RchiOBHm_Chr1g0371631

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007679
Physical Location & Seq
Forward (+)
60735090 .. 60736474
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59570

Sequence Viewer

Length: 951 bp
ATGGCCATTTTCATGACCTTGGCTCTGGTTGCGAGCACCGACAGCGCTGGACTTTCGACAGCTTTTTACTCCTCATCTTGTCCAAAGCTCTTCTCCACCGTGAAACCTATTGTCCAATCCGCAATCAATAAGAATCCCCGAATGGGTGCCTGTCTTCTCCGCCTATTCTTCCACGATTGTTTTGTTAATGGATGTGATGCATCGTTGCTCCTGGACGATGCGCCGAACTTTATAGGAGAGAAAAATGTGCCTCCGAACAAGAACTCTGCATGTGGATTCGAAGTCATTGATCAAATCAAGTCCGCCGTCGAGAGAGTGTGCCCGGGCAGAGTCTCTTGTGCCGATATAGTTGCTATTGCAGCAAGAGACACTGTTGGCATTCTTGGAGGGCCAAAATGGGAAGTCCAATTGGGAAGATTAGACGCGAGGGCTACAAACCCCATCATCGCCAACATCAGCATACCAACTTCAAAAGCTAGCCTAAACGAGCTCATCTTGAGATTTAGCGGCGCCGCCCTCAACCAGCGAGACCTGGTTGCTCTGTCAGGCGCTCACACACTAGGCCAAGCACAGTGTTACAACTTCAGGAAACGCATATACAACGAGGACAACATCAACAATGACTTTGCCGAACAAGGAAGAGCTAAATGTCCGAAGACCCCTGGCTCCGGTGACGCCATTTTGGCTTCCATCGACGCTGAAACTCCGACTGTGTTCGACAACAGCTACTACAAGAACCTTGTCCAGAAGAAGGGGCCACTCCATTCCGATCAGCAGTTGTTCAGCGGAGGGCAAACAGATTCACTAGTGAAAACTTACAGTGAAAGCCAGGAAAGCTTCTTCATGGACTTTGTGATTGCTATGCTCAAGATGGGGAGCATAAACCCGCTGATTGGTCCTCCATTTGGCGAGGTCAGGGTGATTTGCAGGAGAATCAATCCATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

316

Amino Acids

34.22

Weight (kDa)

