Rroxscaffold_4G00285530

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007679
Physical Location & Seq
Reverse (-)
6806957 .. 6808485
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285530.1

Sequence Viewer

Length: 885 bp
ATGGCTTCATCTTCCTTCATTGCCATTTTGACCTTTGCTTTCCCTCTGTTCCTGGGCGCCACTAGAGCTCAACTTTCAACGAACTTTTACTCCAACTCTTGCCCCAGGCTCTTCTCCACCGTGAAATCCACCGGGTGCGATGGCTCGGTGTTGCTGGATGACACAGCAAACTTTACGGGAGAGAAAAATGCAGTTCCTAATCAGAATTCGGTTCGAGGATTCAACGTGATCGATAACATCAAGTCTGCAGTCGAGAAGGCGTGCCCCGGCGTGGTCTCTTGTGCTGATATTTTAGCCATTACTGCCAGGGACTCTGTTGTTATCCTTGGAGGACCTAGTTGGAATGTTAAATTGGGAAGAAGAGATGCTAGAACTGCTAGCCAAGCTGCTGCTAATAACAGCATTCCCCCTCCAACGTCTAACCTAAACCAACTCATCTCCAGATTCAGTGCTCTTGGCCTTTCCACCAAGGACATGGTTGCTTTATCTGGGTCACATACAATTGGGCAAGCAAGGTGCACAACCTTCAGGGCTCGTATATACAATGAAACCAACTTGGAGAGTACTTTGGCTCAAACAAGGCAATCAAACTGCCCAAGGACCGCTGGCTCAGGGGATAACAACTTGGCTCCACTTGATCTTCAATCTCCAACAGCCTTCGACAACAACTACTACAAGAACCTTATCCAGAACAGAGGTCTCCTCCACTCCGATCAGCAGTTGTTCTTGAATGGTGGCTCCACCGATTCCATAGTGCGTGGCTACAGCAACAGCCAGAGCACATTCACTTCTGACTTTGCCGCCGCAATGATCAAGATGGGAGACATAAACCCGCTCACTGGATCCAATGGAGAGATTAGGAAGAACTGCAGGAAGCCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

294

Amino Acids

31.42

Weight (kDa)

