Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

1716871 .. 1719541

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGTCTTGGATAATCGTTAAGAATCTTCCTTCCAAACATGTGACAGAGGAACGACTTCGAGATGTCTTTTCACGAAAAGGAGAAATCGCAGACGTGAAATTGAAGCGTAAAAGTGATGGCAAAAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAACAAGAAGCTCAAGATGCTATCACATATGTTAACAAGTGTTTCATTGATACTTATCGAATATCTGTTGAGGTTGCGGACCCTCCTCCGAGGGAAGAAGGGAAGGAAAATACTGAACATTTTTCTAATGCTTATGCTAAAGGAGACAAAAAGATTAAGAAGAAACCAGAGGTCTCGCCCGATGGTGCTGATGAGCCTAACAAAGCGAAAATATCATTATTAGATTCTAAAAAGACTAGAAAGATTAAAGTTGTTGCTCTCGTTGGTGATGATGTTTCTGATATGGAATACTACAAGAGTCGGACAAAGAAAAATCTGTCGGATTCGGACAGTGATTGTGAAACTTATGGTTGTGAAGATGCAATTCATGTTTTTCCTATTGATGGGGATATTGAAGCTGACAGAGTTGACAAAGAGTTTACAATTCATGTTTTCGGATTCGGACATCAGGATGTTGTTTTCCTTGAACCGATTGAGGCACGTGAAGCTCTGAAGGGAATGGGCGTACAAGCGTTACAAAGATGCTCCCCTGTATCTGGGGCTCCTAGAGATATTCTTGAGCCAAAAGCACTTGCCGATAACAATGAAAATACGAGTGATGTTGAAGAAAATGATGTGAGAAGAAGACTCAACTTGGATCAGCAGGTTGGAATCGATTCGGATATAACTGAGGTATGCCCACTTTATGATTGCTGTGGACGTTTTGAAACCATGTATTCTGAACTTCAAGACACTGATGAGAGTTTGAAGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTTTTAAGGGAACTGTTGTGGATGGGCATGCTTTGATCTTGAGCTTCTCTAAAAACAAGCCGAGTGGAACGGTTGGGAAAGATTTAGACAAGGACACAATTTTGACAAAGTTACATGTGAAAAATATAGCTTTTGAAGCAACTATGAAAGAAGTAAGACAGCTTTTCACTCCATTTGGACAGATCAAGAGCGTTGGGCTTCCAGAGAGGACTAAGGGAAGATATGCTGCCTGTTCATCTTTGACATCCTTGAATGCATCCTCAACTCGCTATTTGCCGTCTTTGCAGGTGATCGAGTGGAAAAAGGTTGACAATAGCATGAAGGCGATCCGATATCGTTCTGCTGCCAAGTATGTGGATCAAGAAAACAATAATCCAAAGAAAAGGAAAAGCTCGACAGTTGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

451

Amino Acids

50.7

Weight (kDa)

