FvH4_7g25571

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007679
Physical Location & Seq
Forward (+)
19501064 .. 19502674
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25571.t1

Sequence Viewer

Length: 975 bp
ATGGCCTCGTCTTGTCCCCTATTGGCCATTTTCATGACCCTGGCTCTGGTTGCGAGCATTGACAGCGCCGCCGGTGCTGGACTTACCTCAGAATTTTACGCCAGATCTTGTCCAAATCTCTTCTCCACCGTGAGACCGATAGTTCAATCTGCAATCGATAAGAATCCCCGAATGGGTGCCTGTCTTCTCCGCCTCTTCTTCCACGATTGTTTTGTTAATGGATGTGATGCATCGTTGCTCCTCGACGATGTGCCGCCCTTCTTTATAGGAGAGAAAAATGTGCATCCGAACAAAGTTTCTGCATGTGGATTCAAAATCATCGATCAAATCAAGAACGCCGTCGAGAGAGCATGCCCGGGACTCGTCTCATGTGCCGATCTAGTTGCTATTGCCGCAAGAGACTCTGTTGGCATTCTTGGAGGGCCAAAATGGGAGGTCCAATTGGGAAGAAAAGACGCAAAGACTACAAACCCTTTAGTCGCCAACATCAGCATTCCAACATCAAGCGCTAGCCTAAAGGAGCTCATCATAAGATTTGGCGGCGTCGCCCTCAGCACGCGAGACCTGGTTGCTTTGTCAGGAGCTCACACACTCGGCCAAGCACAGTGTCACAACTTCAGGAAACGCATTTACAACGAGAGCAACATCGACAAGGACTTTGCCGAACAAAGAAGAGCAGAATGTCCGAGAACCTCCGGTAACACCAACTTGGCTCCCATCGACGGCGAAACTCCATATGTGTTCGACAACAGCTACTACAAGAACCTTGTCAAGAACAAGGGGCTACTGCATTCCGATCAGCAGTTGTTCAGTGGAGGGCGAACAGATGCACTAGTGAAAACTTACAGTGTCAGCCAGGAAAGCTTCTTCATGGACTTTGTGAGTGCTATGCTCAAGATGGGAAGCATTAACCCGCTGATTGGTCCAGCTGGTGAGGTCAGGATACTTTGTAGGAGAATCAATCCATTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.13

Weight (kDa)

8.6

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 283 5.1e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 1 cut(s) 559
AciI CCGC 6 cut(s) 69, 190, 254, 393, 540, 914
AcoI YGGCCR 2 cut(s) 24, 595
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 543
AfeI AGCGCT 1 cut(s) 508
AfiI CCNNNNNNNGG 4 cut(s) 46, 173, 722, 920
AgsI TTSAA 2 cut(s) 146, 313
AhlI ACTAGT 1 cut(s) 832
AjnI CCWGG 3 cut(s) 39, 564, 855
AluBI AGCT 5 cut(s) 523, 584, 753, 864, 929
AluI AGCT 5 cut(s) 523, 584, 753, 864, 929
Alw21I GWGCWC 2 cut(s) 525, 586
Alw26I GTCTC 4 cut(s) 127, 370, 393, 555
Ama87I CYCGRG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 4 cut(s) 3, 24, 422, 595
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AspLEI GCGC 2 cut(s) 68, 509
AspS9I GGNCC 3 cut(s) 422, 436, 923
AsuC2I CCSGG 2 cut(s) 356, 357
AsuHPI GGTGA 1 cut(s) 944
AsuNHI GCTAGC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 2 cut(s) 436, 923
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 525, 586
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 525, 586
BbvCI CCTCAGC 1 cut(s) 551
BccI CCATC 2 cut(s) 725, 892
BceAI ACGGC 2 cut(s) 323, 739
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 3 cut(s) 41, 566, 857
BciVI GTATCC 1 cut(s) 936
BcnI CCSGG 2 cut(s) 356, 357
BcoDI GTCTC 4 cut(s) 127, 370, 393, 555
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 3 cut(s) 380, 510, 833
BfoI RGCGCY 2 cut(s) 69, 510
BfuI GTATCC 1 cut(s) 936
BglII AGATCT 1 cut(s) 104
BisI GCNGC 4 cut(s) 69, 254, 393, 541
BlsI GCNGC 4 cut(s) 70, 255, 394, 542
