RLG00000026950

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007679
Physical Location & Seq
Reverse (-)
7190126 .. 7191230
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026950

Sequence Viewer

Length: 843 bp
ATGCGCGTGACTGTTCTTAGCACTTCTCTAATGATTGTTATTTTTGGTTGTCTTACGGATACTAATTCATGGCAATGCCAGGGATGCGATGCGTCGTTGCTCCTGGACGATGCGCCGAACTTTATAGGAGAGAAAAATGTGCCTCAGAACAAGAATTCTGCATGTGGATTCGAAGTCATTGATCAAATCAAGTCCGCCGTCGAGAGAGTGTGCCCGGGCAAAGTCTTATGCGCCAATATAGTTGCTATTGCAGCAAGAGACTCTGTTGGCATTCTTGGAGGGCCCAAATGGGAAGTCCAATTGGGAAGATTGGACGCGAGGGCTACAAACCCCATCATCGCCAACATCAGCATACCAACTTCAAAAGCTAGCCTAAACGAGCTCATCTTGAGATTTAGCGACGCCGCCCTCAACCAGCGAGACCTGGTTGCTCTATCAGGCGCTCACATACTCGGCCAAGCACAGTGTCATAACTTCAGGAAACGCATATACAACGAGGACAACACCAACAAGGACTTTGCCGAACAAGGAAGAGCTAAATGTCCGAAGACCCCTGGCTCGGGTGACGCCAACTTGGCTCCCATCGACTCTGAAACTCTAACTATGTTCGACAACAGCTACTACAAGAACCTTGTCCTGAAGAAGGGCCTACTCCATTCCGATCAGCAGTTGTTCAGCGGAGGGAAAACAGATTCACTAGTGAAAACTTACAGTGAAAGTCAAGAAAGCTTCTTCATGGACTTTGTGACTGCTATGCTCAAGATGGGGAGCATCAACCCCCTGATTGGTCCTCCATTTGGCGAGGTCAGGGTGATTTGCAGGAGAATCAATTCATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

281

Amino Acids

30.55

Weight (kDa)

