Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001916.1

Orthogroup ID

OG0007679

Physical Location & Seq

Genomic Coordinates Reverse (-)

58265 .. 59661

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001916.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggcttcatcttccttcattgccattttgacctttgctttccttctgttcctgggcaccactagagctcaactttcaacgaacttttactccaactcttgccccaggctcttctccaccgtgaaatctaccgtgcaatctgcaataaaaaacgaggcccggatgggcgcctccctcctccgcctccacttccacgactgctttgtcaacggctgcgatggctcggtgttgctggatgacacagcaaactttaagggagagaaaaatgcagttcctaatcagaattcggttcgaggattcaacgtgatcgataacatcaagtctgcagtcgagaatgcgtgccccggcgtggtctcatgtgctgatattttagccattactgccagggactccgttgttatccttggaggacctagttggaatgttaaattgggaagaagagatgctagaactgctagccaagctgctgctaataacagcattccccctccaacgtctaacctaaaccaactcatctccagattcagtgctcttggcctttccaccaaggacatggttgctttatctgggtcacatacaattgggcaagcaaggtgcacaaccttcagggctcgtatatacaatgaaactaacttggagagtactttggctcaaacaaggcaatcaaactgcccaaggaccgctggctcaggggacaacaacttggctccacttgatcttcaatctccaacagcgttcgacaacaactactacaagaaccttatccagaacagaggtctcctccactccgatcagcagttgttcttgaatggtggctccaccgattccatagtgcgtggctacagcaacagccagagcacattcacttctgactttgcggccgcaatgatcaagatgggagacattaacccgctcacaggatccaatggagagattaggaagaactgcaggaagcccaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

320

Amino Acids

34.42

Weight (kDa)