Bme1390I CCNGG 5 cut(s) 41, 356, 357, 566, 857
Bme18I GGWCC 2 cut(s) 436, 923
BmeT110I CYCGRG 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 422, 436, 923
BmiI GGNNCC 2 cut(s) 178, 714
BmrFI CCNGG 5 cut(s) 41, 356, 357, 566, 857
BmsI GCATC 4 cut(s) 217, 239, 292, 817
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 356, 357
Bsa29I ATCGAT 2 cut(s) 156, 321
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 2 cut(s) 127, 555
BsaJI CCNNGG 2 cut(s) 39, 355
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 173, 722, 920
Bse118I RCCGGY 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 3 cut(s) 41, 566, 857
BseCI ATCGAT 2 cut(s) 156, 321
BseDI CCNNGG 2 cut(s) 39, 355
BseGI GGATG 2 cut(s) 227, 283
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 4 cut(s) 46, 173, 722, 920
BseMII CTCAG 2 cut(s) 102, 565
BseRI GAGGAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 559
BshFI GGCC 4 cut(s) 5, 26, 424, 597
BshNI GGYRCC 1 cut(s) 176
BshVI ATCGAT 2 cut(s) 156, 321
BsiHKAI GWGCWC 2 cut(s) 525, 586
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 72, 356, 696
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 4 cut(s) 46, 173, 722, 920
BsmAI GTCTC 4 cut(s) 127, 370, 393, 555
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 3 cut(s) 411, 492, 790
BsnI GGCC 4 cut(s) 5, 26, 424, 597
Bso31I GGTCTC 2 cut(s) 127, 555
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 525, 586
Bsp143I GATC 4 cut(s) 104, 322, 376, 796
BspACI CCGC 6 cut(s) 69, 190, 254, 393, 540, 914
BspANI GGCC 4 cut(s) 5, 26, 424, 597
BspCNI CTCAG 2 cut(s) 101, 564
BspDI ATCGAT 2 cut(s) 156, 321
BspFNI CGCG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 178, 714
BspOI GCTAGC 1 cut(s) 513
BspQI GCTCTTC 1 cut(s) 667
BspT107I GGYRCC 1 cut(s) 176
BspTNI GGTCTC 2 cut(s) 127, 555
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 39, 355
BssMI GATC 4 cut(s) 104, 322, 376, 796
BssNI GRCGYC 1 cut(s) 543
Bst2UI CCWGG 3 cut(s) 41, 566, 857
Bst4CI ACNGT 3 cut(s) 130, 606, 848
Bst6I CTCTTC 3 cut(s) 125, 200, 667
BstACI GRCGYC 1 cut(s) 543
BstC8I GCNNGC 4 cut(s) 55, 352, 511, 557
BstDEI CTNAG 2 cut(s) 88, 551
BstF5I GGATG 2 cut(s) 227, 283
BstFNI CGCG 1 cut(s) 559
BstH2I RGCGCY 2 cut(s) 69, 510
BstHHI GCGC 2 cut(s) 68, 509
BstKTI GATC 4 cut(s) 107, 325, 379, 799
BstMAI GTCTC 4 cut(s) 127, 370, 393, 555
BstMBI GATC 4 cut(s) 104, 322, 376, 796
BstMWI GCNNNNNNNGC 5 cut(s) 50, 63, 74, 392, 861
BstNI CCWGG 3 cut(s) 41, 566, 857
BstNSI RCATGY 2 cut(s) 306, 354
BstSCI CCNGG 5 cut(s) 39, 354, 355, 564, 855
BstUI CGCG 1 cut(s) 559
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
Bsu15I ATCGAT 2 cut(s) 156, 321
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 4 cut(s) 5, 26, 424, 597
BsuTUI ATCGAT 2 cut(s) 156, 321
BtsCI GGATG 2 cut(s) 227, 283