8.0

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 35 - 275 4.2e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 509
AccII CGCG 1 cut(s) 425
AciI CCGC 7 cut(s) 120, 160, 303, 507, 513, 786, 887
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 568
AcyI GRCGYC 2 cut(s) 510, 675
AfeI AGCGCT 1 cut(s) 46
AfiI CCNNNNNNNGG 5 cut(s) 143, 668, 751, 893, 905
AgsI TTSAA 1 cut(s) 471
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 4 cut(s) 210, 531, 661, 828
AluBI AGCT 7 cut(s) 62, 88, 476, 490, 644, 726, 837
AluI AGCT 7 cut(s) 62, 88, 476, 490, 644, 726, 837
Alw21I GWGCWC 2 cut(s) 38, 492
Alw26I GTCTC 3 cut(s) 337, 360, 522
Ama87I CYCGRG 1 cut(s) 322
Aor51HI AGCGCT 1 cut(s) 46
AoxI GGCC 4 cut(s) 3, 389, 562, 755
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 4 cut(s) 47, 223, 512, 551
AspS9I GGNCC 3 cut(s) 389, 755, 896
AsuC2I CCSGG 2 cut(s) 323, 324
AsuHPI GGTGA 2 cut(s) 683, 931
AsuII TTCGAA 1 cut(s) 279
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 146, 509
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 146, 662
Bbv12I GWGCWC 2 cut(s) 38, 492
BbvI GCAGC 1 cut(s) 371
BccI CCATC 3 cut(s) 449, 698, 865
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 4 cut(s) 212, 533, 663, 830
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 3 cut(s) 337, 360, 522
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 3 cut(s) 477, 560, 806
BfoI RGCGCY 3 cut(s) 48, 513, 552
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 3 cut(s) 360, 508, 513
BlsI GCNGC 3 cut(s) 361, 509, 514
Bme1390I CCNGG 6 cut(s) 212, 323, 324, 533, 663, 830
Bme18I GGWCC 1 cut(s) 896
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 389, 755, 896
BmiI GGNNCC 4 cut(s) 148, 511, 667, 756
BmrFI CCNGG 6 cut(s) 212, 323, 324, 533, 663, 830
BmsI GCATC 3 cut(s) 187, 208, 209
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 2 cut(s) 146, 662
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 517, 851
BpuMI CCSGG 2 cut(s) 323, 324
BsaHI GRCGYC 2 cut(s) 510, 675
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 18, 322, 661
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 668, 751, 893, 905
BseBI CCWGG 4 cut(s) 212, 533, 663, 830
BseDI CCNNGG 3 cut(s) 18, 322, 661
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 5 cut(s) 143, 668, 751, 893, 905
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 4 cut(s) 5, 391, 564, 757
BshNI GGYRCC 2 cut(s) 146, 509
BsiHKAI GWGCWC 2 cut(s) 38, 492
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 323, 669
BslI CCNNNNNNNGG 5 cut(s) 143, 668, 751, 893, 905
BsmAI GTCTC 3 cut(s) 337, 360, 522
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 4 cut(s) 5, 391, 564, 757
Bso31I GGTCTC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 38, 323, 492
Bsp143I GATC 2 cut(s) 289, 769
BspACI CCGC 7 cut(s) 120, 160, 303, 507, 513, 786, 887
BspANI GGCC 4 cut(s) 5, 391, 564, 757
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 4 cut(s) 148, 511, 667, 756
BspOI GCTAGC 1 cut(s) 480
BspQI GCTCTTC 2 cut(s) 95, 634
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 2 cut(s) 146, 509
BspTNI GGTCTC 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 18, 322, 661
BssMI GATC 2 cut(s) 289, 769
BssNI GRCGYC 2 cut(s) 510, 675
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 4 cut(s) 212, 533, 663, 830
Bst4CI ACNGT 5 cut(s) 100, 373, 573, 712, 821
Bst6I CTCTTC 2 cut(s) 95, 634
BstACI GRCGYC 2 cut(s) 510, 675
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 34, 478
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 3 cut(s) 48, 513, 552
BstHHI GCGC 4 cut(s) 47, 223, 512, 551
BstKTI GATC 2 cut(s) 292, 772
BstMAI GTCTC 3 cut(s) 337, 360, 522
BstMBI GATC 2 cut(s) 289, 769
BstMWI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 683, 834
BstNI CCWGG 4 cut(s) 212, 533, 663, 830
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 6 cut(s) 210, 321, 322, 531, 661, 828
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 2 cut(s) 146, 662
BsuRI GGCC 4 cut(s) 5, 391, 564, 757
BtgZI GCGATG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 3 cut(s) 369, 578, 826
Cac8I GCNNGC 2 cut(s) 34, 478
CciI TCATGA 1 cut(s) 12
CfoI GCGC 4 cut(s) 47, 223, 512, 551
Cfr13I GGNCC 3 cut(s) 389, 755, 896
Cfr9I CCCGGG 1 cut(s) 322
CseI GACGC 3 cut(s) 431, 683, 704
CsiI ACCWGGT 1 cut(s) 531
CviAII CATG 3 cut(s) 13, 270, 844
DinI GGCGCC 1 cut(s) 511
DpnI GATC 2 cut(s) 291, 771
DpnII GATC 2 cut(s) 289, 769
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 95, 634
EarI CTCTTC 2 cut(s) 95, 634
EciI GGCGGA 2 cut(s) 149, 292
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 896
Eco47III AGCGCT 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 568
