Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

14644717 .. 14650544

Gene Structure 5828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGCGGTCGTCGAGGATTTGCGTCAAGAATTTACCGAAACACGTCGACGATAAGAAGCTCCGGGAGCTTTTCTCCGAGAAAGGAGAAGTCACGGACGCCAAGCTCATGCGAACCAAGGAAGGCAAGAGCCGCCAGTTCGCTTTCATAGGGTTCCGCTCCGAGCTTCAAGCTCAGGAGGCCATCAAATACTTCAATAAAACTTTTATTGATACTTACCGGATCAGTTGCGAGCTTGCTCGGAAAGTTGGGGATCCCGAGATTCCGAGGCCGTGGAGTCGACATACTAAGGAGAAGGAGAAGAGAGAGAGTGAAGGTGCTGCCGCGGCGGAGGCGAAAAGCCGGAGCGGAGTGGGAGGGAAGAGGAGTGAGGATGAGGATGAGGTTGATGATCCTAAGCTTAAGGAGTTTTTGCAGGTGATGCAGCCTAGGGCTAAGTCGAAATTGTGGTCGAATGACACTGTGATTGCTAATGTTGAGGGGAAAATTGGGAAAGGAGAGAAGAAGAGAGAGCAGAGGAAGAAGGGGAATGAAGAGAGTTTGGCGACGATGGATGTGGAGGTAGAGGAGGAAGTGGAGAAGGATGATTCACACAATGTGGCCAAGGATAATGTGGTTTCGGATATGGATTACTTCAAGAGTAGAGTGAAGAAGGATTGGTCGGATTCTGAAAGTAGTGACAGTGATGATGAGGAAGAGGAGGAGGAGGAAGGTGAAGAATTAGATGCTAAGGAAGAAGCTGAGGTTAATGAAGAAGAGGCAGGAGAGGAACAAGTACTTGCACAGAGTAATCCTTCGTCCAGTTTGAAAGATGAGAAAGATGAAATGCTTGATACTAGTCGGCTTTTTGTTCGAAATTTGCCATTTACAGCAACAGAGGACGAGTTGGAAGAGCATTTTTGCAAATTCGGGGATGCACAAGTTCATCTTGTTGTTGATAAAGAAATGAATCGGTCCAAGGGAATTGCTTATGTTCTTTACTCGCATCCAGAATCGGCACAAAGGGCATTAGAAGAATTAGACGGTTCAATTTTTCAAGGAAGATTGTTGCATGTTATGCCAGCAAAACAAAAAAAACCGTCTCCAGGGGCTGATGATTTGGCAAACCAAGCTTCAAAGTCTCTTAAGCAACAAAGGGAGGAGAAAAGGAAAGCATCCGAAGCTAGTGGAGATACACGAGCATGGAATAGTTTGTTTATACGCACTGAGACAGCTGTTGATCACTTAGCTCGGAAGTTTGGGGTGAGCAAGAGTGATTTTCTTGACCCGCAAGCTGATGATGTCGCTGTACGTGTTGCTCAAGCAGAGACACAAGTGATTGCACAGACAAAAAAGGCTCTTACAAATGCTGGTGTAAATGTAGAATCTTTAGAGAATTTTGCTGCTGGGAAAGGTGGTGATATGAAAAGAAGCAACCATGTTATACTTGTGAAAAACTTGCCATATGGTTCTTCTGATAGTGAACTAGGAAACATGTTTGGAAAATTTGGGAGTTTTGAAAAAATCATTATGCCTCCGACAAAGACATTGGCGTTGGTTGTCTTTTTTGAACCTTCTGGAGCTCGAGCCGCTTTTAAAGGTTTGGCGTACAAGAAATACAAGGATGTTCCTCTATATTTGGAATGGGCTCCTGGCAATGTTCTTAGTCCAAGTTCAACAGCTGAGAGCAATGAAAAGAAGCATTCTGCTGTTGCTGAACATAAGCCACTGGTGGAAGGAACTCCAGATGATCTTGATCTTGATCCTGATAGAGTTGAGTCACGAACTCTATATGTCAAGAATTTGAACTTCAAGACATCTGACGAGAGCTTGAAGAAGCATTTTGAACAAGTGAAGGAGGGAAGAATATTGAGCACCAAGGTGAAGAAACACTTGAAAAAAGGGAAGAATCTTTCAATGGGATTTGGTTTTGTAGAATTTGACTCTGTGGAGACAGCCACAGAGGTTTGCAAGAGTTTACAGGGAACAATTTTGGATGGCCACCAACTTATTTTGCAACATTGTCATGCCAAGCAAGATGACGTGCCAAAAAAAGTTGTGAAGGACAAAAGTTCAACAAAAATACTTGTAAAAAATGTAGCCTTTGAGGCTACAAAGAAAGAGCTTCGACAGTTGTTTAGTACATATGGCGAGATTAAAAGCTTGCGGTTACCAAACAGATTGGGACAGCATAGAGGCTTTGCATTTGTGGAGTTTGCCACAAAGCAAGAGGCAGAAAATGCCATCCAAGCGCTTGCAAGCACACATCTGTACGGTCGCCATCTGGTTCTGGAGAGAGCAAAGGAAGGTGAGACCTTGGAAGATTTAAGAGCTCGAATAGCTGCTCAGTTCACAGATGACCAAAATACTATTTCCAGGAAAAGGAAGGCTGTCGCAACCTTGGATGAAGATAACATGAAATTTGATATGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

