 155, 540, 875
Tru1I TTAA 3 cut(s) 225, 885, 975
Tru9I TTAA 3 cut(s) 225, 885, 975
TscAI CASTG 3 cut(s) 400, 550, 832
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 19, 345, 660
TspRI CASTG 3 cut(s) 400, 550, 832
Tth111I GACNNNGTC 1 cut(s) 46
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 1 cut(s) 301
XspI CTAG 3 cut(s) 402, 465, 668
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.