Eco88I CYCGRG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 4 cut(s) 210, 531, 661, 828
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 492
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 16, 273, 847
FatI CATG 3 cut(s) 12, 269, 843
FauI CCCGC 1 cut(s) 894
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 360, 508, 513
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 360, 508, 513
FspBI CTAG 3 cut(s) 477, 560, 806
GlaI GCGC 4 cut(s) 46, 222, 511, 550
GluI GCNGC 3 cut(s) 360, 508, 513
HaeII RGCGCY 3 cut(s) 48, 513, 552
HaeIII GGCC 4 cut(s) 5, 391, 564, 757
HapII CCGG 2 cut(s) 323, 669
HgaI GACGC 3 cut(s) 431, 683, 704
HhaI GCGC 4 cut(s) 47, 223, 512, 551
Hin1I GRCGYC 2 cut(s) 510, 675
Hin1II CATG 3 cut(s) 16, 273, 847
Hin6I GCGC 4 cut(s) 45, 221, 510, 549
HinP1I GCGC 4 cut(s) 45, 221, 510, 549
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 5 cut(s) 133, 276, 330, 800, 933
HpaII CCGG 2 cut(s) 323, 669
HphI GGTGA 2 cut(s) 683, 931
Hpy188I TCNGA 4 cut(s) 255, 654, 708, 769
Hpy188III TCNNGA 6 cut(s) 13, 310, 496, 586, 745, 868
Hpy99I CGWCG 2 cut(s) 311, 698
HpyAV CCTTC 1 cut(s) 745
HpyCH4III ACNGT 5 cut(s) 100, 373, 573, 712, 821
HpyCH4V TGCA 4 cut(s) 200, 269, 359, 927
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 683, 834
Hsp92I GRCGYC 2 cut(s) 510, 675
Hsp92II CATG 3 cut(s) 16, 273, 847
HspAI GCGC 4 cut(s) 45, 221, 510, 549
KasI GGCGCC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 769
LguI GCTCTTC 2 cut(s) 95, 634
LmnI GCTCC 3 cut(s) 213, 671, 876
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 3 cut(s) 187, 208, 209
MabI ACCWGGT 1 cut(s) 531
MaeI CTAG 3 cut(s) 477, 560, 806
MaeIII GTNAC 2 cut(s) 575, 671
MalI GATC 2 cut(s) 291, 771
MboI GATC 2 cut(s) 289, 769
MboII GAAGA 8 cut(s) 82, 146, 160, 426, 651, 667, 760, 832
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 3 cut(s) 38, 323, 492
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 407
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 731
MnlI CCTC 9 cut(s) 82, 261, 380, 420, 527, 598, 782, 904, 909
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 202
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 786, 889
MspI CCGG 2 cut(s) 323, 669
MspR9I CCNGG 6 cut(s) 212, 323, 324, 533, 663, 830
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 4 cut(s) 212, 533, 663, 830
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 5 cut(s) 29, 42, 359, 683, 834
NarI GGCGCC 1 cut(s) 510
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 2 cut(s) 289, 769
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 16, 273, 847
NlaIV GGNNCC 4 cut(s) 148, 511, 667, 756
NmuCI GTSAC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 1 cut(s) 273
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 12
PciSI GCTCTTC 2 cut(s) 95, 634
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 133, 276, 800, 933
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 3 cut(s) 361, 509, 514
PleI GAGTC 1 cut(s) 338
PluTI GGCGCC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 4 cut(s) 210, 531, 661, 828
PspGI CCWGG 4 cut(s) 210, 531, 661, 828
PspN4I GGNNCC 4 cut(s) 148, 511, 667, 756
PspPI GGNCC 3 cut(s) 389, 755, 896
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 2 cut(s) 95, 634
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 360, 508, 513
Sau3AI GATC 2 cut(s) 289, 769
Sau96I GGNCC 3 cut(s) 389, 755, 896
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 6 cut(s) 212, 323, 324, 533, 663, 830
SduI GDGCHC 3 cut(s) 38, 323, 492
SexAI ACCWGGT 1 cut(s) 531
SfaNI GCATC 3 cut(s) 187, 208, 209
SfoI GGCGCC 1 cut(s) 511
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 896
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 496, 866
SmoI CTYRAG 2 cut(s) 496, 866
SpeI ACTAGT 1 cut(s) 805
SrfI GCCCGGGC 1 cut(s) 324
Sse9I AATT 1 cut(s) 407
SsiI CCGC 7 cut(s) 120, 160, 303, 507, 513, 786, 887
SspDI GGCGCC 1 cut(s) 509
SspMI CTAG 3 cut(s) 477, 560, 806
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 6 cut(s) 210, 321, 322, 531, 661, 828
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 5 cut(s) 100, 373, 573, 712, 821
TaqI TCGA 5 cut(s) 56, 279, 309, 693, 717
TasI AATT 1 cut(s) 407
TauI GCSGC 2 cut(s) 510, 515
TfiI GAWTC 4 cut(s) 133, 276, 800, 933
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 3 cut(s) 376, 578, 826
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 1 cut(s) 832
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 3 cut(s) 376, 578, 826
VpaK11BI GGWCC 1 cut(s) 896
XceI RCATGY 1 cut(s) 273
XmaI CCCGGG 1 cut(s) 322
XspI CTAG 3 cut(s) 477, 560, 806
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.