Rw1G033040

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007679
Physical Location & Seq
Forward (+)
61205672 .. 61209568
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033040.1

Sequence Viewer

Length: 912 bp
ATGGCCATTTTCATGACCTTGGCTCTGGTTGCGAGCACCGACAGCGCTAGACTTTCGACAGCTTTTTACTCCTCATCTTGTCCAAAGCTCTTCTCCACCGTGAAACGTATAGTCCAATCCGCAATCAATAAGAATCCCCGAATGGGTGCCTGTCTTCTCCACCTATTCTTCCACGATTGTTTTGTTAATGGATGTGATGCGTCGTTGCTCCTGGACGATGCGCCGAACTTTATAGGAGAGAAAAATGTGCCTCCGAACAAGAACTCTGCATGTGGATTCGAAGTCATTGATCAAATCAAGTCCGCCGTCGAGAGAGTGTGCCCGGGCAGAGTCTCTTGTGCCGATATAGTTGCTATTGCAGCAAGAGACACTGTTGGCATTCTTGGAGGGCCAAAATGGGAAGTCCAATTGGGAAGATTAGACGCGAGGGCTACAAACCCCATCATCGCCAACATCAGCATACCAACTTCAAAAGCTAGCCTAAACGAGCTCATCTTGAGATTTAGCGGCGCCGCCCTCAACCAGCGAGACCTGTGTTACAACTTCAGGAAACGCATATACAACGAGGACAACATCAACAATGACTTTGCCGAACAAGGAAGAGCTAAATGTCCGAAGACCCCTGGCTCCGGTGACGCCATTTTGGCTCCCATCGACGCTGAAACTCCGACTGTGTTCGACAACAGCTACTACAAGAACCTTGTCCAGAAGAAGGGGCCACTCCATTCCGATCAGCAGTTGTTCAGCGGAGGGCAAACAGATTCACTAGTGAAAACTTACAGTGAAAGCCAGGAAAGCTTCTTCATGGACTTTGTGATTGCTATGCTCAAGATGGGGAGCATAAACCCGCTGATTGGTCCTCCATTTGGCGAGGTCAGGGTGATTTGCAGGAGAATCAATCCATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

303

Amino Acids

33.14

Weight (kDa)