804

Amino Acids

90.47

Weight (kDa)

5.86

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	6 - 74	4.8e-15	RNA recognition motif
RRM_1	PF00076	281 - 349	1.2e-16	RNA recognition motif
RRM_1	PF00076	474 - 534	1.8e-07	RNA recognition motif
RRM_1	PF00076	589 - 662	5.5e-13	RNA recognition motif
RRM_1	PF00076	687 - 754	1.4e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccBSI	CCGCTC	2 cut(s)	156, 345
AccI	GTMKAC	2 cut(s)	45, 277
AccII	CGCG	1 cut(s)	323
AclWI	GGATC	5 cut(s)	227, 245, 258, 383, 1733
AcoI	YGGCCR	2 cut(s)	597, 1975
AcsI	RAATTY	8 cut(s)	28, 853, 902, 1372, 1481, 1777, 1913, 2396
AcyI	GRCGYC	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	5 cut(s)	774, 1287, 1586, 2119, 2249
AfeI	AGCGCT	1 cut(s)	2229
AfiI	CCNNNNNNNGG	2 cut(s)	1082, 2358
AflII	CTTAAG	2 cut(s)	398, 1121
AflIII	ACRYGT	3 cut(s)	40, 1288, 1470
AhlI	ACTAGT	1 cut(s)	833
AjiI	CACGTC	2 cut(s)	43, 2020
AjnI	CCWGG	3 cut(s)	1081, 1627, 2351
AleI	CACNNNNGTG	1 cut(s)	1856
Alw21I	GWGCWC	3 cut(s)	1561, 1853, 2311
Alw26I	GTCTC	6 cut(s)	1083, 1122, 1199, 1298, 1922, 2282
AlwI	GGATC	5 cut(s)	227, 245, 258, 383, 1733
AlwNI	CAGNNNCTG	1 cut(s)	1088
Ama87I	CYCGRG	2 cut(s)	254, 1560
Aor51HI	AGCGCT	1 cut(s)	2229
AoxI	GGCC	4 cut(s)	177, 266, 597, 1975
ApeKI	GCWGC	4 cut(s)	317, 421, 1379, 2318
ApoI	RAATTY	8 cut(s)	28, 853, 902, 1372, 1481, 1777, 1913, 2396
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	2230
AspS9I	GGNCC	1 cut(s)	951
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	6 cut(s)	427, 722, 1252, 1406, 1870, 2297
AsuII	TTCGAA	1 cut(s)	850
AvaI	CYCGRG	2 cut(s)	254, 1560
AvaII	GGWCC	1 cut(s)	951
AvrII	CCTAGG	1 cut(s)	425
BalI	TGGCCA	2 cut(s)	599, 1977
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	3 cut(s)	1561, 1627, 2311
BauI	CACGAG	1 cut(s)	1173
Bbv12I	GWGCWC	3 cut(s)	1561, 1853, 2311
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	4 cut(s)	304, 433, 1366, 2305
BccI	CCATC	5 cut(s)	188, 541, 1967, 2228, 2265
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	1083, 1629, 2353
