FvH4_7g25570

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007679
Physical Location & Seq
Forward (+)
19498949 .. 19500734
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25570.t1

Sequence Viewer

Length: 972 bp
ATGGCTGCTTCATCATTATCTTGCATTGCCATTTTGACCTTTGTTCACCTTCTGTTCATGGGCACCTCCACCGCTCAACTTTCATCAAACTTTTACTCCAAGTCTTGCCCTAGGCTCTTCTCCATCGTGAAATCCACCGTGCAACCCGCAATCCGAAATGAGCCCCGAATGGGCGCCTCCATCCTTCGCCTCCACTTCCACGACTGTTTTGTCAACGGGTGCGATGGCTCGGTGTTGCTAGATGATACAGCAAACTTCACTGGAGAGAAAAATGCAGTTCCTAATAAGAATTCGCTTCGGGGATTCAACGTGATCGATAACATCAAGTCTGCAGTTGAGAATGTGTGCCCCGGCGTGGTCTCGTGTGCTGATATATTAGCCATTACGGCCAGGGACTCTGTTGCTATCCTTGGAGGACCAAGTTGGAATGTTAAGTTGGGAAGAAGAGATGCCAGAACTGCCAGCCAAGCCGCTGCGAATAACAGCATTCCCCCTCCAACCTCTAACCTAAACCAGCTCATCTCCAGATTCAACGCTCTTGGCCTTTCCACCAAGGACATGGTTGCTTTATCTGGGTCGCATACGATAGGGCAAGCAAGGTGTACAAGCTTCAGGGCTCGTGTATACAATGAGACCAACAACTTGGACAGTTCCTTGGCTCAAACAAGGCAATCAAACTGCCCAAGAACCACCGGCTCAGGGGACAACAACTTGGCTCCACTTGATCTTCAATCTCCAACAGCCTTCGACAACAACTACTACAATAATCTTATCAAGAACAGAGGTCTCCTCCACTCCGATCAGCAGTTGTTCTTGAATGGTGGCTCCACCGATTCCATAGTGCGTGGCTACAGCAGCAGCCAGAGCACATTCACATCTGACTTTGCTGCCGCAATGATCAAGATGGGAAACATCAACCCGCTCACTGGATCCAATGGAGAGATTAGGAAGAACTGTAGGAAACCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

324

Amino Acids

34.66

Weight (kDa)