8.29

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 34 - 262 2.9e-61 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 509
AccII CGCG 1 cut(s) 425
AciI CCGC 6 cut(s) 120, 303, 507, 513, 747, 848
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 510, 636
AfeI AGCGCT 1 cut(s) 46
AfiI CCNNNNNNNGG 5 cut(s) 143, 629, 712, 854, 866
AgsI TTSAA 1 cut(s) 471
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 3 cut(s) 210, 622, 789
AluBI AGCT 7 cut(s) 62, 88, 476, 490, 605, 687, 798
AluI AGCT 7 cut(s) 62, 88, 476, 490, 605, 687, 798
Alw21I GWGCWC 2 cut(s) 38, 492
Alw26I GTCTC 3 cut(s) 337, 360, 522
Ama87I CYCGRG 1 cut(s) 322
Aor51HI AGCGCT 1 cut(s) 46
AoxI GGCC 3 cut(s) 3, 389, 716
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 47, 223, 512
AspS9I GGNCC 3 cut(s) 389, 716, 857
AsuC2I CCSGG 2 cut(s) 323, 324
AsuHPI GGTGA 2 cut(s) 644, 892
AsuII TTCGAA 1 cut(s) 279
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 146, 509
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 146, 623
Bbv12I GWGCWC 2 cut(s) 38, 492
BbvI GCAGC 1 cut(s) 371
BccI CCATC 3 cut(s) 449, 659, 826
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 3 cut(s) 212, 624, 791
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 3 cut(s) 337, 360, 522
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 3 cut(s) 48, 477, 767
BfoI RGCGCY 2 cut(s) 48, 513
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 3 cut(s) 360, 508, 513
BlsI GCNGC 3 cut(s) 361, 509, 514
Bme1390I CCNGG 5 cut(s) 212, 323, 324, 624, 791
Bme18I GGWCC 1 cut(s) 857
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 389, 716, 857
BmiI GGNNCC 5 cut(s) 148, 511, 628, 648, 717
BmrFI CCNGG 5 cut(s) 212, 323, 324, 624, 791
BmsI GCATC 2 cut(s) 187, 208
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 2 cut(s) 146, 623
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 517, 812
BpuMI CCSGG 2 cut(s) 323, 324
BsaHI GRCGYC 2 cut(s) 510, 636
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 18, 322, 622
BsaWI WCCGGW 1 cut(s) 629
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 629, 712, 854, 866
BseBI CCWGG 3 cut(s) 212, 624, 791
BseDI CCNNGG 3 cut(s) 18, 322, 622
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 5 cut(s) 143, 629, 712, 854, 866
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 3 cut(s) 5, 391, 718
BshNI GGYRCC 2 cut(s) 146, 509
BsiHKAI GWGCWC 2 cut(s) 38, 492
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 323, 630
BslI CCNNNNNNNGG 5 cut(s) 143, 629, 712, 854, 866
BsmAI GTCTC 3 cut(s) 337, 360, 522
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 3 cut(s) 5, 391, 718
Bso31I GGTCTC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 38, 323, 492
Bsp143I GATC 2 cut(s) 289, 730
BspACI CCGC 6 cut(s) 120, 303, 507, 513, 747, 848
BspANI GGCC 3 cut(s) 5, 391, 718
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 5 cut(s) 148, 511, 628, 648, 717
BspOI GCTAGC 1 cut(s) 480
BspQI GCTCTTC 2 cut(s) 95, 595
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 2 cut(s) 146, 509
BspTNI GGTCTC 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 18, 322, 622
BssMI GATC 2 cut(s) 289, 730
BssNI GRCGYC 2 cut(s) 510, 636
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 212, 624, 791
Bst4CI ACNGT 4 cut(s) 100, 373, 673, 782
Bst6I CTCTTC 2 cut(s) 95, 595
BstACI GRCGYC 2 cut(s) 510, 636
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 34, 478
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 2 cut(s) 48, 513
BstHHI GCGC 3 cut(s) 47, 223, 512
BstKTI GATC 2 cut(s) 292, 733
BstMAI GTCTC 3 cut(s) 337, 360, 522
BstMBI GATC 2 cut(s) 289, 730
BstMWI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 644, 795
BstNI CCWGG 3 cut(s) 212, 624, 791
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 5 cut(s) 210, 321, 322, 622, 789
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 2 cut(s) 146, 623
BsuRI GGCC 3 cut(s) 5, 391, 718
BtgZI GCGATG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 2 cut(s) 369, 787
Cac8I GCNNGC 2 cut(s) 34, 478
CciI TCATGA 1 cut(s) 12
CfoI GCGC 3 cut(s) 47, 223, 512
Cfr13I GGNCC 3 cut(s) 389, 716, 857
Cfr9I CCCGGG 1 cut(s) 322
CseI GACGC 4 cut(s) 189, 431, 644, 665
CviAII CATG 3 cut(s) 13, 270, 805
DinI GGCGCC 1 cut(s) 511
DpnI GATC 2 cut(s) 291, 732
DpnII GATC 2 cut(s) 289, 730
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 95, 595
EarI CTCTTC 2 cut(s) 95, 595
EciI GGCGGA 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 857