BtsIMutI CAGTG 3 cut(s) 611, 817, 853
Cac8I GCNNGC 4 cut(s) 55, 352, 511, 557
CciI TCATGA 1 cut(s) 33
CfoI GCGC 2 cut(s) 68, 509
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 422, 436, 923
Cfr9I CCCGGG 1 cut(s) 355
ClaI ATCGAT 2 cut(s) 156, 321
CseI GACGC 2 cut(s) 464, 532
CsiI ACCWGGT 1 cut(s) 564
CviAII CATG 5 cut(s) 34, 303, 351, 369, 871
DdeI CTNAG 2 cut(s) 88, 551
DpnI GATC 4 cut(s) 106, 324, 378, 798
DpnII GATC 4 cut(s) 104, 322, 376, 796
EaeI YGGCCR 2 cut(s) 24, 595
Eam1104I CTCTTC 3 cut(s) 125, 200, 667
EarI CTCTTC 3 cut(s) 125, 200, 667
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 523, 584
Eco24I GRGCYC 2 cut(s) 525, 586
Eco31I GGTCTC 2 cut(s) 127, 555
Eco47I GGWCC 2 cut(s) 436, 923
Eco47III AGCGCT 1 cut(s) 508
Eco53kI GAGCTC 2 cut(s) 523, 584
Eco57I CTGAAG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 355
EcoICRI GAGCTC 2 cut(s) 523, 584
EcoRII CCWGG 3 cut(s) 39, 564, 855
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 525, 586
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 5 cut(s) 37, 306, 354, 372, 874
FaqI GGGAC 1 cut(s) 372
FatI CATG 5 cut(s) 33, 302, 350, 368, 870
FauI CCCGC 1 cut(s) 921
FauNDI CATATG 1 cut(s) 736
Fnu4HI GCNGC 4 cut(s) 69, 254, 393, 541
FokI GGATG 2 cut(s) 234, 270
FriOI GRGCYC 2 cut(s) 525, 586
Fsp4HI GCNGC 4 cut(s) 69, 254, 393, 541
FspBI CTAG 3 cut(s) 380, 510, 833
GlaI GCGC 2 cut(s) 67, 508
GluI GCNGC 4 cut(s) 69, 254, 393, 541
HaeII RGCGCY 2 cut(s) 69, 510
HaeIII GGCC 4 cut(s) 5, 26, 424, 597
HapII CCGG 3 cut(s) 72, 356, 696
HgaI GACGC 2 cut(s) 464, 532
HhaI GCGC 2 cut(s) 68, 509
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 5 cut(s) 37, 306, 354, 372, 874
Hin6I GCGC 2 cut(s) 66, 507
HinP1I GCGC 2 cut(s) 66, 507
HindIII AAGCTT 1 cut(s) 862
HinfI GANTC 5 cut(s) 163, 309, 360, 401, 957
HpaII CCGG 3 cut(s) 72, 356, 696
HphI GGTGA 1 cut(s) 944
Hpy188I TCNGA 4 cut(s) 91, 288, 687, 796
Hpy188III TCNNGA 8 cut(s) 34, 331, 343, 579, 619, 772, 895, 940
Hpy99I CGWCG 4 cut(s) 248, 344, 548, 725
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 3 cut(s) 130, 606, 848
HpyCH4V TGCA 6 cut(s) 152, 230, 283, 302, 790, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 63, 74, 392, 861
HpyF3I CTNAG 2 cut(s) 88, 551
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 5 cut(s) 37, 306, 354, 372, 874
HspAI GCGC 2 cut(s) 66, 507
Kzo9I GATC 4 cut(s) 104, 322, 376, 796
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 4 cut(s) 243, 520, 581, 718
LweI GCATC 4 cut(s) 217, 239, 292, 817
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 3 cut(s) 380, 510, 833
MaeIII GTNAC 2 cut(s) 608, 698
MalI GATC 4 cut(s) 106, 324, 378, 798
MboI GATC 4 cut(s) 104, 322, 376, 796
MboII GAAGA 7 cut(s) 112, 176, 187, 190, 459, 684, 859
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 525, 586
