Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

14556798 .. 14562675

Gene Structure 5878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGAAACCTTCAGCACTGCATTTCCAACTACTGTTAACAGGAATTTTTCTATGCGAACTTCGCCGCCGCCTTCGATTCATTTTTGGTTCTAAACAATCACACACACCTGCAACAATGTCGTCGAGGATTTGCGTCAAGAATTTACCGAAACACGTCGACGATAAGAAGCTCCGGGAGCTTTTCTCCGAGAAAGGAGAAGTCACGGACGCCAAGCTCATGCGAACCAAGGAAGGCAAGAGCCGCCAGTTCGCTTTCATAGGGTTCCGCTCCGAGCTTCAAGCTCAGGAGGCCATCAAATACTTCAATAAAACTTTTATTGATACTTACCGGATTAGTTGCGAGCTTGCTCGGAAAGTTGGGGATCCCGAGATTCCGAGGCCGTGGAGTCGACATACTAAGGAGAAGGAGAAGAGAGAGAGTGAAGGTGCTGCCGCGGCGGAGGCGAAAAGCCGGAGCGGAGTGGGAGGGAAGAGGAGTGAGGATGAGGATGAGATTGATGATCCTAAGCTTAAGGAGTTTTTGCAGGTGATGCAGCCTAGGGCTAAGTCGAAATTGTGGTCGAATGACACTGTGATTGCTAATGTTGAGGGGAAAATTGGGAAAGGAGAGAAGAAGAGAGAGCAGAGGAAGAAGAAGGGGAATGAAGAGAGTTTGGCGACGATGGATGTGGAGGTAGAGGAGGAAGTGGAGAAGGATGATTCACACAATGTAGCCAAGGATAATGTGGTTTCGGATATGGATTACTTCAAGAGTAGAGTGAAGAAGGATTGGTCGGATTCTGAAAGTAGTGACAGTGATGATGAGGAAGAGGAGGAGGAAGGTGAAGAATTAGATGCTAAGGAAGAAGCTGAGGTTAATGAAGAAGAGGCAGGAGAGGAAAAAGTACTTGCACAGAGTAACCCTTCGTCCAGTTTGAAAGATGAGAAAGATGAAATGCTTGATACTAGTCGGCTTTTTGTTCGAAATTTGCCATTTACAGCAACAGAGGACGAGTTGGAAGAGCATTTTTGCAAATTCGGGGATGCACAAGTTCATCTTGTTGTTGATAAAGAAATGAATCGGTCCAAGGGAATTGCTTATGTTCTTTACTCGCATCCAGAATCGGCACAAAGGGCATTAGAAGAATTAGACGGTTCAATTTTTCAAGGAAGATTGTTGCATGTTATGCCAGCAAAACAAAAAAACCCGTCTCCAGGGGCTGATGATTCGGCAAACCAAGCTTCAAAGTCTCTTAAGCAACAAAGGGAGGAGAAAAGGAAAGCATCCGAAGCTAGTGGAGATACACGAGCTTGGAATAGTTTATTTATACGCACTGAGACAGCTGTTGATCACTTAGCTCGGAAGTTTGGGGTGAGCAAGAGTGATTTTCTTGACCCGCAAGCTGATGATGTCGCTGTACGTGTTGCTCAAGCAGAGACACAAGTGATTGCACAGACAAAAAAGGCTCTTACAAATGCTGGTGTAAATGTAGAATCTTTAGAGAATTTTGCTGCTGGGAAAGGTGGTGATATGAAAAGAAGCAACCATGTTATACTTGTGAAAAACTTGCCATATGGTTCTTCGGATAGTGAACTAGGAAACATGTTTGGAAAATTTGGGAGTTTTGAAAAAATCATTATGCCTCCGACAAAGACATTGGCGTTGGTTGTCTTTTTTGAACCTTCTGGAGCTCGAGCAGCTTTTAAAGGTTTGGCGTACAAGAAATACAAGGATGTTCCTCTATATTTGGAATGGGCTCCTGGCAATGTTCTTAGTCCAAGTTCAACAGCTGAGAGCAATGAAAAGAAGCATTCTGCTGTTGCTGAACATAAGCCACTGGTGGAAGGAACTCCAGATGATCTTGATCTTGATCCTGATAGAGTTGAGTCACGAACTCTATATGTCAAGAATTTGAACTTCAAGACATCTGACGAGAGCTTGAAGAAGCATTTTGAACAAGTGAAGGAGGGAAGAATATTGAGCACCAAGGTGAAGAAACACTTGAAAAAAGGGAAGAATCTTTCAATGGGATTTGGTTTTGTAGAATTTGACTCTGTGGAGACAGCCACAGAGGTTTGCAAGAGTTTACAGGGAACAATTTTGGATGGCCACCAACTTATTTTGCAACATTGTCATGCCAAGCAAGATGACGTGCCAAAAAAAGTTGTGAAGGACAAAAGTTCAACAAAAATACTTGTAAAAAATGTAGCCTTTGAGGCGACAAAGAAAGAGCTTCGACAGTTGTTTAGTACATATGGCGAGATTAAAAGCTTGCGGTTACCAAACAGATTGGGACAGCATAGAGGCTTTGCATTTGTGGAGTTTGCCACAAAGCAAGAGGCAGACAATGCCATCCAAGCGCTTGCAAGCACACATCTGTACGGTCGCCATCTGGTTCTGGAGAGAGCAAAGGAAGGTGAGACCTTGGAAGATTTAAGAGCTCGAATAGCTGCTCAGTTCACAGATGACCAAAATACTATTTCCAGGAAAAGGAAGGCTGTCGCAACCTTGGATGAAGATAACATGAAATTTGATATGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