BclI	TGATCA	1 cut(s)	1216
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	6 cut(s)	1083, 1122, 1199, 1298, 1922, 2282
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	4 cut(s)	426, 834, 1161, 1463
BfoI	RGCGCY	1 cut(s)	2231
BfrI	CTTAAG	2 cut(s)	398, 1121
BfuAI	ACCTGC	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	2084
BisI	GCNGC	8 cut(s)	130, 318, 321, 324, 422, 1380, 1566, 2319
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	8 cut(s)	131, 319, 322, 325, 423, 1381, 1567, 2320
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	4 cut(s)	62, 1083, 1629, 2353
Bme18I	GGWCC	1 cut(s)	951
BmeT110I	CYCGRG	2 cut(s)	254, 1560
BmgBI	CACGTC	2 cut(s)	43, 2020
BmgT120I	GGNCC	1 cut(s)	951
BmiI	GGNNCC	3 cut(s)	152, 252, 1626
BmrFI	CCNGG	4 cut(s)	62, 1083, 1629, 2353
BmsI	GCATC	5 cut(s)	408, 712, 901, 991, 1160
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	4 cut(s)	1065, 1575, 1704, 2288
Bpu10I	CCTNAGC	4 cut(s)	171, 393, 726, 738
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	1281
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	1289
BsaBI	GATNNNNATC	2 cut(s)	1731, 1737
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	2282
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	1082, 2358
Bse1I	ACTGG	3 cut(s)	133, 798, 1710
Bse3DI	GCAATG	2 cut(s)	1639, 1672
Bse8I	GATNNNNATC	2 cut(s)	1731, 1737
BseBI	CCWGG	3 cut(s)	1083, 1629, 2353
BseJI	GATNNNNATC	2 cut(s)	1731, 1737
BseLI	CCNNNNNNNGG	2 cut(s)	1082, 2358
BseMI	GCAATG	2 cut(s)	1639, 1672
BseMII	CTCAG	5 cut(s)	185, 729, 1194, 1650, 2336
BseNI	ACTGG	3 cut(s)	133, 798, 1710
BseRI	GAGGAG	6 cut(s)	376, 578, 710, 713, 716, 1151
BseXI	GCAGC	4 cut(s)	304, 433, 1366, 2305
BseYI	CCCAGC	1 cut(s)	1382
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	2 cut(s)	8, 2254
BshFI	GGCC	4 cut(s)	179, 268, 599, 1977
BsiEI	CGRYCG	2 cut(s)	8, 2254
BsiHKAI	GWGCWC	3 cut(s)	1561, 1853, 2311
BsiHKCI	CYCGRG	2 cut(s)	254, 1560
BsiSI	CCGG	3 cut(s)	61, 217, 340
BslFI	GGGAC	1 cut(s)	2175
BslI	CCNNNNNNNGG	2 cut(s)	1082, 2358
BsmAI	GTCTC	6 cut(s)	1083, 1122, 1199, 1298, 1922, 2282
BsmBI	CGTCTC	1 cut(s)	1083
BsmFI	GGGAC	1 cut(s)	2175
BsmI	GAATGC	1 cut(s)	1678
BsnI	GGCC	4 cut(s)	179, 268, 599, 1977
Bso31I	GGTCTC	1 cut(s)	2282
BsoBI	CYCGRG	2 cut(s)	254, 1560
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	4 cut(s)	1561, 1627, 1853, 2311