9.23

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 286 1.1e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 62, 173
AccBSI CCGCTC 2 cut(s) 74, 922
AccI GTMKAC 1 cut(s) 624
AciI CCGC 5 cut(s) 72, 147, 471, 891, 920
AclWI GGATC 2 cut(s) 924, 937
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 595
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 604
AfiI CCNNNNNNNGG 4 cut(s) 170, 355, 699, 926
AgsI TTSAA 4 cut(s) 307, 532, 731, 817
AjnI CCWGG 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 2 cut(s) 517, 609
AluI AGCT 2 cut(s) 517, 609
Alw21I GWGCWC 1 cut(s) 869
Alw26I GTCTC 3 cut(s) 364, 626, 791
AlwI GGATC 2 cut(s) 924, 937
AoxI GGCC 2 cut(s) 387, 541
ApeKI GCWGC 5 cut(s) 5, 473, 855, 858, 887
ApoI RAATTY 1 cut(s) 289
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 416
AvrII CCTAGG 1 cut(s) 110
BaeGI GKGCMC 2 cut(s) 65, 350
BamHI GGATCC 1 cut(s) 929
BanI GGYRCC 2 cut(s) 62, 173
BanII GRGCYC 2 cut(s) 165, 619
BauI CACGAG 2 cut(s) 361, 618
Bbv12I GWGCWC 1 cut(s) 869
BbvI GCAGC 4 cut(s) 460, 867, 870, 874
BccI CCATC 4 cut(s) 131, 188, 218, 898
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 391
BclI TGATCA 1 cut(s) 897
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 364, 626, 791
BfaI CTAG 2 cut(s) 111, 239
BfmI CTRYAG 3 cut(s) 330, 850, 955
BfoI RGCGCY 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 386
BisI GCNGC 7 cut(s) 6, 471, 474, 856, 859, 888, 891
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 7 cut(s) 7, 472, 475, 857, 860, 889, 892
Bme1390I CCNGG 2 cut(s) 351, 391
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 5 cut(s) 64, 175, 717, 826, 931
BmrFI CCNGG 2 cut(s) 351, 391
BmsI GCATC 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 774, 806
BpmI CTGGAG 2 cut(s) 282, 508
Bpu10I CCTNAGC 1 cut(s) 697
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 3 cut(s) 364, 626, 791
BsaJI CCNNGG 6 cut(s) 110, 349, 390, 409, 552, 654
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 355, 699, 926
Bse118I RCCGGY 1 cut(s) 692
Bse1I ACTGG 2 cut(s) 265, 931
Bse3DI GCAATG 2 cut(s) 24, 900
BseBI CCWGG 1 cut(s) 391
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 6 cut(s) 110, 349, 390, 409, 552, 654
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 4 cut(s) 170, 355, 699, 926
BseMI GCAATG 2 cut(s) 24, 900
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 265, 931
BseRI GAGGAG 1 cut(s) 779
BseSI GKGCMC 2 cut(s) 65, 350
BseXI GCAGC 4 cut(s) 460, 867, 870, 874
BshFI GGCC 2 cut(s) 389, 543
BshNI GGYRCC 2 cut(s) 62, 173
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 869
BsiSI CCGG 2 cut(s) 351, 693
BslFI GGGAC 2 cut(s) 407, 716
BslI CCNNNNNNNGG 4 cut(s) 170, 355, 699, 926
BsmAI GTCTC 3 cut(s) 364, 626, 791
BsmFI GGGAC 2 cut(s) 407, 716
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 389, 543
Bso31I GGTCTC 3 cut(s) 364, 626, 791
Bsp1286I GDGCHC 5 cut(s) 65, 165, 350, 619, 869
Bsp1407I TGTACA 1 cut(s) 602
Bsp143I GATC 5 cut(s) 312, 724, 799, 897, 929
BspACI CCGC 5 cut(s) 72, 147, 471, 891, 920
BspANI GGCC 2 cut(s) 389, 543
BspCNI CTCAG 1 cut(s) 710
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 5 cut(s) 64, 175, 717, 826, 931
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 924, 937
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 62, 173
BspTNI GGTCTC 3 cut(s) 364, 626, 791
BsrBI CCGCTC 2 cut(s) 74, 922
BsrDI GCAATG 2 cut(s) 24, 900
BsrFI RCCGGY 1 cut(s) 692
BsrGI TGTACA 1 cut(s) 602
BsrI ACTGG 2 cut(s) 265, 931
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 6 cut(s) 110, 349, 390, 409, 552, 654
BssMI GATC 5 cut(s) 312, 724, 799, 897, 929
BssNAI GTATAC 1 cut(s) 625
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 2 cut(s) 361, 618
BssT1I CCWWGG 4 cut(s) 110, 409, 552, 654
Bst1107I GTATAC 1 cut(s) 625
Bst2BI CACGAG 2 cut(s) 361, 618
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 4 cut(s) 139, 206, 650, 956
Bst6I CTCTTC 2 cut(s) 122, 439
BstACI GRCGYC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 463, 594
BstDEI CTNAG 1 cut(s) 697
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 5 cut(s) 315, 727, 802, 900, 932
BstMAI GTCTC 3 cut(s) 364, 626, 791
BstMBI GATC 5 cut(s) 312, 724, 799, 897, 929
BstMWI GCNNNNNNNGC 5 cut(s) 386, 458, 467, 855, 864
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 349, 389
BstSFI CTRYAG 3 cut(s) 330, 850, 955
BstSLI GKGCMC 2 cut(s) 65, 350
BstV1I GCAGC 4 cut(s) 460, 867, 870, 874
BstX2I RGATCY 1 cut(s) 929
BstXI CCANNNNNNTGG 2 cut(s) 559, 643
BstYI RGATCY 1 cut(s) 929
BstZ17I GTATAC 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 389, 543
BsuTUI ATCGAT 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 258, 924