841

Amino Acids

94.67

Weight (kDa)

6.25

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	43 - 111	5.1e-15	RNA recognition motif
RRM_1	PF00076	318 - 386	1.2e-16	RNA recognition motif
RRM_1	PF00076	511 - 571	1.9e-07	RNA recognition motif
RRM_1	PF00076	626 - 699	5.8e-13	RNA recognition motif
RRM_1	PF00076	724 - 791	3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	115, 514
Acc36I	ACCTGC	2 cut(s)	115, 514
AccBSI	CCGCTC	2 cut(s)	267, 456
AccI	GTMKAC	2 cut(s)	156, 388
AccII	CGCG	1 cut(s)	434
AclWI	GGATC	4 cut(s)	356, 369, 494, 1844
AcoI	YGGCCR	1 cut(s)	2086
AcsI	RAATTY	9 cut(s)	42, 139, 964, 1013, 1483, 1592, 1888, 2024, 2507
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	5 cut(s)	885, 1398, 1697, 2230, 2360
AfeI	AGCGCT	1 cut(s)	2340
AfiI	CCNNNNNNNGG	2 cut(s)	1193, 2469
AflII	CTTAAG	2 cut(s)	509, 1232
AflIII	ACRYGT	3 cut(s)	151, 1399, 1581
AhlI	ACTAGT	1 cut(s)	944
AjiI	CACGTC	2 cut(s)	154, 2131
AjnI	CCWGG	3 cut(s)	1192, 1738, 2462
AleI	CACNNNNGTG	1 cut(s)	1967
Alw21I	GWGCWC	3 cut(s)	1672, 1964, 2422
Alw26I	GTCTC	6 cut(s)	1194, 1233, 1310, 1409, 2033, 2393
AlwI	GGATC	4 cut(s)	356, 369, 494, 1844
AlwNI	CAGNNNCTG	1 cut(s)	1199
Ama87I	CYCGRG	2 cut(s)	365, 1671
Aor51HI	AGCGCT	1 cut(s)	2340
AoxI	GGCC	3 cut(s)	288, 377, 2086
ApeKI	GCWGC	5 cut(s)	428, 532, 1490, 1676, 2429
ApoI	RAATTY	9 cut(s)	42, 139, 964, 1013, 1483, 1592, 1888, 2024, 2507
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspA2I	CCTAGG	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	2341
AspS9I	GGNCC	1 cut(s)	1062
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	6 cut(s)	538, 833, 1363, 1517, 1981, 2408
AsuII	TTCGAA	1 cut(s)	961
AvaI	CYCGRG	2 cut(s)	365, 1671
AvaII	GGWCC	1 cut(s)	1062
AvrII	CCTAGG	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	2088
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	3 cut(s)	1672, 1738, 2422
BauI	CACGAG	1 cut(s)	1284
Bbv12I	GWGCWC	3 cut(s)	1672, 1964, 2422
BbvCI	CCTCAGC	1 cut(s)	849
BbvI	GCAGC	5 cut(s)	415, 544, 1477, 1688, 2416
BccI	CCATC	5 cut(s)	299, 655, 2078, 2339, 2376
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	3 cut(s)	1194, 1740, 2464
BclI	TGATCA	1 cut(s)	1327
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	6 cut(s)	1194, 1233, 1310, 1409, 2033, 2393
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	4 cut(s)	537, 945, 1272, 1574
BfoI	RGCGCY	1 cut(s)	2342
BfrI	CTTAAG	2 cut(s)	509, 1232
BfuAI	ACCTGC	2 cut(s)	115, 514
BglI	GCCNNNNNGGC	1 cut(s)	2195
BlnI	CCTAGG	1 cut(s)	536
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	4 cut(s)	173, 1194, 1740, 2464
Bme18I	GGWCC	1 cut(s)	1062