Bsp143I	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
BspANI	GGCC	4 cut(s)	179, 268, 599, 1977
BspCNI	CTCAG	5 cut(s)	184, 730, 1195, 1651, 2335
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	3 cut(s)	152, 252, 1626
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	5 cut(s)	227, 245, 258, 383, 1733
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	1 cut(s)	850
BspTI	CTTAAG	2 cut(s)	398, 1121
BspTNI	GGTCTC	1 cut(s)	2282
BsrBI	CCGCTC	2 cut(s)	156, 345
BsrDI	GCAATG	2 cut(s)	1639, 1672
BsrI	ACTGG	3 cut(s)	133, 798, 1710
BssMI	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	1173
BssT1I	CCWWGG	7 cut(s)	114, 425, 600, 954, 1854, 2292, 2376
Bst2BI	CACGAG	1 cut(s)	1173
Bst2UI	CCWGG	3 cut(s)	1083, 1629, 2353
Bst4CI	ACNGT	6 cut(s)	460, 680, 1022, 1077, 2109, 2252
Bst6I	CTCTTC	7 cut(s)	293, 353, 497, 525, 687, 747, 882
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	2 cut(s)	398, 1121
BstAPI	GCANNNNNTGC	3 cut(s)	418, 1054, 2216
BstBAI	YACGTR	1 cut(s)	1289
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	7 cut(s)	230, 234, 1059, 1269, 2141, 2232, 2236
BstDSI	CCRYGG	2 cut(s)	269, 321
BstEII	GGTNACC	1 cut(s)	2145
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	2231
BstHHI	GCGC	1 cut(s)	2230
BstKTI	GATC	7 cut(s)	222, 253, 391, 1219, 1729, 1735, 1741
BstMAI	GTCTC	6 cut(s)	1083, 1122, 1199, 1298, 1922, 2282
BstMBI	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
BstMCI	CGRYCG	2 cut(s)	8, 2254
BstNI	CCWGG	3 cut(s)	1083, 1629, 2353
BstNSI	RCATGY	2 cut(s)	1052, 1474
BstPI	GGTNACC	1 cut(s)	2145
BstSCI	CCNGG	4 cut(s)	60, 1081, 1627, 2351
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	4 cut(s)	304, 433, 1366, 2305
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	179, 268, 599, 1977
BtgI	CCRYGG	2 cut(s)	269, 321
BtrI	CACGTC	2 cut(s)	43, 2020
BtsIMutI	CAGTG	4 cut(s)	456, 685, 1200, 1703
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	7 cut(s)	230, 234, 1059, 1269, 2141, 2232, 2236
CaiI	CAGNNNCTG	1 cut(s)	1088
CfoI	GCGC	1 cut(s)	2230
Cfr13I	GGNCC	1 cut(s)	951
Cfr42I	CCGCGG	1 cut(s)	324
CseI	GACGC	2 cut(s)	10, 104
Csp6I	GTAC	5 cut(s)	773, 1286, 1585, 2118, 2248
CviAII	CATG	7 cut(s)	106, 1049, 1179, 1415, 1471, 2003, 2392
CviQI	GTAC	5 cut(s)	773, 1286, 1585, 2118, 2248
DpnI	GATC	7 cut(s)	221, 252, 390, 1218, 1728, 1734, 1740