9.19

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05340
fragaria_vesca	FvH4_7g25570 FvH4_7g25571
malus_domestica	MD01G1162700.v1.1 MD07G1230700.v1.1 MD07G1230900.v1.1
prunus_persica	Prupe.2G260800_v2.0.a1 Prupe.2G260900_v2.0.a1
pyrus_communis	pycom01g17760 pycom07g20830
rosa_chinensis	RchiOBHm_Chr1g0371621 RchiOBHm_Chr1g0371631
rosa_laevigata	RLG00000026950 RLG00000026951
rosa_multiflora	Rmu_sc0000809.1_g000001 Rmu_sc0001916.1_g000015 Rmu_sc0040538.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285530
rosa_rugosa	Rorug01G0365400
rosa_samantha	Rh1AG375500 Rh1CG352100 Rh1DG370000
rosa_wichuraiana	Rw1G033030 Rw1G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	56, 167
AccBSI	CCGCTC	1 cut(s)	913
AciI	CCGC	5 cut(s)	181, 681, 878, 882, 911
AclWI	GGATC	2 cut(s)	915, 928
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	349, 917
AgsI	TTSAA	4 cut(s)	78, 301, 722, 808
AjnI	CCWGG	3 cut(s)	51, 104, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	68, 464
AluI	AGCT	2 cut(s)	68, 464
Alw21I	GWGCWC	4 cut(s)	70, 532, 599, 860
Alw26I	GTCTC	3 cut(s)	358, 782, 894
Alw44I	GTGCAC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	915, 928
AoxI	GGCC	3 cut(s)	156, 535, 879
ApaLI	GTGCAC	1 cut(s)	595
ApeKI	GCWGC	3 cut(s)	213, 464, 467
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	157, 410, 678
AsuC2I	CCSGG	2 cut(s)	160, 345
AsuNHI	GCTAGC	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	410, 678
BaeGI	GKGCMC	3 cut(s)	59, 344, 599
BamHI	GGATCC	1 cut(s)	920
BanI	GGYRCC	2 cut(s)	56, 167
BanII	GRGCYC	2 cut(s)	70, 613
Bbv12I	GWGCWC	4 cut(s)	70, 532, 599, 860
BbvI	GCAGC	3 cut(s)	200, 451, 454
BccI	CCATC	3 cut(s)	157, 212, 889
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	3 cut(s)	53, 106, 385
BclI	TGATCA	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	160, 345
BcoDI	GTCTC	3 cut(s)	358, 782, 894
BfaI	CTAG	4 cut(s)	63, 414, 447, 456
BfmI	CTRYAG	3 cut(s)	324, 841, 946
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	5 cut(s)	214, 465, 468, 879, 882
BlsI	GCNGC	5 cut(s)	215, 466, 469, 880, 883
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	5 cut(s)	53, 106, 160, 345, 385
Bme18I	GGWCC	2 cut(s)	410, 678
BmgT120I	GGNCC	3 cut(s)	157, 410, 678
BmiI	GGNNCC	5 cut(s)	58, 169, 708, 817, 922
BmrFI	CCNGG	5 cut(s)	53, 106, 160, 345, 385
BmsI	GCATC	1 cut(s)	433
BmtI	GCTAGC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	688
BpuMI	CCSGG	2 cut(s)	160, 345
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	358, 782
BsaJI	CCNNGG	7 cut(s)	52, 104, 343, 384, 403, 546, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 917
Bse3DI	GCAATG	2 cut(s)	18, 891
BseBI	CCWGG	3 cut(s)	53, 106, 385
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	7 cut(s)	52, 104, 343, 384, 403, 546, 674
BseGI	GGATG	2 cut(s)	168, 241
BseLI	CCNNNNNNNGG	2 cut(s)	349, 917
BseMI	GCAATG	2 cut(s)	18, 891
BseMII	CTCAG	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	167, 770
BseSI	GKGCMC	3 cut(s)	59, 344, 599
BseX3I	CGGCCG	1 cut(s)	879
BseXI	GCAGC	3 cut(s)	200, 451, 454
Bsh1285I	CGRYCG	1 cut(s)	882
BshFI	GGCC	3 cut(s)	158, 537, 881
BshNI	GGYRCC	2 cut(s)	56, 167
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	882
BsiHKAI	GWGCWC	4 cut(s)	70, 532, 599, 860
BsiSI	CCGG	2 cut(s)	160, 345
BslFI	GGGAC	2 cut(s)	401, 707
BslI	CCNNNNNNNGG	2 cut(s)	349, 917
BsmAI	GTCTC	3 cut(s)	358, 782, 894
BsmFI	GGGAC	2 cut(s)	401, 707
BsmI	GAATGC	2 cut(s)	340, 480
BsnI	GGCC	3 cut(s)	158, 537, 881
Bso31I	GGTCTC	2 cut(s)	358, 782
Bsp1286I	GDGCHC	7 cut(s)	59, 70, 344, 532, 599, 613, 860
Bsp143I	GATC	5 cut(s)	306, 715, 790, 888, 920
BspACI	CCGC	5 cut(s)	181, 681, 878, 882, 911
BspANI	GGCC	3 cut(s)	158, 537, 881
BspCNI	CTCAG	1 cut(s)	701
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	5 cut(s)	58, 169, 708, 817, 922
BspMAI	CTGCAG	2 cut(s)	328, 950
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	915, 928
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	56, 167
BspTNI	GGTCTC	2 cut(s)	358, 782
BsrBI	CCGCTC	1 cut(s)	913
BsrDI	GCAATG	2 cut(s)	18, 891
BssECI	CCNNGG	7 cut(s)	52, 104, 343, 384, 403, 546, 674
BssMI	GATC	5 cut(s)	306, 715, 790, 888, 920
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	3 cut(s)	403, 546, 674
Bst2UI	CCWGG	3 cut(s)	53, 106, 385
Bst4CI	ACNGT	2 cut(s)	121, 133
Bst6I	CTCTTC	2 cut(s)	116, 433
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	340, 457, 588, 685
BstDEI	CTNAG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	168, 241
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	309, 718, 793, 891, 923
BstMAI	GTCTC	3 cut(s)	358, 782, 894
BstMBI	GATC	5 cut(s)	306, 715, 790, 888, 920
BstMCI	CGRYCG	1 cut(s)	882
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 380, 452, 461
BstNI	CCWGG	3 cut(s)	53, 106, 385
BstSCI	CCNGG	5 cut(s)	51, 104, 158, 343, 383
BstSFI	CTRYAG	3 cut(s)	324, 841, 946
BstSLI	GKGCMC	3 cut(s)	59, 344, 599
BstV1I	GCAGC	3 cut(s)	200, 451, 454
BstX2I	RGATCY	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	920
BstZI	CGGCCG	1 cut(s)	879
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	158, 537, 881
BsuTUI	ATCGAT	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	168, 241
BtsIMutI	CAGTG	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	340, 457, 588, 685
CciNI	GCGGCCGC	1 cut(s)	879
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	157, 410, 678