BmeT110I	CYCGRG	2 cut(s)	365, 1671
BmgBI	CACGTC	2 cut(s)	154, 2131
BmgT120I	GGNCC	1 cut(s)	1062
BmiI	GGNNCC	3 cut(s)	263, 363, 1737
BmrFI	CCNGG	4 cut(s)	173, 1194, 1740, 2464
BmsI	GCATC	5 cut(s)	519, 823, 1012, 1102, 1271
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	4 cut(s)	1176, 1686, 1815, 2399
Bpu10I	CCTNAGC	4 cut(s)	282, 504, 837, 849
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	1392
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	1400
BsaBI	GATNNNNATC	2 cut(s)	1842, 1848
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	2393
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	1193, 2469
Bse1I	ACTGG	3 cut(s)	244, 909, 1821
Bse3DI	GCAATG	2 cut(s)	1750, 1783
Bse8I	GATNNNNATC	2 cut(s)	1842, 1848
BseBI	CCWGG	3 cut(s)	1194, 1740, 2464
BseJI	GATNNNNATC	2 cut(s)	1842, 1848
BseLI	CCNNNNNNNGG	2 cut(s)	1193, 2469
BseMI	GCAATG	2 cut(s)	1750, 1783
BseMII	CTCAG	5 cut(s)	296, 840, 1305, 1761, 2447
BseNI	ACTGG	3 cut(s)	244, 909, 1821
BseRI	GAGGAG	5 cut(s)	487, 692, 824, 827, 1262
BseXI	GCAGC	5 cut(s)	415, 544, 1477, 1688, 2416
BseYI	CCCAGC	1 cut(s)	1493
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	2365
BshFI	GGCC	3 cut(s)	290, 379, 2088
BsiEI	CGRYCG	1 cut(s)	2365
BsiHKAI	GWGCWC	3 cut(s)	1672, 1964, 2422
BsiHKCI	CYCGRG	2 cut(s)	365, 1671
BsiSI	CCGG	3 cut(s)	172, 328, 451
BslFI	GGGAC	1 cut(s)	2286
BslI	CCNNNNNNNGG	2 cut(s)	1193, 2469
BsmAI	GTCTC	6 cut(s)	1194, 1233, 1310, 1409, 2033, 2393
BsmBI	CGTCTC	1 cut(s)	1194
BsmFI	GGGAC	1 cut(s)	2286
BsmI	GAATGC	1 cut(s)	1789
BsnI	GGCC	3 cut(s)	290, 379, 2088
Bso31I	GGTCTC	1 cut(s)	2393
BsoBI	CYCGRG	2 cut(s)	365, 1671
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	4 cut(s)	1672, 1738, 1964, 2422
Bsp143I	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
BspANI	GGCC	3 cut(s)	290, 379, 2088
BspCNI	CTCAG	5 cut(s)	295, 841, 1306, 1762, 2446
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	263, 363, 1737
BspMI	ACCTGC	2 cut(s)	115, 514
BspPI	GGATC	4 cut(s)	356, 369, 494, 1844
BspQI	GCTCTTC	1 cut(s)	993
BspT104I	TTCGAA	1 cut(s)	961
BspTI	CTTAAG	2 cut(s)	509, 1232
BspTNI	GGTCTC	1 cut(s)	2393
BsrBI	CCGCTC	2 cut(s)	267, 456
BsrDI	GCAATG	2 cut(s)	1750, 1783
BsrI	ACTGG	3 cut(s)	244, 909, 1821
BssMI	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	1284
BssT1I	CCWWGG	7 cut(s)	225, 536, 714, 1065, 1965, 2403, 2487
Bst2BI	CACGAG	1 cut(s)	1284
Bst2UI	CCWGG	3 cut(s)	1194, 1740, 2464
Bst4CI	ACNGT	6 cut(s)	33, 571, 794, 1133, 2220, 2363
Bst6I	CTCTTC	7 cut(s)	404, 464, 608, 639, 801, 858, 993
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	2 cut(s)	509, 1232
BstAPI	GCANNNNNTGC	3 cut(s)	529, 1165, 2327
BstBAI	YACGTR	1 cut(s)	1400