DpnII	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
DraI	TTTAAA	1 cut(s)	1573
DraIII	CACNNNGTG	1 cut(s)	595
EaeI	YGGCCR	2 cut(s)	597, 1975
Eam1104I	CTCTTC	7 cut(s)	293, 353, 497, 525, 687, 747, 882
EarI	CTCTTC	7 cut(s)	293, 353, 497, 525, 687, 747, 882
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	2 cut(s)	1559, 2309
Eco130I	CCWWGG	7 cut(s)	114, 425, 600, 954, 1854, 2292, 2376
Eco24I	GRGCYC	3 cut(s)	1561, 1627, 2311
Eco31I	GGTCTC	1 cut(s)	2282
Eco47I	GGWCC	1 cut(s)	951
Eco47III	AGCGCT	1 cut(s)	2229
Eco53kI	GAGCTC	2 cut(s)	1559, 2309
Eco88I	CYCGRG	2 cut(s)	254, 1560
Eco91I	GGTNACC	1 cut(s)	2145
EcoICRI	GAGCTC	2 cut(s)	1559, 2309
EcoO65I	GGTNACC	1 cut(s)	2145
EcoRII	CCWGG	3 cut(s)	1081, 1627, 2351
EcoT14I	CCWWGG	7 cut(s)	114, 425, 600, 954, 1854, 2292, 2376
EcoT38I	GRGCYC	3 cut(s)	1561, 1627, 2311
ErhI	CCWWGG	7 cut(s)	114, 425, 600, 954, 1854, 2292, 2376
Esp3I	CGTCTC	1 cut(s)	1083
FaeI	CATG	7 cut(s)	109, 1052, 1182, 1418, 1474, 2006, 2395
FalI	AAGNNNNNCTT	4 cut(s)	909, 941, 1853, 1885
FaqI	GGGAC	1 cut(s)	2175
FatI	CATG	7 cut(s)	105, 1048, 1178, 1414, 1470, 2002, 2391
FauI	CCCGC	1 cut(s)	1272
FauNDI	CATATG	2 cut(s)	1441, 2122
FbaI	TGATCA	1 cut(s)	1216
FblI	GTMKAC	2 cut(s)	45, 277
Fnu4HI	GCNGC	8 cut(s)	130, 318, 321, 324, 422, 1380, 1566, 2319
FriOI	GRGCYC	3 cut(s)	1561, 1627, 2311
Fsp4HI	GCNGC	8 cut(s)	130, 318, 321, 324, 422, 1380, 1566, 2319
FspBI	CTAG	4 cut(s)	426, 834, 1161, 1463
GlaI	GCGC	1 cut(s)	2229
GluI	GCNGC	8 cut(s)	130, 318, 321, 324, 422, 1380, 1566, 2319
GsaI	CCCAGC	1 cut(s)	1386
GsuI	CTGGAG	4 cut(s)	1065, 1575, 1704, 2288
HaeII	RGCGCY	1 cut(s)	2231
HaeIII	GGCC	4 cut(s)	179, 268, 599, 1977
HapII	CCGG	3 cut(s)	61, 217, 340
HgaI	GACGC	2 cut(s)	10, 104
HhaI	GCGC	1 cut(s)	2230
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	7 cut(s)	109, 1052, 1182, 1418, 1474, 2006, 2395
Hin6I	GCGC	1 cut(s)	2228
HinP1I	GCGC	1 cut(s)	2228
HincII	GTYRAC	2 cut(s)	46, 278
HindII	GTYRAC	2 cut(s)	46, 278
HindIII	AAGCTT	3 cut(s)	395, 1107, 2137
HpaII	CCGG	3 cut(s)	61, 217, 340
HphI	GGTGA	6 cut(s)	427, 722, 1252, 1406, 1870, 2297
Hpy166II	GTNNAC	5 cut(s)	46, 278, 1460, 1955, 2328
Hpy8I	GTNNAC	5 cut(s)	46, 278, 1460, 1955, 2328
Hpy99I	CGWCG	4 cut(s)	13, 47, 50, 547
HpyCH4III	ACNGT	6 cut(s)	460, 680, 1022, 1077, 2109, 2252
HpyCH4IV	ACGT	3 cut(s)	42, 1288, 2019