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	642
CviAII	CATG	2 cut(s)	357, 553
CviQI	GTAC	1 cut(s)	642
DdeI	CTNAG	1 cut(s)	688
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	5 cut(s)	308, 717, 792, 890, 922
DpnII	GATC	5 cut(s)	306, 715, 790, 888, 920
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	879
EagI	CGGCCG	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	116, 433
EarI	CTCTTC	2 cut(s)	116, 433
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	879
Eco130I	CCWWGG	3 cut(s)	403, 546, 674
Eco24I	GRGCYC	2 cut(s)	70, 613
Eco31I	GGTCTC	2 cut(s)	358, 782
Eco47I	GGWCC	2 cut(s)	410, 678
Eco52I	CGGCCG	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	51, 104, 383
EcoT14I	CCWWGG	3 cut(s)	403, 546, 674
EcoT38I	GRGCYC	2 cut(s)	70, 613
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	3 cut(s)	403, 546, 674
FaeI	CATG	2 cut(s)	360, 556
FaiI	YATR	6 cut(s)	358, 554, 576, 617, 619, 830
FaqI	GGGAC	2 cut(s)	401, 707
FatI	CATG	2 cut(s)	356, 552
FauI	CCCGC	1 cut(s)	918
FbaI	TGATCA	1 cut(s)	888
Fnu4HI	GCNGC	5 cut(s)	214, 465, 468, 879, 882
FokI	GGATG	2 cut(s)	175, 248
FriOI	GRGCYC	2 cut(s)	70, 613
Fsp4HI	GCNGC	5 cut(s)	214, 465, 468, 879, 882
FspBI	CTAG	4 cut(s)	63, 414, 447, 456
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	214, 465, 468, 879, 882
GsuI	CTGGAG	1 cut(s)	502
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	158, 537, 881
HapII	CCGG	2 cut(s)	160, 345
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	360, 556
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	4 cut(s)	297, 389, 522, 824
HpaII	CCGG	2 cut(s)	160, 345
Hpy166II	GTNNAC	2 cut(s)	208, 597
Hpy188I	TCNGA	3 cut(s)	282, 790, 871
Hpy188III	TCNNGA	5 cut(s)	331, 519, 766, 805, 892
Hpy8I	GTNNAC	2 cut(s)	208, 597
HpyAV	CCTTC	3 cut(s)	25, 53, 613
HpyCH4III	ACNGT	2 cut(s)	121, 133
HpyCH4IV	ACGT	2 cut(s)	303, 494
HpyCH4V	TGCA	6 cut(s)	136, 143, 269, 326, 597, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 380, 452, 461
HpyF3I	CTNAG	1 cut(s)	688
HpySE526I	ACGT	2 cut(s)	303, 494
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	360, 556
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	888
Kzo9I	GATC	5 cut(s)	306, 715, 790, 888, 920
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	712, 821
Lsp1109I	GCAGC	3 cut(s)	200, 451, 454
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	4 cut(s)	63, 414, 447, 456
MaeII	ACGT	2 cut(s)	303, 494
MaeIII	GTNAC	1 cut(s)	570
MalI	GATC	5 cut(s)	308, 717, 792, 890, 922
MbiI	CCGCTC	1 cut(s)	913
MboI	GATC	5 cut(s)	306, 715, 790, 888, 920
MboII	GAAGA	6 cut(s)	3, 103, 447, 450, 710, 952
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	7 cut(s)	59, 70, 344, 532, 599, 613, 860
MluCI	AATT	4 cut(s)	283, 428, 579, 958
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	4 cut(s)	117, 398, 515, 752
MseI	TTAA	4 cut(s)	252, 426, 906, 961
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	160, 345
MspR9I	CCNGG	5 cut(s)	53, 106, 160, 345, 385
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	340, 480
MvaI	CCWGG	3 cut(s)	53, 106, 385
MwoI	GCNNNNNNNGC	4 cut(s)	219, 380, 452, 461
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	2 cut(s)	160, 345
NdeII	GATC	5 cut(s)	306, 715, 790, 888, 920
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	360, 556
NlaIV	GGNNCC	5 cut(s)	58, 169, 708, 817, 922
NmuCI	GTSAC	1 cut(s)	570
NotI	GCGGCCGC	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	2 cut(s)	340, 480
PfeI	GAWTC	3 cut(s)	297, 522, 824
PkrI	GCNGC	5 cut(s)	215, 466, 469, 880, 883
PleI	GAGTC	1 cut(s)	383
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	3 cut(s)	51, 104, 383
PspGI	CCWGG	3 cut(s)	51, 104, 383
PspN4I	GGNNCC	5 cut(s)	58, 169, 708, 817, 922
PspPI	GGNCC	3 cut(s)	157, 410, 678
PspPPI	RGGWCCY	1 cut(s)	410
PstI	CTGCAG	2 cut(s)	328, 950
PsuI	RGATCY	1 cut(s)	920
RsaI	GTAC	1 cut(s)	643
RsaNI	GTAC	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	252, 426, 906, 961
SatI	GCNGC	5 cut(s)	214, 465, 468, 879, 882
Sau3AI	GATC	5 cut(s)	306, 715, 790, 888, 920
Sau96I	GGNCC	3 cut(s)	157, 410, 678
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	5 cut(s)	53, 106, 160, 345, 385
SduI	GDGCHC	7 cut(s)	59, 70, 344, 532, 599, 613, 860
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	3 cut(s)	324, 841, 946
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	410, 678
Sse9I	AATT	4 cut(s)	283, 428, 579, 958
SsiI	CCGC	5 cut(s)	181, 681, 878, 882, 911
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	4 cut(s)	63, 414, 447, 456
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	5 cut(s)	51, 104, 158, 343, 383
StyI	CCWWGG	3 cut(s)	403, 546, 674
TaaI	ACNGT	2 cut(s)	121, 133
TaiI	ACGT	2 cut(s)	306, 497
TaqI	TCGA	4 cut(s)	292, 309, 330, 738
TasI	AATT	4 cut(s)	283, 428, 579, 958
TatI	WGTACW	1 cut(s)	641
TauI	GCSGC	2 cut(s)	881, 884
TfiI	GAWTC	3 cut(s)	297, 522, 824
Tru1I	TTAA	4 cut(s)	252, 426, 906, 961
Tru9I	TTAA	4 cut(s)	252, 426, 906, 961
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	570
TseI	GCWGC	3 cut(s)	213, 464, 467
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	2 cut(s)	7, 639
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	532
VneI	GTGCAC	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	410, 678
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	4 cut(s)	63, 414, 447, 456
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.