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	7 cut(s)	341, 345, 1170, 1380, 2252, 2343, 2347
BstDSI	CCRYGG	2 cut(s)	380, 432
BstEII	GGTNACC	1 cut(s)	2256
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	1 cut(s)	2342
BstHHI	GCGC	1 cut(s)	2341
BstKTI	GATC	6 cut(s)	364, 502, 1330, 1840, 1846, 1852
BstMAI	GTCTC	6 cut(s)	1194, 1233, 1310, 1409, 2033, 2393
BstMBI	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
BstMCI	CGRYCG	1 cut(s)	2365
BstNI	CCWGG	3 cut(s)	1194, 1740, 2464
BstNSI	RCATGY	2 cut(s)	1163, 1585
BstPI	GGTNACC	1 cut(s)	2256
BstSCI	CCNGG	4 cut(s)	171, 1192, 1738, 2462
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	5 cut(s)	415, 544, 1477, 1688, 2416
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	290, 379, 2088
BtgI	CCRYGG	2 cut(s)	380, 432
BtrI	CACGTC	2 cut(s)	154, 2131
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	5 cut(s)	14, 567, 799, 1311, 1814
BveI	ACCTGC	2 cut(s)	115, 514
Cac8I	GCNNGC	7 cut(s)	341, 345, 1170, 1380, 2252, 2343, 2347
CaiI	CAGNNNCTG	1 cut(s)	1199
CfoI	GCGC	1 cut(s)	2341
Cfr13I	GGNCC	1 cut(s)	1062
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	2 cut(s)	121, 215
Csp6I	GTAC	5 cut(s)	884, 1397, 1696, 2229, 2359
CviAII	CATG	6 cut(s)	217, 1160, 1526, 1582, 2114, 2503
CviQI	GTAC	5 cut(s)	884, 1397, 1696, 2229, 2359
DpnI	GATC	6 cut(s)	363, 501, 1329, 1839, 1845, 1851
DpnII	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
DraI	TTTAAA	1 cut(s)	1684
EaeI	YGGCCR	1 cut(s)	2086
Eam1104I	CTCTTC	7 cut(s)	404, 464, 608, 639, 801, 858, 993
EarI	CTCTTC	7 cut(s)	404, 464, 608, 639, 801, 858, 993
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	2 cut(s)	1670, 2420
Eco130I	CCWWGG	7 cut(s)	225, 536, 714, 1065, 1965, 2403, 2487
Eco24I	GRGCYC	3 cut(s)	1672, 1738, 2422
Eco31I	GGTCTC	1 cut(s)	2393
Eco47I	GGWCC	1 cut(s)	1062
Eco47III	AGCGCT	1 cut(s)	2340
Eco53kI	GAGCTC	2 cut(s)	1670, 2420
Eco88I	CYCGRG	2 cut(s)	365, 1671
Eco91I	GGTNACC	1 cut(s)	2256
EcoICRI	GAGCTC	2 cut(s)	1670, 2420
EcoO65I	GGTNACC	1 cut(s)	2256
EcoRII	CCWGG	3 cut(s)	1192, 1738, 2462
EcoT14I	CCWWGG	7 cut(s)	225, 536, 714, 1065, 1965, 2403, 2487
EcoT38I	GRGCYC	3 cut(s)	1672, 1738, 2422
ErhI	CCWWGG	7 cut(s)	225, 536, 714, 1065, 1965, 2403, 2487
Esp3I	CGTCTC	1 cut(s)	1194
FaeI	CATG	6 cut(s)	220, 1163, 1529, 1585, 2117, 2506
FalI	AAGNNNNNCTT	4 cut(s)	1020, 1052, 1964, 1996
FaqI	GGGAC	1 cut(s)	2286
FatI	CATG	6 cut(s)	216, 1159, 1525, 1581, 2113, 2502
FauI	CCCGC	1 cut(s)	1383
FauNDI	CATATG	2 cut(s)	1552, 2233
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	2 cut(s)	156, 388
FriOI	GRGCYC	3 cut(s)	1672, 1738, 2422
FspBI	CTAG	4 cut(s)	537, 945, 1272, 1574
GlaI	GCGC	1 cut(s)	2340
GsaI	CCCAGC	1 cut(s)	1497