HpySE526I	ACGT	3 cut(s)	42, 1288, 2019
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	7 cut(s)	109, 1052, 1182, 1418, 1474, 2006, 2395
HspAI	GCGC	1 cut(s)	2228
Ksp22I	TGATCA	1 cut(s)	1216
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	6 cut(s)	63, 64, 161, 342, 1556, 1630
Lsp1109I	GCAGC	4 cut(s)	304, 433, 1366, 2305
LweI	GCATC	5 cut(s)	408, 712, 901, 991, 1160
MaeI	CTAG	4 cut(s)	426, 834, 1161, 1463
MaeII	ACGT	3 cut(s)	42, 1288, 2019
MaeIII	GTNAC	4 cut(s)	88, 674, 1755, 2145
MalI	GATC	7 cut(s)	221, 252, 390, 1218, 1728, 1734, 1740
MbiI	CCGCTC	2 cut(s)	156, 345
MboI	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	4 cut(s)	1561, 1627, 1853, 2311
MlsI	TGGCCA	2 cut(s)	599, 1977
MluNI	TGGCCA	2 cut(s)	599, 1977
MlyI	GAGTC	3 cut(s)	283, 1763, 1913
MmeI	TCCRAC	3 cut(s)	639, 864, 1538
Mox20I	TGGCCA	2 cut(s)	599, 1977
MscI	TGGCCA	2 cut(s)	599, 1977
MseI	TTAA	6 cut(s)	399, 744, 1122, 1572, 2133, 2303
MslI	CAYNNNNRTG	3 cut(s)	1177, 1856, 2001
Msp20I	TGGCCA	2 cut(s)	599, 1977
MspA1I	CMGCKG	3 cut(s)	323, 1211, 1658
MspCI	CTTAAG	2 cut(s)	398, 1121
MspI	CCGG	3 cut(s)	61, 217, 340
MspR9I	CCNGG	4 cut(s)	62, 1083, 1629, 2353
Mva1269I	GAATGC	1 cut(s)	1678
MvaI	CCWGG	3 cut(s)	1083, 1629, 2353
MvnI	CGCG	1 cut(s)	323
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	2 cut(s)	1441, 2122
NdeII	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
NlaIII	CATG	7 cut(s)	109, 1052, 1182, 1418, 1474, 2006, 2395
NlaIV	GGNNCC	3 cut(s)	152, 252, 1626
NmuCI	GTSAC	3 cut(s)	88, 674, 1755
NspI	RCATGY	2 cut(s)	1052, 1474
NspV	TTCGAA	1 cut(s)	850
OliI	CACNNNNGTG	1 cut(s)	1856
PaeR7I	CTCGAG	1 cut(s)	1560
PaqCI	CACCTGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	1470
PciSI	GCTCTTC	1 cut(s)	882
PctI	GAATGC	1 cut(s)	1678
PfeI	GAWTC	7 cut(s)	259, 584, 662, 946, 989, 1361, 1885
PfoI	TCCNGGA	2 cut(s)	60, 2351
PkrI	GCNGC	8 cut(s)	131, 319, 322, 325, 423, 1381, 1567, 2320
PleI	GAGTC	3 cut(s)	282, 1762, 1913
PpsI	GAGTC	3 cut(s)	282, 1762, 1913
Ppu21I	YACGTR	1 cut(s)	1289
PscI	ACATGT	1 cut(s)	1470
Psp124BI	GAGCTC	2 cut(s)	1561, 2311
Psp6I	CCWGG	3 cut(s)	1081, 1627, 2351
PspEI	GGTNACC	1 cut(s)	2145
PspFI	CCCAGC	1 cut(s)	1382
PspGI	CCWGG	3 cut(s)	1081, 1627, 2351
PspN4I	GGNNCC	3 cut(s)	152, 252, 1626
PspPI	GGNCC	1 cut(s)	951
PspXI	VCTCGAGB	1 cut(s)	1560
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	2 cut(s)	1211, 1658