7.54

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 72	4.5e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1222
Acc36I	ACCTGC	2 cut(s)	790, 1222
AccI	GTMKAC	1 cut(s)	127
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	3 cut(s)	801, 1267, 1311
AcuI	CTGAAG	1 cut(s)	668
AcvI	CACGTG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	154, 663
AfiI	CCNNNNNNNGG	2 cut(s)	539, 692
AflIII	ACRYGT	2 cut(s)	37, 1060
AgsI	TTSAA	9 cut(s)	103, 551, 623, 761, 863, 884, 904, 1082, 1198
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	7 cut(s)	167, 554, 644, 990, 1076, 1108, 1338
AluI	AGCT	7 cut(s)	167, 554, 644, 990, 1076, 1108, 1338
Alw26I	GTCTC	2 cut(s)	294, 334
AlwI	GGATC	3 cut(s)	801, 1267, 1311
ApeKI	GCWGC	2 cut(s)	1172, 1289
Asp700I	GAANNNNTTC	2 cut(s)	54, 811
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	434, 937, 1246
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	700
BbrPI	CACGTG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	787
BbvI	GCAGC	2 cut(s)	1159, 1276
BccI	CCATC	4 cut(s)	110, 332, 533, 962
BceAI	ACGGC	1 cut(s)	1207
BcoDI	GTCTC	2 cut(s)	294, 334
BfaI	CTAG	2 cut(s)	393, 702
BfuAI	ACCTGC	2 cut(s)	790, 1222
BisI	GCNGC	2 cut(s)	1173, 1290
BlsI	GCNGC	2 cut(s)	1174, 1291
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	237, 699
BmsI	GCATC	4 cut(s)	163, 505, 668, 1211
BpiI	GAAGAC	1 cut(s)	787
BpuEI	CTTGAG	3 cut(s)	153, 734, 1006
Bsa29I	ATCGAT	1 cut(s)	810
BsaAI	YACGTR	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 692
Bse1I	ACTGG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	4 cut(s)	613, 973, 1190, 1202
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	539, 692
BseMII	CTCAG	2 cut(s)	816, 935
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	1159, 1276
BshVI	ATCGAT	1 cut(s)	810
BslI	CCNNNNNNNGG	2 cut(s)	539, 692
BsmAI	GTCTC	2 cut(s)	294, 334
BsmI	GAATGC	1 cut(s)	1204
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
BspACI	CCGC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	817, 936
BspDI	ATCGAT	1 cut(s)	810
BspLI	GGNNCC	2 cut(s)	237, 699
BspMI	ACCTGC	2 cut(s)	790, 1222
BspPI	GGATC	3 cut(s)	801, 1267, 1311
BspTNI	GGTCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	927
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
Bst4CI	ACNGT	4 cut(s)	488, 961, 1018, 1345
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	975
BstDEI	CTNAG	3 cut(s)	825, 944, 1158
BstF5I	GGATG	4 cut(s)	613, 973, 1190, 1202
BstKTI	GATC	6 cut(s)	796, 984, 1131, 1239, 1275, 1306
BstMAI	GTCTC	2 cut(s)	294, 334
BstMBI	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 641, 1082, 1228
BstNSI	RCATGY	3 cut(s)	41, 977, 1064
BstV1I	GCAGC	2 cut(s)	1159, 1276
BstV2I	GAAGAC	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	1300
Bsu15I	ATCGAT	1 cut(s)	810
BsuTUI	ATCGAT	1 cut(s)	810
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	613, 973, 1190, 1202
BtsIMutI	CAGTG	2 cut(s)	493, 888
BveI	ACCTGC	2 cut(s)	790, 1222
Cac8I	GCNNGC	1 cut(s)	975
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	153, 662
CspCI	CAANNNNNGTGG	2 cut(s)	991, 1026
CviAII	CATG	7 cut(s)	38, 524, 584, 868, 974, 1061, 1264
CviQI	GTAC	2 cut(s)	153, 662
DdeI	CTNAG	3 cut(s)	825, 944, 1158
DpnI	GATC	6 cut(s)	795, 983, 1130, 1238, 1274, 1305
DpnII	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
Eco24I	GRGCYC	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	1280
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	638
EcoRV	GATATC	1 cut(s)	1280
EcoT22I	ATGCAT	1 cut(s)	1204
EcoT38I	GRGCYC	1 cut(s)	700
FaeI	CATG	7 cut(s)	41, 527, 587, 871, 977, 1064, 1267
FatI	CATG	7 cut(s)	37, 523, 583, 867, 973, 1060, 1263
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	1173, 1290
FokI	GGATG	4 cut(s)	620, 980, 1177, 1189
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	2 cut(s)	1173, 1290