7.5

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 23 - 239 8.4e-61 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 6, 317
AciI CCGC 3 cut(s) 195, 405, 678
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 460, 659
AcyI GRCGYC 2 cut(s) 402, 567
AfiI CCNNNNNNNGG 5 cut(s) 559, 560, 643, 785, 797
AgsI TTSAA 1 cut(s) 363
AhlI ACTAGT 1 cut(s) 697
AjnI CCWGG 4 cut(s) 78, 102, 423, 553
AluBI AGCT 5 cut(s) 368, 382, 536, 618, 729
AluI AGCT 5 cut(s) 368, 382, 536, 618, 729
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 2 cut(s) 252, 414
Ama87I CYCGRG 2 cut(s) 214, 559
AoxI GGCC 3 cut(s) 281, 454, 646
ApaI GGGCCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
Asp700I GAANNNNTTC 1 cut(s) 829
AspLEI GCGC 4 cut(s) 6, 115, 233, 443
AspS9I GGNCC 4 cut(s) 281, 282, 646, 788
AsuC2I CCSGG 2 cut(s) 215, 216
AsuHPI GGTGA 2 cut(s) 575, 823
AsuII TTCGAA 1 cut(s) 171
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 2 cut(s) 214, 559
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 2 cut(s) 215, 285
BanII GRGCYC 2 cut(s) 285, 384
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 263
BccI CCATC 3 cut(s) 341, 590, 757
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 4 cut(s) 80, 104, 425, 555
BciVI GTATCC 1 cut(s) 52
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 2 cut(s) 215, 216
BcoDI GTCTC 2 cut(s) 252, 414
BcuI ACTAGT 1 cut(s) 697
BfaI CTAG 2 cut(s) 369, 698
BfoI RGCGCY 1 cut(s) 444
BfuI GTATCC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 575
BisI GCNGC 2 cut(s) 252, 405
BlsI GCNGC 2 cut(s) 253, 406
Bme1390I CCNGG 6 cut(s) 80, 104, 215, 216, 425, 555
Bme18I GGWCC 1 cut(s) 788
BmeT110I CYCGRG 2 cut(s) 214, 559
BmgT120I GGNCC 4 cut(s) 281, 282, 646, 788
BmiI GGNNCC 2 cut(s) 283, 579
BmrFI CCNGG 6 cut(s) 80, 104, 215, 216, 425, 555
BmsI GCATC 4 cut(s) 74, 79, 100, 780
BmtI GCTAGC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 409, 743
BpuMI CCSGG 2 cut(s) 215, 216
BsaHI GRCGYC 2 cut(s) 402, 567
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 79, 214, 553
Bsc4I CCNNNNNNNGG 5 cut(s) 559, 560, 643, 785, 797
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 4 cut(s) 80, 104, 425, 555
BseDI CCNNGG 3 cut(s) 79, 214, 553
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 5 cut(s) 559, 560, 643, 785, 797
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 158
BseSI GKGCMC 2 cut(s) 215, 285
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 2 cut(s) 6, 317
BshFI GGCC 3 cut(s) 283, 456, 648
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 2 cut(s) 214, 559
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 5 cut(s) 559, 560, 643, 785, 797
BsmAI GTCTC 2 cut(s) 252, 414
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 3 cut(s) 283, 456, 648
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 214, 559
Bsp119I TTCGAA 1 cut(s) 171
Bsp120I GGGCCC 1 cut(s) 281
Bsp1286I GDGCHC 3 cut(s) 215, 285, 384
Bsp143I GATC 2 cut(s) 181, 661
BspACI CCGC 3 cut(s) 195, 405, 678
BspANI GGCC 3 cut(s) 283, 456, 648
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 2 cut(s) 6, 317
BspLI GGNNCC 2 cut(s) 283, 579
BspOI GCTAGC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 526
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 79, 214, 553
BssMI GATC 2 cut(s) 181, 661
BssNI GRCGYC 2 cut(s) 402, 567
Bst2UI CCWGG 4 cut(s) 80, 104, 425, 555
Bst4CI ACNGT 3 cut(s) 13, 465, 713
Bst6I CTCTTC 1 cut(s) 526
BstACI GRCGYC 2 cut(s) 402, 567
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 17, 144
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 2 cut(s) 6, 317
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 4 cut(s) 6, 115, 233, 443
BstKTI GATC 2 cut(s) 184, 664
BstMAI GTCTC 2 cut(s) 252, 414
BstMBI GATC 2 cut(s) 181, 661
BstMWI GCNNNNNNNGC 3 cut(s) 84, 251, 575
BstNI CCWGG 4 cut(s) 80, 104, 425, 555
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 6 cut(s) 78, 102, 213, 214, 423, 553
BstSLI GKGCMC 2 cut(s) 215, 285
BstUI CGCG 2 cut(s) 6, 317
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 554
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 283, 456, 648
BtgZI GCGATG 2 cut(s) 102, 322
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 470, 718
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 4 cut(s) 6, 115, 233, 443
Cfr13I GGNCC 4 cut(s) 281, 282, 646, 788
Cfr9I CCCGGG 1 cut(s) 214
CseI GACGC 4 cut(s) 81, 323, 410, 575
CsiI ACCWGGT 1 cut(s) 423
CviAII CATG 3 cut(s) 69, 162, 736
DdeI CTNAG 2 cut(s) 17, 144
DpnI GATC 2 cut(s) 183, 663
DpnII GATC 2 cut(s) 181, 661
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 285, 384
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 460, 659
