Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

14074937 .. 14080828

Gene Structure 5892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG139800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGAAACCTTCAGTACTGCATTTCCAACAACTGTTAACAGGAATTTTTCTATGCGAACTTCGCCGCCGCCTTCGATTCATTTTTGGTTCTAAACAATCACACACACCTGCAGCAATGTCGTCGAGGATTTGCGTCAAGAATTTGCCGAAACACGTCGACGATAAGAAGCTCCGGGAGCTTTTCTCCGAGAAAGGAGAAGTCACGGACGCCAAGCTCATGCGAACCAAGGAAGGCAAGAGCCGCCAGTTCGCTTTCATAGGGTTCCGCTCCGAGCTTCAAGCTCAGGAGGCCATCAAATACTTCAATAAAACTTTTATTGATACTTACCGGATCAGTTGCGAGCTTGCTCGGAAAGTTGGGGATCCCGAGATTCCGAGGCCGTGGAGTCGCCATACTAAGGAGAAAGAGAAGGAGAAGGAGAAGAGAGAGAGTGAAGGTGCTGCCGCGGCGGAGGCGAAAAGCCGGAGCGGAGTGGGAGGGAAGAGGAGTGAGGATGAGGATGAGATTGATGATCCTAAGCTTAAGGAGTTTTTGCAGGTGATGCAGCCTAGGGCTAAGTCGAAATTGTGGTCGAATGACACTGTGATTGCTAATGTTGAGGGGAAAATTGGGAAAGGAGAGAAGAAGAGAGAGCAGAGGAAGAAGAAGGGGAATGAAGAGAGTTTGGTGACGATGGATGTGGAGGTAGAGGAGGAAGTGGAGAAGGATGATTCACACAATGTGGCCAAGGATAATGTGGTTTCGGATATGGATTACTTCAAGAGTAGAGTGAAGAAGGATTGGTCGGATTCTGAAAGTAGTGACAGTGATGATGAGGAAGAGGAGGAGGAAGGTGAAGAATTAGATGCTAAGGAAGAAGCTGAGGTTAATGAAGAAGAGGCAGGAGAGGAAAAAGTACTTGCACAGAGTAATCCTTCGTCCAGTTTGAAAGATGAGAAAGATGAAATGCTTGATACTAGTCGGCTTTTTATTCGAAATTTGCCATTTACAGCAACAGAGGACGAGTTGGAAGAGCATTTTTGCAAATTCGGGGATGCACAAGTTCATCTTGTTGTTGATAAAGAAATGAATCGGTCCAAGGGAATTGCTTATGTTCTTTACTCGCATCCAGAATCGGCACAAAGGGCATTAGAAGAATTAGACGGTTCAATTTTTCAAGGAAGATTGTTGCATGTTATGCCAGCAAAACAAAAAAACCCGTCTCCAGGGGCTGATGATTCGGCAAACCAAGCTTCAAAGTCTCTTAAGCAACAAAGGGAGGAGAAGAGGAAAGCATCCGAAGCTAGTGGAGATACACGAGCATGGAATAGTTTGTTTATACGCACTGAGACAGCTGTTGATCACTTAGCTCGGAAGTTTGGGGTGAGCAAGAGTGATTTTCTTGACCCGCAAGCTGATGATGTCGCTGTACGTGTTGCTCAAGCAGAGACACAAGTGATTGCACAGACAAAAAAGGCTCTTACAAATGCTGGTGTAAATGTAGAATCTTTAGAGAATTTTGCTGCTGGGAAAGGTGGTGATATGAAAAGAAGCAACCATGTTATACTTGTGAAAAACTTGCCATATGGTTCTTCTGATAGTGAACTAGGAAACATGTTTGGAAAATTTGGGAGTTTTGAAAAAATCATTATGCCTCCGACAAAGACATTGGCGTTGGTTGTCTTTTTTGAACCTTCTGGAGCTCGAGCAGCTTTTAAAGGTTTGGCGTACAAGAAATACAAGGATGTTCCTCTATATTTGGAATGGGCTCCTGGCAATGTTCTTAGTCCAAGTTCAACAGCTGAGAGCAATGAAAAGAAGCATTCTGCTGTTGCTGAACATAAGCCACTGGTGGAAGGAACTCCAGATGATCTTGATCTTGATCCTGATAGAGTTGAGTCACGAACTCTATATGTCAAGAATTTGAACTTCAAGACATCTGACGAGAGCTTGAAGAAGCATTTTGAACAAGTGAAGGAGGGAAGACTATTGAGCGCCAAGGTGAAGAAACACTTGAAAAAAGGGAAGAATCTTTCAATGGGATTTGGTTTTGTAGAATTTGACTCTGTGGAGACAGCCACAGAGGTTTGCAAGAGTTTACAGGGAACAATTTTGGATGGCCACCAACTTATTTTGCAACATTGTCATGCCAAGCAAGATGACGTGCCAAAAAAAGTTGTGAAGGACAAAAGTTCAACAAAAATACTTGTAAAAAATGTAGCCTTTGAGGCTACAAAGAAAGAGCTTCGACAGTTGTTTAGTACATATGGCGAGATTAAAAGCTTGCGGTTACCAAACAGATTGGGACAGCATAGAGGCTTTGCATTTGTGGAGTTTGCCACAAAGCAAGAGGCAGAAAATGCCATCCAAGCGCTTGCAAGCACACATCTGTACGGTCGCCATCTGGTTCTGGAGAGAGCAAAGGAAGGTGAGACCTTGGAAGATTTAAGAGCTCGAATAGCTGCTCAGTTCACAGATGACCAAAATACTATTTCCAGGAAAAGGAAGGCTGTCGCAACCTTGGATGAAGATAACATGAAATTTGATATGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