Cac8I GCNNGC 2 cut(s) 463, 594
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 692
Cfr13I GGNCC 1 cut(s) 416
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 603
CviAII CATG 2 cut(s) 58, 559
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 1 cut(s) 697
DinI GGCGCC 1 cut(s) 175
DpnI GATC 5 cut(s) 314, 726, 801, 899, 931
DpnII GATC 5 cut(s) 312, 724, 799, 897, 929
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 122, 439
EarI CTCTTC 2 cut(s) 122, 439
Eco130I CCWWGG 4 cut(s) 110, 409, 552, 654
Eco24I GRGCYC 2 cut(s) 165, 619
Eco31I GGTCTC 3 cut(s) 364, 626, 791
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 4 cut(s) 110, 409, 552, 654
EcoT38I GRGCYC 2 cut(s) 165, 619
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
ErhI CCWWGG 4 cut(s) 110, 409, 552, 654
FaeI CATG 2 cut(s) 61, 562
FaiI YATR 6 cut(s) 59, 374, 560, 582, 625, 839
FaqI GGGAC 2 cut(s) 407, 716
FatI CATG 2 cut(s) 57, 558
FauI CCCGC 2 cut(s) 154, 927
FbaI TGATCA 1 cut(s) 897
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 7 cut(s) 6, 471, 474, 856, 859, 888, 891
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 165, 619
Fsp4HI GCNGC 7 cut(s) 6, 471, 474, 856, 859, 888, 891
FspBI CTAG 2 cut(s) 111, 239
GlaI GCGC 1 cut(s) 175
GluI GCNGC 7 cut(s) 6, 471, 474, 856, 859, 888, 891
GsuI CTGGAG 2 cut(s) 282, 508
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 389, 543
HapII CCGG 2 cut(s) 351, 693
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 61, 562
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 4 cut(s) 303, 395, 528, 833
HpaII CCGG 2 cut(s) 351, 693
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 4 cut(s) 46, 214, 603, 625
Hpy188I TCNGA 3 cut(s) 155, 799, 880
Hpy188III TCNNGA 5 cut(s) 127, 525, 775, 814, 901
Hpy8I GTNNAC 4 cut(s) 46, 214, 603, 625
HpyAV CCTTC 3 cut(s) 59, 194, 754
HpyCH4III ACNGT 4 cut(s) 139, 206, 650, 956
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 24, 142, 275, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 458, 467, 855, 864
HpyF3I CTNAG 1 cut(s) 697
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 61, 562
HspAI GCGC 1 cut(s) 174
KasI GGCGCC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 897
Kzo9I GATC 5 cut(s) 312, 724, 799, 897, 929
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 721, 830
Lsp1109I GCAGC 4 cut(s) 460, 867, 870, 874
LweI GCATC 1 cut(s) 439
MaeI CTAG 2 cut(s) 111, 239
MaeII ACGT 1 cut(s) 309
MalI GATC 5 cut(s) 314, 726, 801, 899, 931
MbiI CCGCTC 2 cut(s) 74, 922
MboI GATC 5 cut(s) 312, 724, 799, 897, 929
MboII GAAGA 5 cut(s) 109, 453, 456, 719, 961
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 5 cut(s) 65, 165, 350, 619, 869
MluCI AATT 1 cut(s) 289
Mly113I GGCGCC 1 cut(s) 174
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 3 cut(s) 404, 521, 761
MnlI CCTC 8 cut(s) 76, 187, 200, 407, 504, 511, 776, 800
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 351, 693
MspR9I CCNGG 2 cut(s) 351, 391
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 5 cut(s) 386, 458, 467, 855, 864
NarI GGCGCC 1 cut(s) 174
NciI CCSGG 1 cut(s) 351
NdeII GATC 5 cut(s) 312, 724, 799, 897, 929
NlaIII CATG 2 cut(s) 61, 562
NlaIV GGNNCC 5 cut(s) 64, 175, 717, 826, 931
PciSI GCTCTTC 1 cut(s) 122
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 303, 528, 833
PkrI GCNGC 7 cut(s) 7, 472, 475, 857, 860, 889, 892
PleI GAGTC 1 cut(s) 389
PluTI GGCGCC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 5 cut(s) 64, 175, 717, 826, 931
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 929
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 7 cut(s) 6, 471, 474, 856, 859, 888, 891
Sau3AI GATC 5 cut(s) 312, 724, 799, 897, 929
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 351, 391
SduI GDGCHC 5 cut(s) 65, 165, 350, 619, 869
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 3 cut(s) 330, 850, 955
SfoI GGCGCC 1 cut(s) 175
SinI GGWCC 1 cut(s) 416
Sse9I AATT 1 cut(s) 289
SsiI CCGC 5 cut(s) 72, 147, 471, 891, 920
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 2 cut(s) 111, 239
StyD4I CCNGG 2 cut(s) 349, 389
StyI CCWWGG 4 cut(s) 110, 409, 552, 654
TaaI ACNGT 4 cut(s) 139, 206, 650, 956
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 315, 747
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 602
TauI GCSGC 2 cut(s) 473, 893
TfiI GAWTC 3 cut(s) 303, 528, 833
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 265, 931
TseI GCWGC 5 cut(s) 5, 473, 855, 858, 887
TspDTI ATGAA 2 cut(s) 46, 72
TspRI CASTG 2 cut(s) 265, 931
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmaJI CCTAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 111, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.