Eco47III AGCGCT 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 3 cut(s) 210, 622, 789
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 492
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 16, 273, 808
FatI CATG 3 cut(s) 12, 269, 804
FauI CCCGC 1 cut(s) 855
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 360, 508, 513
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 360, 508, 513
FspBI CTAG 3 cut(s) 48, 477, 767
GlaI GCGC 3 cut(s) 46, 222, 511
GluI GCNGC 3 cut(s) 360, 508, 513
HaeII RGCGCY 2 cut(s) 48, 513
HaeIII GGCC 3 cut(s) 5, 391, 718
HapII CCGG 2 cut(s) 323, 630
HgaI GACGC 4 cut(s) 189, 431, 644, 665
HhaI GCGC 3 cut(s) 47, 223, 512
Hin1I GRCGYC 2 cut(s) 510, 636
Hin1II CATG 3 cut(s) 16, 273, 808
Hin6I GCGC 3 cut(s) 45, 221, 510
HinP1I GCGC 3 cut(s) 45, 221, 510
HindIII AAGCTT 1 cut(s) 796
HinfI GANTC 5 cut(s) 133, 276, 330, 761, 894
HpaII CCGG 2 cut(s) 323, 630
HphI GGTGA 2 cut(s) 644, 892
Hpy188I TCNGA 4 cut(s) 255, 615, 669, 730
Hpy188III TCNNGA 6 cut(s) 13, 310, 496, 547, 706, 829
Hpy99I CGWCG 3 cut(s) 205, 311, 659
HpyAV CCTTC 1 cut(s) 706
HpyCH4III ACNGT 4 cut(s) 100, 373, 673, 782
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 269, 359, 888
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 644, 795
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 2 cut(s) 510, 636
Hsp92II CATG 3 cut(s) 16, 273, 808
HspAI GCGC 3 cut(s) 45, 221, 510
KasI GGCGCC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 730
LguI GCTCTTC 2 cut(s) 95, 595
LmnI GCTCC 4 cut(s) 213, 632, 652, 837
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 2 cut(s) 187, 208
MaeI CTAG 3 cut(s) 48, 477, 767
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 536, 632
MalI GATC 2 cut(s) 291, 732
MboI GATC 2 cut(s) 289, 730
MboII GAAGA 8 cut(s) 82, 146, 160, 426, 612, 628, 721, 793
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 3 cut(s) 38, 323, 492
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 407
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 9 cut(s) 82, 261, 380, 420, 527, 559, 743, 865, 870
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 747, 850
MspI CCGG 2 cut(s) 323, 630
MspR9I CCNGG 5 cut(s) 212, 323, 324, 624, 791
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 3 cut(s) 212, 624, 791
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 644, 795
NarI GGCGCC 1 cut(s) 510
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 2 cut(s) 289, 730
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 16, 273, 808
NlaIV GGNNCC 5 cut(s) 148, 511, 628, 648, 717
NmuCI GTSAC 1 cut(s) 632
NspI RCATGY 1 cut(s) 273
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 12
PciSI GCTCTTC 2 cut(s) 95, 595
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 133, 276, 761, 894
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 3 cut(s) 361, 509, 514
PleI GAGTC 1 cut(s) 338
PluTI GGCGCC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 3 cut(s) 210, 622, 789
PspGI CCWGG 3 cut(s) 210, 622, 789
PspN4I GGNNCC 5 cut(s) 148, 511, 628, 648, 717
PspPI GGNCC 3 cut(s) 389, 716, 857
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 2 cut(s) 95, 595
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 360, 508, 513
Sau3AI GATC 2 cut(s) 289, 730
Sau96I GGNCC 3 cut(s) 389, 716, 857
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 5 cut(s) 212, 323, 324, 624, 791
SduI GDGCHC 3 cut(s) 38, 323, 492
SfaNI GCATC 2 cut(s) 187, 208
SfoI GGCGCC 1 cut(s) 511
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 857
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 496, 827
SmoI CTYRAG 2 cut(s) 496, 827
SpeI ACTAGT 1 cut(s) 766
SrfI GCCCGGGC 1 cut(s) 324
Sse9I AATT 1 cut(s) 407
SsiI CCGC 6 cut(s) 120, 303, 507, 513, 747, 848
SspDI GGCGCC 1 cut(s) 509
SspMI CTAG 3 cut(s) 48, 477, 767
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 5 cut(s) 210, 321, 322, 622, 789
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 100, 373, 673, 782
TaiI ACGT 1 cut(s) 109
TaqI TCGA 5 cut(s) 56, 279, 309, 654, 678
TasI AATT 1 cut(s) 407
TauI GCSGC 2 cut(s) 510, 515
TfiI GAWTC 4 cut(s) 133, 276, 761, 894
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 376, 787
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 1 cut(s) 793
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 2 cut(s) 376, 787
VpaK11BI GGWCC 1 cut(s) 857
XceI RCATGY 1 cut(s) 273
XmaI CCCGGG 1 cut(s) 322
XspI CTAG 3 cut(s) 48, 477, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.