GsuI	CTGGAG	4 cut(s)	1176, 1686, 1815, 2399
HaeII	RGCGCY	1 cut(s)	2342
HaeIII	GGCC	3 cut(s)	290, 379, 2088
HapII	CCGG	3 cut(s)	172, 328, 451
HgaI	GACGC	2 cut(s)	121, 215
HhaI	GCGC	1 cut(s)	2341
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	220, 1163, 1529, 1585, 2117, 2506
Hin6I	GCGC	1 cut(s)	2339
HinP1I	GCGC	1 cut(s)	2339
HincII	GTYRAC	3 cut(s)	36, 157, 389
HindII	GTYRAC	3 cut(s)	36, 157, 389
HindIII	AAGCTT	3 cut(s)	506, 1218, 2248
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	172, 328, 451
HphI	GGTGA	6 cut(s)	538, 833, 1363, 1517, 1981, 2408
Hpy166II	GTNNAC	6 cut(s)	36, 157, 389, 1571, 2066, 2439
Hpy8I	GTNNAC	6 cut(s)	36, 157, 389, 1571, 2066, 2439
Hpy99I	CGWCG	4 cut(s)	124, 158, 161, 661
HpyCH4III	ACNGT	6 cut(s)	33, 571, 794, 1133, 2220, 2363
HpyCH4IV	ACGT	3 cut(s)	153, 1399, 2130
HpySE526I	ACGT	3 cut(s)	153, 1399, 2130
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	220, 1163, 1529, 1585, 2117, 2506
HspAI	GCGC	1 cut(s)	2339
Ksp22I	TGATCA	1 cut(s)	1327
KspAI	GTTAAC	1 cut(s)	36
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	6 cut(s)	174, 175, 272, 453, 1667, 1741
Lsp1109I	GCAGC	5 cut(s)	415, 544, 1477, 1688, 2416
LweI	GCATC	5 cut(s)	519, 823, 1012, 1102, 1271
MaeI	CTAG	4 cut(s)	537, 945, 1272, 1574
MaeII	ACGT	3 cut(s)	153, 1399, 2130
MaeIII	GTNAC	5 cut(s)	199, 788, 896, 1866, 2256
MalI	GATC	6 cut(s)	363, 501, 1329, 1839, 1845, 1851
MbiI	CCGCTC	2 cut(s)	267, 456
MboI	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	4 cut(s)	1672, 1738, 1964, 2422
MlsI	TGGCCA	1 cut(s)	2088
MluNI	TGGCCA	1 cut(s)	2088
MlyI	GAGTC	3 cut(s)	394, 1874, 2024
MmeI	TCCRAC	4 cut(s)	49, 753, 975, 1649
Mox20I	TGGCCA	1 cut(s)	2088
MscI	TGGCCA	1 cut(s)	2088
MseI	TTAA	7 cut(s)	35, 510, 855, 1233, 1683, 2244, 2414
MslI	CAYNNNNRTG	2 cut(s)	1967, 2112
Msp20I	TGGCCA	1 cut(s)	2088
MspA1I	CMGCKG	3 cut(s)	434, 1322, 1769
MspCI	CTTAAG	2 cut(s)	509, 1232
MspI	CCGG	3 cut(s)	172, 328, 451
MspR9I	CCNGG	4 cut(s)	173, 1194, 1740, 2464
Mva1269I	GAATGC	1 cut(s)	1789
MvaI	CCWGG	3 cut(s)	1194, 1740, 2464
MvnI	CGCG	1 cut(s)	434
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	2 cut(s)	1552, 2233
NdeII	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
NlaIII	CATG	6 cut(s)	220, 1163, 1529, 1585, 2117, 2506
NlaIV	GGNNCC	3 cut(s)	263, 363, 1737
NmuCI	GTSAC	3 cut(s)	199, 788, 1866
NspI	RCATGY	2 cut(s)	1163, 1585
NspV	TTCGAA	1 cut(s)	961
OliI	CACNNNNGTG	1 cut(s)	1967
PaeR7I	CTCGAG	1 cut(s)	1671
PaqCI	CACCTGC	2 cut(s)	115, 514
PciI	ACATGT	1 cut(s)	1581
PciSI	GCTCTTC	1 cut(s)	993
PctI	GAATGC	1 cut(s)	1789
PfeI	GAWTC	9 cut(s)	75, 370, 698, 776, 1057, 1100, 1205, 1472, 1996
PfoI	TCCNGGA	2 cut(s)	171, 2462
PleI	GAGTC	3 cut(s)	393, 1873, 2024