9.15

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 257 1.4e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 835
AciI CCGC 4 cut(s) 603, 801, 804, 833
AclWI GGATC 2 cut(s) 837, 850
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 271, 839
AgsI TTSAA 4 cut(s) 78, 223, 644, 730
AjnI CCWGG 3 cut(s) 51, 104, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 68, 386
AluI AGCT 2 cut(s) 68, 386
Alw21I GWGCWC 4 cut(s) 70, 454, 521, 782
Alw26I GTCTC 3 cut(s) 280, 704, 816
Alw44I GTGCAC 1 cut(s) 517
AlwI GGATC 2 cut(s) 837, 850
AoxI GGCC 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 386, 389
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 332, 600
AsuC2I CCSGG 2 cut(s) 133, 267
AsuNHI GCTAGC 1 cut(s) 377
AvaII GGWCC 2 cut(s) 332, 600
BaeGI GKGCMC 2 cut(s) 266, 521
BamHI GGATCC 1 cut(s) 842
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 70, 535
Bbv12I GWGCWC 4 cut(s) 70, 454, 521, 782
BbvI GCAGC 2 cut(s) 373, 376
BccI CCATC 2 cut(s) 134, 811
BciT130I CCWGG 3 cut(s) 53, 106, 307
BclI TGATCA 1 cut(s) 810
BcnI CCSGG 2 cut(s) 133, 267
BcoDI GTCTC 3 cut(s) 280, 704, 816
BfaI CTAG 4 cut(s) 63, 336, 369, 378
BfmI CTRYAG 3 cut(s) 246, 763, 868
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 4 cut(s) 387, 390, 801, 804
BlsI GCNGC 4 cut(s) 388, 391, 802, 805
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 5 cut(s) 53, 106, 133, 267, 307
Bme18I GGWCC 2 cut(s) 332, 600
BmgT120I GGNCC 2 cut(s) 332, 600
BmiI GGNNCC 4 cut(s) 58, 630, 739, 844
BmrFI CCNGG 5 cut(s) 53, 106, 133, 267, 307
BmsI GCATC 1 cut(s) 355
BmtI GCTAGC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 687, 719
BpmI CTGGAG 1 cut(s) 424
Bpu10I CCTNAGC 1 cut(s) 610
BpuMI CCSGG 2 cut(s) 133, 267
Bsa29I ATCGAT 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 280, 704
BsaJI CCNNGG 7 cut(s) 52, 104, 265, 306, 325, 468, 596
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 839
Bse1I ACTGG 1 cut(s) 844
Bse3DI GCAATG 2 cut(s) 18, 813
BseBI CCWGG 3 cut(s) 53, 106, 307
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 7 cut(s) 52, 104, 265, 306, 325, 468, 596
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 271, 839
BseMI GCAATG 2 cut(s) 18, 813
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 844
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 2 cut(s) 266, 521
BseXI GCAGC 2 cut(s) 373, 376
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 4 cut(s) 70, 454, 521, 782
BsiSI CCGG 2 cut(s) 132, 267
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 271, 839
BsmAI GTCTC 3 cut(s) 280, 704, 816
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 2 cut(s) 280, 704
Bsp1286I GDGCHC 6 cut(s) 70, 266, 454, 521, 535, 782
Bsp143I GATC 5 cut(s) 228, 637, 712, 810, 842
BspACI CCGC 4 cut(s) 603, 801, 804, 833
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 623
BspDI ATCGAT 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 58, 630, 739, 844
BspMAI CTGCAG 2 cut(s) 250, 872
BspOI GCTAGC 1 cut(s) 381
BspPI GGATC 2 cut(s) 837, 850
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 280, 704
BsrBI CCGCTC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 18, 813
BsrI ACTGG 1 cut(s) 844
BssECI CCNNGG 7 cut(s) 52, 104, 265, 306, 325, 468, 596
BssMI GATC 5 cut(s) 228, 637, 712, 810, 842
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 3 cut(s) 325, 468, 596
Bst2UI CCWGG 3 cut(s) 53, 106, 307
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 116, 355
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 4 cut(s) 262, 379, 510, 607
BstDEI CTNAG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 5 cut(s) 231, 640, 715, 813, 845
BstMAI GTCTC 3 cut(s) 280, 704, 816
BstMBI GATC 5 cut(s) 228, 637, 712, 810, 842
BstMWI GCNNNNNNNGC 4 cut(s) 65, 302, 374, 383
BstNI CCWGG 3 cut(s) 53, 106, 307
BstSCI CCNGG 5 cut(s) 51, 104, 131, 265, 305
BstSFI CTRYAG 3 cut(s) 246, 763, 868
BstSLI GKGCMC 2 cut(s) 266, 521
BstV1I GCAGC 2 cut(s) 373, 376
BstX2I RGATCY 1 cut(s) 842
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 842
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 454, 837
Cac8I GCNNGC 4 cut(s) 262, 379, 510, 607
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 332, 600
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 564
CviAII CATG 1 cut(s) 475
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 1 cut(s) 610
DinI GGCGCC 1 cut(s) 58
DpnI GATC 5 cut(s) 230, 639, 714, 812, 844
DpnII GATC 5 cut(s) 228, 637, 712, 810, 842
DraIII CACNNNGTG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 116, 355
EarI CTCTTC 2 cut(s) 116, 355
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 325, 468, 596