RsaI	GTAC	5 cut(s)	774, 1287, 1586, 2119, 2249
RsaNI	GTAC	5 cut(s)	773, 1286, 1585, 2118, 2248
RseI	CAYNNNNRTG	3 cut(s)	1177, 1856, 2001
SacI	GAGCTC	2 cut(s)	1561, 2311
SacII	CCGCGG	1 cut(s)	324
SalI	GTCGAC	2 cut(s)	44, 276
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	6 cut(s)	399, 744, 1122, 1572, 2133, 2303
SatI	GCNGC	8 cut(s)	130, 318, 321, 324, 422, 1380, 1566, 2319
Sau3AI	GATC	7 cut(s)	219, 250, 388, 1216, 1726, 1732, 1738
Sau96I	GGNCC	1 cut(s)	951
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	283, 1763, 1913
ScrFI	CCNGG	4 cut(s)	62, 1083, 1629, 2353
SduI	GDGCHC	4 cut(s)	1561, 1627, 1853, 2311
SfaNI	GCATC	5 cut(s)	408, 712, 901, 991, 1160
Sfr274I	CTCGAG	1 cut(s)	1560
Sfr303I	CCGCGG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	850
SgrBI	CCGCGG	1 cut(s)	324
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	951
SlaI	CTCGAG	1 cut(s)	1560
SmiMI	CAYNNNNRTG	3 cut(s)	1177, 1856, 2001
SmlI	CTYRAG	4 cut(s)	398, 1121, 1296, 1560
SmoI	CTYRAG	4 cut(s)	398, 1121, 1296, 1560
SpeI	ACTAGT	1 cut(s)	833
SspI	AATATT	1 cut(s)	1845
SspMI	CTAG	4 cut(s)	426, 834, 1161, 1463
SstI	GAGCTC	2 cut(s)	1561, 2311
StyD4I	CCNGG	4 cut(s)	60, 1081, 1627, 2351
StyI	CCWWGG	7 cut(s)	114, 425, 600, 954, 1854, 2292, 2376
TaaI	ACNGT	6 cut(s)	460, 680, 1022, 1077, 2109, 2252
TaiI	ACGT	3 cut(s)	45, 1291, 2022
TaqI	TCGA	9 cut(s)	11, 45, 277, 437, 449, 850, 1561, 2104, 2311
TaqII	GACCGA	1 cut(s)	939
TatI	WGTACW	2 cut(s)	772, 2117
TauI	GCSGC	4 cut(s)	132, 323, 326, 1568
TfiI	GAWTC	7 cut(s)	259, 584, 662, 946, 989, 1361, 1885
Tru1I	TTAA	6 cut(s)	399, 744, 1122, 1572, 2133, 2303
Tru9I	TTAA	6 cut(s)	399, 744, 1122, 1572, 2133, 2303
TscAI	CASTG	4 cut(s)	463, 685, 1207, 1710
TseFI	GTSAC	3 cut(s)	88, 674, 1755
TseI	GCWGC	4 cut(s)	317, 421, 1379, 2318
Tsp45I	GTSAC	3 cut(s)	88, 674, 1755
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	4 cut(s)	463, 685, 1207, 1710
Vha464I	CTTAAG	2 cut(s)	398, 1121
VpaK11BI	GGWCC	1 cut(s)	951
XapI	RAATTY	8 cut(s)	28, 853, 902, 1372, 1481, 1777, 1913, 2396
XceI	RCATGY	2 cut(s)	1052, 1474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XhoI	CTCGAG	1 cut(s)	1560
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	45, 277
XspI	CTAG	4 cut(s)	426, 834, 1161, 1463
ZrmI	AGTACT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.