PpsI	GAGTC	3 cut(s)	393, 1873, 2024
Ppu21I	YACGTR	1 cut(s)	1400
PscI	ACATGT	1 cut(s)	1581
Psp124BI	GAGCTC	2 cut(s)	1672, 2422
Psp6I	CCWGG	3 cut(s)	1192, 1738, 2462
PspEI	GGTNACC	1 cut(s)	2256
PspFI	CCCAGC	1 cut(s)	1493
PspGI	CCWGG	3 cut(s)	1192, 1738, 2462
PspN4I	GGNNCC	3 cut(s)	263, 363, 1737
PspPI	GGNCC	1 cut(s)	1062
PspXI	VCTCGAGB	1 cut(s)	1671
PstNI	CAGNNNCTG	1 cut(s)	1199
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	2 cut(s)	1322, 1769
RsaI	GTAC	5 cut(s)	885, 1398, 1697, 2230, 2360
RsaNI	GTAC	5 cut(s)	884, 1397, 1696, 2229, 2359
RseI	CAYNNNNRTG	2 cut(s)	1967, 2112
SacI	GAGCTC	2 cut(s)	1672, 2422
SacII	CCGCGG	1 cut(s)	435
SalI	GTCGAC	2 cut(s)	155, 387
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	7 cut(s)	35, 510, 855, 1233, 1683, 2244, 2414
Sau3AI	GATC	6 cut(s)	361, 499, 1327, 1837, 1843, 1849
Sau96I	GGNCC	1 cut(s)	1062
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	3 cut(s)	394, 1874, 2024
ScrFI	CCNGG	4 cut(s)	173, 1194, 1740, 2464
SduI	GDGCHC	4 cut(s)	1672, 1738, 1964, 2422
SfaNI	GCATC	5 cut(s)	519, 823, 1012, 1102, 1271
Sfr274I	CTCGAG	1 cut(s)	1671
Sfr303I	CCGCGG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	961
SgrBI	CCGCGG	1 cut(s)	435
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	1062
SlaI	CTCGAG	1 cut(s)	1671
SmiMI	CAYNNNNRTG	2 cut(s)	1967, 2112
SmlI	CTYRAG	4 cut(s)	509, 1232, 1407, 1671
SmoI	CTYRAG	4 cut(s)	509, 1232, 1407, 1671
SpeI	ACTAGT	1 cut(s)	944
SspI	AATATT	1 cut(s)	1956
SspMI	CTAG	4 cut(s)	537, 945, 1272, 1574
SstI	GAGCTC	2 cut(s)	1672, 2422
StyD4I	CCNGG	4 cut(s)	171, 1192, 1738, 2462
StyI	CCWWGG	7 cut(s)	225, 536, 714, 1065, 1965, 2403, 2487
TaaI	ACNGT	6 cut(s)	33, 571, 794, 1133, 2220, 2363
TaiI	ACGT	3 cut(s)	156, 1402, 2133
TaqII	GACCGA	1 cut(s)	1050
TatI	WGTACW	2 cut(s)	883, 2228
TauI	GCSGC	5 cut(s)	66, 69, 243, 434, 437
TfiI	GAWTC	9 cut(s)	75, 370, 698, 776, 1057, 1100, 1205, 1472, 1996
Tru1I	TTAA	7 cut(s)	35, 510, 855, 1233, 1683, 2244, 2414
Tru9I	TTAA	7 cut(s)	35, 510, 855, 1233, 1683, 2244, 2414
TscAI	CASTG	5 cut(s)	21, 574, 799, 1318, 1821
TseFI	GTSAC	3 cut(s)	199, 788, 1866
TseI	GCWGC	5 cut(s)	428, 532, 1490, 1676, 2429
Tsp45I	GTSAC	3 cut(s)	199, 788, 1866
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	5 cut(s)	21, 574, 799, 1318, 1821
Vha464I	CTTAAG	2 cut(s)	509, 1232
VpaK11BI	GGWCC	1 cut(s)	1062
XapI	RAATTY	9 cut(s)	42, 139, 964, 1013, 1483, 1592, 1888, 2024, 2507
XceI	RCATGY	2 cut(s)	1163, 1585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	1671
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	2 cut(s)	156, 388
XspI	CTAG	4 cut(s)	537, 945, 1272, 1574
ZrmI	AGTACT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.