FspBI	CTAG	2 cut(s)	393, 702
GluI	GCNGC	2 cut(s)	1173, 1290
Hin1II	CATG	7 cut(s)	41, 527, 587, 871, 977, 1064, 1267
HincII	GTYRAC	3 cut(s)	190, 565, 1255
HindII	GTYRAC	3 cut(s)	190, 565, 1255
HinfI	GANTC	9 cut(s)	22, 380, 454, 479, 594, 783, 807, 812, 940
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	3 cut(s)	434, 937, 1246
Hpy166II	GTNNAC	6 cut(s)	128, 190, 565, 576, 854, 1255
Hpy8I	GTNNAC	6 cut(s)	128, 190, 565, 576, 854, 1255
HpyAV	CCTTC	5 cut(s)	39, 248, 253, 643, 1261
HpyCH4III	ACNGT	4 cut(s)	488, 961, 1018, 1345
HpyCH4IV	ACGT	3 cut(s)	93, 637, 856
HpyCH4V	TGCA	3 cut(s)	518, 1202, 1231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 641, 1082, 1228
HpyF3I	CTNAG	3 cut(s)	825, 944, 1158
HpySE526I	ACGT	3 cut(s)	93, 637, 856
Hsp92II	CATG	7 cut(s)	41, 527, 587, 871, 977, 1064, 1267
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
LmnI	GCTCC	2 cut(s)	686, 703
Lsp1109I	GCAGC	2 cut(s)	1159, 1276
LweI	GCATC	4 cut(s)	163, 505, 668, 1211
MaeI	CTAG	2 cut(s)	393, 702
MaeII	ACGT	3 cut(s)	93, 637, 856
MaeIII	GTNAC	3 cut(s)	40, 669, 1056
MalI	GATC	6 cut(s)	795, 983, 1130, 1238, 1274, 1305
MboI	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
MboII	GAAGA	9 cut(s)	17, 263, 328, 524, 773, 789, 792, 916, 1176
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	5 cut(s)	98, 131, 519, 579, 1044
MlyI	GAGTC	2 cut(s)	463, 777
MmeI	TCCRAC	3 cut(s)	437, 456, 784
Mph1103I	ATGCAT	1 cut(s)	1204
MroXI	GAANNNNTTC	2 cut(s)	54, 811
MseI	TTAA	6 cut(s)	18, 189, 312, 402, 951, 1354
MslI	CAYNNNNRTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	1204
MwoI	GCNNNNNNNGC	4 cut(s)	173, 641, 1082, 1228
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
NlaIII	CATG	7 cut(s)	41, 527, 587, 871, 977, 1064, 1267
NlaIV	GGNNCC	2 cut(s)	237, 699
NmeAIII	GCCGAG	1 cut(s)	1032
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	1204
NspI	RCATGY	3 cut(s)	41, 977, 1064
PaeI	GCATGC	1 cut(s)	977
PaqCI	CACCTGC	1 cut(s)	1222
PciI	ACATGT	2 cut(s)	37, 1060
PctI	GAATGC	1 cut(s)	1204
PdmI	GAANNNNTTC	2 cut(s)	54, 811
PfeI	GAWTC	7 cut(s)	22, 380, 479, 594, 807, 812, 940
PkrI	GCNGC	2 cut(s)	1174, 1291
PleI	GAGTC	2 cut(s)	462, 777
PmaCI	CACGTG	1 cut(s)	638
PmlI	CACGTG	1 cut(s)	638
PpsI	GAGTC	2 cut(s)	462, 777
Ppu21I	YACGTR	1 cut(s)	638
PscI	ACATGT	2 cut(s)	37, 1060
PspCI	CACGTG	1 cut(s)	638
PspN4I	GGNNCC	2 cut(s)	237, 699
PspPI	GGNCC	1 cut(s)	235
RsaI	GTAC	2 cut(s)	154, 663
RsaNI	GTAC	2 cut(s)	153, 662
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	6 cut(s)	18, 189, 312, 402, 951, 1354
SatI	GCNGC	2 cut(s)	1173, 1290
Sau3AI	GATC	6 cut(s)	793, 981, 1128, 1236, 1272, 1303
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	463, 777
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	4 cut(s)	163, 505, 668, 1211
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	3 cut(s)	168, 713, 985
SmoI	CTYRAG	3 cut(s)	168, 713, 985
SphI	GCATGC	1 cut(s)	977
Sse9I	AATT	5 cut(s)	98, 131, 519, 579, 1044
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	393, 702
TaaI	ACNGT	4 cut(s)	488, 961, 1018, 1345
TaiI	ACGT	3 cut(s)	96, 640, 859
TaqI	TCGA	5 cut(s)	58, 214, 810, 1239, 1340
TasI	AATT	5 cut(s)	98, 131, 519, 579, 1044
TfiI	GAWTC	7 cut(s)	22, 380, 479, 594, 807, 812, 940
Tru1I	TTAA	6 cut(s)	18, 189, 312, 402, 951, 1354
Tru9I	TTAA	6 cut(s)	18, 189, 312, 402, 951, 1354
TscAI	CASTG	2 cut(s)	493, 895
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	1172, 1289
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	7 cut(s)	190, 512, 572, 756, 1106, 1170, 1280
TspRI	CASTG	2 cut(s)	493, 895
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	3 cut(s)	41, 977, 1064
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	54, 811
XspI	CTAG	2 cut(s)	393, 702
Zsp2I	ATGCAT	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.