Eco88I CYCGRG 2 cut(s) 214, 559
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO109I RGGNCCY 2 cut(s) 281, 646
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 78, 102, 423, 553
EcoT38I GRGCYC 2 cut(s) 285, 384
FaeI CATG 3 cut(s) 72, 165, 739
FatI CATG 3 cut(s) 68, 161, 735
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 252, 405
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 2 cut(s) 285, 384
Fsp4HI GCNGC 2 cut(s) 252, 405
FspBI CTAG 2 cut(s) 369, 698
GlaI GCGC 4 cut(s) 5, 114, 232, 442
GluI GCNGC 2 cut(s) 252, 405
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 3 cut(s) 283, 456, 648
HapII CCGG 1 cut(s) 215
HgaI GACGC 4 cut(s) 81, 323, 410, 575
HhaI GCGC 4 cut(s) 6, 115, 233, 443
Hin1I GRCGYC 2 cut(s) 402, 567
Hin1II CATG 3 cut(s) 72, 165, 739
Hin6I GCGC 4 cut(s) 4, 113, 231, 441
HinP1I GCGC 4 cut(s) 4, 113, 231, 441
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 5 cut(s) 168, 260, 587, 692, 825
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 575, 823
Hpy188I TCNGA 4 cut(s) 147, 546, 592, 661
Hpy188III TCNNGA 6 cut(s) 202, 388, 478, 637, 722, 760
Hpy99I CGWCG 3 cut(s) 97, 203, 404
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 3 cut(s) 13, 465, 713
HpyCH4V TGCA 3 cut(s) 161, 251, 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 251, 575
HpyF3I CTNAG 2 cut(s) 17, 144
Hsp92I GRCGYC 2 cut(s) 402, 567
Hsp92II CATG 3 cut(s) 72, 165, 739
HspAI GCGC 4 cut(s) 4, 113, 231, 441
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 661
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 3 cut(s) 105, 583, 768
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 4 cut(s) 74, 79, 100, 780
MabI ACCWGGT 1 cut(s) 423
MaeI CTAG 2 cut(s) 369, 698
MaeIII GTNAC 3 cut(s) 7, 563, 745
MalI GATC 2 cut(s) 183, 663
MboI GATC 2 cut(s) 181, 661
MboII GAAGA 5 cut(s) 318, 543, 559, 652, 724
MfeI CAATTG 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 215, 285, 384
MluCI AATT 4 cut(s) 64, 154, 299, 829
MlyI GAGTC 2 cut(s) 254, 581
MnlI CCTC 8 cut(s) 153, 272, 312, 419, 490, 674, 796, 801
MroXI GAANNNNTTC 1 cut(s) 829
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 678
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 6 cut(s) 80, 104, 215, 216, 425, 555
MunI CAATTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 4 cut(s) 80, 104, 425, 555
MvnI CGCG 2 cut(s) 6, 317
MwoI GCNNNNNNNGC 3 cut(s) 84, 251, 575
NciI CCSGG 2 cut(s) 215, 216
NdeII GATC 2 cut(s) 181, 661
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 3 cut(s) 72, 165, 739
NlaIV GGNNCC 2 cut(s) 283, 579
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 3 cut(s) 7, 563, 745
NspI RCATGY 1 cut(s) 165
NspV TTCGAA 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 526
PctI GAATGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 829
PfeI GAWTC 3 cut(s) 168, 692, 825
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 253, 406
PleI GAGTC 2 cut(s) 254, 581
PpsI GAGTC 2 cut(s) 254, 581
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 4 cut(s) 78, 102, 423, 553
PspGI CCWGG 4 cut(s) 78, 102, 423, 553
PspN4I GGNNCC 2 cut(s) 283, 579
PspOMI GGGCCC 1 cut(s) 281
PspPI GGNCC 4 cut(s) 281, 282, 646, 788
RseI CAYNNNNRTG 1 cut(s) 73
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 526
SatI GCNGC 2 cut(s) 252, 405
Sau3AI GATC 2 cut(s) 181, 661
Sau96I GGNCC 4 cut(s) 281, 282, 646, 788
SchI GAGTC 2 cut(s) 254, 581
ScrFI CCNGG 6 cut(s) 80, 104, 215, 216, 425, 555
SduI GDGCHC 3 cut(s) 215, 285, 384
SetI ASST 8 cut(s) 370, 384, 426, 538, 620, 633, 731, 807
SexAI ACCWGGT 1 cut(s) 423
SfaNI GCATC 4 cut(s) 74, 79, 100, 780
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 788
SmaI CCCGGG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 2 cut(s) 388, 758
SmoI CTYRAG 2 cut(s) 388, 758
SpeI ACTAGT 1 cut(s) 697
SrfI GCCCGGGC 1 cut(s) 216
Sse9I AATT 4 cut(s) 64, 154, 299, 829
SsiI CCGC 3 cut(s) 195, 405, 678
SspMI CTAG 2 cut(s) 369, 698
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 6 cut(s) 78, 102, 213, 214, 423, 553
TaaI ACNGT 3 cut(s) 13, 465, 713
TaqI TCGA 4 cut(s) 171, 201, 585, 609
TasI AATT 4 cut(s) 64, 154, 299, 829
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 3 cut(s) 168, 692, 825
TscAI CASTG 2 cut(s) 470, 718
TseFI GTSAC 3 cut(s) 7, 563, 745
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 3 cut(s) 7, 563, 745
TspDTI ATGAA 3 cut(s) 57, 724, 822
TspGWI ACGGA 1 cut(s) 71
TspMI CCCGGG 1 cut(s) 214
TspRI CASTG 2 cut(s) 470, 718
VpaK11BI GGWCC 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 165
XmaI CCCGGG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 829
XspI CTAG 2 cut(s) 369, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.