Eco24I GRGCYC 2 cut(s) 70, 535
Eco31I GGTCTC 2 cut(s) 280, 704
Eco47I GGWCC 2 cut(s) 332, 600
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 51, 104, 305
EcoT14I CCWWGG 3 cut(s) 325, 468, 596
EcoT38I GRGCYC 2 cut(s) 70, 535
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 3 cut(s) 325, 468, 596
FaeI CATG 1 cut(s) 478
FaiI YATR 6 cut(s) 476, 498, 539, 541, 752, 827
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 474
FauI CCCGC 1 cut(s) 840
FbaI TGATCA 1 cut(s) 810
Fnu4HI GCNGC 4 cut(s) 387, 390, 801, 804
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 2 cut(s) 70, 535
Fsp4HI GCNGC 4 cut(s) 387, 390, 801, 804
FspBI CTAG 4 cut(s) 63, 336, 369, 378
GlaI GCGC 1 cut(s) 58
GluI GCNGC 4 cut(s) 387, 390, 801, 804
GsuI CTGGAG 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 132, 267
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 478
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 4 cut(s) 219, 311, 444, 746
HpaII CCGG 2 cut(s) 132, 267
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 3 cut(s) 204, 712, 793
Hpy188III TCNNGA 5 cut(s) 253, 441, 688, 727, 814
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 4 cut(s) 25, 250, 535, 667
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 225, 416
HpyCH4V TGCA 4 cut(s) 191, 248, 519, 870
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 302, 374, 383
HpyF3I CTNAG 1 cut(s) 610
HpySE526I ACGT 2 cut(s) 225, 416
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 478
HspAI GCGC 1 cut(s) 57
KasI GGCGCC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 5 cut(s) 228, 637, 712, 810, 842
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 634, 743
Lsp1109I GCAGC 2 cut(s) 373, 376
LweI GCATC 1 cut(s) 355
MaeI CTAG 4 cut(s) 63, 336, 369, 378
MaeII ACGT 2 cut(s) 225, 416
MaeIII GTNAC 1 cut(s) 492
MalI GATC 5 cut(s) 230, 639, 714, 812, 844
MbiI CCGCTC 1 cut(s) 835
MboI GATC 5 cut(s) 228, 637, 712, 810, 842
MboII GAAGA 6 cut(s) 3, 103, 369, 372, 632, 874
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 6 cut(s) 70, 266, 454, 521, 535, 782
MluCI AATT 4 cut(s) 205, 350, 501, 880
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 4 cut(s) 117, 320, 437, 674
MnlI CCTC 6 cut(s) 54, 209, 323, 420, 689, 713
MseI TTAA 2 cut(s) 348, 883
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 132, 267
MspR9I CCNGG 5 cut(s) 53, 106, 133, 267, 307
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 3 cut(s) 53, 106, 307
MwoI GCNNNNNNNGC 4 cut(s) 65, 302, 374, 383
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 2 cut(s) 133, 267
NdeII GATC 5 cut(s) 228, 637, 712, 810, 842
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 1 cut(s) 478
NlaIV GGNNCC 4 cut(s) 58, 630, 739, 844
NmuCI GTSAC 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 219, 444, 746
PkrI GCNGC 4 cut(s) 388, 391, 802, 805
PleI GAGTC 1 cut(s) 305
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 332
Psp6I CCWGG 3 cut(s) 51, 104, 305
PspGI CCWGG 3 cut(s) 51, 104, 305
PspN4I GGNNCC 4 cut(s) 58, 630, 739, 844
PspPI GGNCC 2 cut(s) 332, 600
PspPPI RGGWCCY 1 cut(s) 332
PstI CTGCAG 2 cut(s) 250, 872
PsuI RGATCY 1 cut(s) 842
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SacI GAGCTC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 348, 883
SatI GCNGC 4 cut(s) 387, 390, 801, 804
Sau3AI GATC 5 cut(s) 228, 637, 712, 810, 842
Sau96I GGNCC 2 cut(s) 332, 600
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 5 cut(s) 53, 106, 133, 267, 307
SduI GDGCHC 6 cut(s) 70, 266, 454, 521, 535, 782
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 3 cut(s) 246, 763, 868
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 2 cut(s) 332, 600
Sse9I AATT 4 cut(s) 205, 350, 501, 880
SsiI CCGC 4 cut(s) 603, 801, 804, 833
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 4 cut(s) 63, 336, 369, 378
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 5 cut(s) 51, 104, 131, 265, 305
StyI CCWWGG 3 cut(s) 325, 468, 596
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 228, 419
TaqI TCGA 4 cut(s) 214, 231, 252, 660
TasI AATT 4 cut(s) 205, 350, 501, 880
TatI WGTACW 1 cut(s) 563
TauI GCSGC 2 cut(s) 803, 806
TfiI GAWTC 3 cut(s) 219, 444, 746
Tru1I TTAA 2 cut(s) 348, 883
Tru9I TTAA 2 cut(s) 348, 883
TscAI CASTG 2 cut(s) 454, 844
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 2 cut(s) 386, 389
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 2 cut(s) 7, 561
TspRI CASTG 2 cut(s) 454, 844
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 332, 600
XapI RAATTY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 4 cut(s) 63, 336, 369, 378
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.