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 92, 440
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 2 cut(s) 354, 395
MmeI TCCRAC 1 cut(s) 521
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 216, 909
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 2 cut(s) 916, 929
MspI CCGG 3 cut(s) 72, 356, 696
MspR9I CCNGG 5 cut(s) 41, 356, 357, 566, 857
MunI CAATTG 1 cut(s) 440
Mva1269I GAATGC 3 cut(s) 411, 492, 790
MvaI CCWGG 3 cut(s) 41, 566, 857
MvnI CGCG 1 cut(s) 559
MwoI GCNNNNNNNGC 5 cut(s) 50, 63, 74, 392, 861
NciI CCSGG 2 cut(s) 356, 357
NdeI CATATG 1 cut(s) 736
NdeII GATC 4 cut(s) 104, 322, 376, 796
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 5 cut(s) 37, 306, 354, 372, 874
NlaIV GGNNCC 2 cut(s) 178, 714
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 608
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 2 cut(s) 306, 354
PaeI GCATGC 1 cut(s) 354
PagI TCATGA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 667
PctI GAATGC 3 cut(s) 411, 492, 790
PfeI GAWTC 3 cut(s) 163, 309, 957
PkrI GCNGC 4 cut(s) 70, 255, 394, 542
PleI GAGTC 2 cut(s) 354, 395
PpsI GAGTC 2 cut(s) 354, 395
Psp124BI GAGCTC 2 cut(s) 525, 586
Psp6I CCWGG 3 cut(s) 39, 564, 855
PspGI CCWGG 3 cut(s) 39, 564, 855
PspN4I GGNNCC 2 cut(s) 178, 714
PspPI GGNCC 3 cut(s) 422, 436, 923
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 929
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 2 cut(s) 525, 586
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 216, 909
SatI GCNGC 4 cut(s) 69, 254, 393, 541
Sau3AI GATC 4 cut(s) 104, 322, 376, 796
Sau96I GGNCC 3 cut(s) 422, 436, 923
SchI GAGTC 2 cut(s) 354, 395
ScrFI CCNGG 5 cut(s) 41, 356, 357, 566, 857
SduI GDGCHC 2 cut(s) 525, 586
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 4 cut(s) 217, 239, 292, 817
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 436, 923
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SpeI ACTAGT 1 cut(s) 832
SphI GCATGC 1 cut(s) 354
Sse9I AATT 2 cut(s) 92, 440
SsiI CCGC 6 cut(s) 69, 190, 254, 393, 540, 914
SspMI CTAG 3 cut(s) 380, 510, 833
SstI GAGCTC 2 cut(s) 525, 586
StyD4I CCNGG 5 cut(s) 39, 354, 355, 564, 855
TaaI ACNGT 3 cut(s) 130, 606, 848
TaqI TCGA 7 cut(s) 156, 243, 321, 342, 648, 720, 744
TaqII GACCGA 1 cut(s) 151
TasI AATT 2 cut(s) 92, 440
TauI GCSGC 4 cut(s) 71, 256, 395, 543
TfiI GAWTC 3 cut(s) 163, 309, 957
Tru1I TTAA 2 cut(s) 216, 909
Tru9I TTAA 2 cut(s) 216, 909
TscAI CASTG 3 cut(s) 611, 817, 853
TseFI GTSAC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 22, 859
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 3 cut(s) 611, 817, 853
VpaK11BI GGWCC 2 cut(s) 436, 923
XapI RAATTY 1 cut(s) 92
XceI RCATGY 2 cut(s) 306, 354
XmaI CCCGGG 1 cut(s) 355
XspI CTAG 3 cut(s) 380, 510, 833
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.