845

Amino Acids

95.22

Weight (kDa)

6.25

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	43 - 111	5.1e-15	RNA recognition motif
RRM_1	PF00076	322 - 390	2.1e-16	RNA recognition motif
RRM_1	PF00076	515 - 575	1.9e-07	RNA recognition motif
RRM_1	PF00076	630 - 703	6.7e-13	RNA recognition motif
RRM_1	PF00076	728 - 795	1.5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	115, 526
Acc36I	ACCTGC	2 cut(s)	115, 526
AccBSI	CCGCTC	2 cut(s)	267, 468
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	446
AclWI	GGATC	5 cut(s)	338, 356, 369, 506, 1856
AcoI	YGGCCR	2 cut(s)	723, 2098
AcsI	RAATTY	9 cut(s)	42, 139, 976, 1025, 1495, 1604, 1900, 2036, 2519
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	6 cut(s)	15, 897, 1410, 1709, 2242, 2372
AfeI	AGCGCT	1 cut(s)	2352
AfiI	CCNNNNNNNGG	3 cut(s)	397, 1205, 2481
AflII	CTTAAG	2 cut(s)	521, 1244
AflIII	ACRYGT	3 cut(s)	151, 1411, 1593
AhlI	ACTAGT	1 cut(s)	956
AjiI	CACGTC	2 cut(s)	154, 2143
AjnI	CCWGG	3 cut(s)	1204, 1750, 2474
Alw21I	GWGCWC	2 cut(s)	1684, 2434
Alw26I	GTCTC	6 cut(s)	1206, 1245, 1322, 1421, 2045, 2405
AlwI	GGATC	5 cut(s)	338, 356, 369, 506, 1856
AlwNI	CAGNNNCTG	1 cut(s)	1211
Ama87I	CYCGRG	2 cut(s)	365, 1683
Aor51HI	AGCGCT	1 cut(s)	2352
AoxI	GGCC	4 cut(s)	288, 377, 723, 2098
ApeKI	GCWGC	6 cut(s)	110, 440, 544, 1502, 1688, 2441
ApoI	RAATTY	9 cut(s)	42, 139, 976, 1025, 1495, 1604, 1900, 2036, 2519
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AspA2I	CCTAGG	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	1976, 2353
AspS9I	GGNCC	1 cut(s)	1074
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	7 cut(s)	550, 679, 845, 1375, 1529, 1993, 2420
AsuII	TTCGAA	1 cut(s)	973
AvaI	CYCGRG	2 cut(s)	365, 1683
AvaII	GGWCC	1 cut(s)	1074
AvrII	CCTAGG	1 cut(s)	548
BalI	TGGCCA	2 cut(s)	725, 2100
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	3 cut(s)	1684, 1750, 2434
BauI	CACGAG	1 cut(s)	1296
BbsI	GAAGAC	1 cut(s)	1969
Bbv12I	GWGCWC	2 cut(s)	1684, 2434
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	6 cut(s)	122, 427, 556, 1489, 1700, 2428
BccI	CCATC	5 cut(s)	299, 667, 2090, 2351, 2388
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	4 cut(s)	99, 102, 133, 136
BciT130I	CCWGG	3 cut(s)	1206, 1752, 2476
BclI	TGATCA	1 cut(s)	1339
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	6 cut(s)	1206, 1245, 1322, 1421, 2045, 2405
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	4 cut(s)	549, 957, 1284, 1586
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	2 cut(s)	1977, 2354
BfrI	CTTAAG	2 cut(s)	521, 1244
BfuAI	ACCTGC	2 cut(s)	115, 526
BglI	GCCNNNNNGGC	1 cut(s)	2207
BlnI	CCTAGG	1 cut(s)	548
BmcAI	AGTACT	2 cut(s)	15, 897
Bme1390I	CCNGG	4 cut(s)	173, 1206, 1752, 2476
Bme18I	GGWCC	1 cut(s)	1074
BmeT110I	CYCGRG	2 cut(s)	365, 1683
BmgBI	CACGTC	2 cut(s)	154, 2143
BmgT120I	GGNCC	1 cut(s)	1074
BmiI	GGNNCC	3 cut(s)	263, 363, 1749
BmrFI	CCNGG	4 cut(s)	173, 1206, 1752, 2476
BmsI	GCATC	5 cut(s)	531, 835, 1024, 1114, 1283
BpiI	GAAGAC	1 cut(s)	1969
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	4 cut(s)	1188, 1698, 1827, 2411
Bpu10I	CCTNAGC	4 cut(s)	282, 516, 849, 861
Bpu14I	TTCGAA	1 cut(s)	973
BpuEI	CTTGAG	1 cut(s)	1404
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	1412
BsaBI	GATNNNNATC	2 cut(s)	1854, 1860
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	2405
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 1205, 2481
Bse1I	ACTGG	3 cut(s)	244, 921, 1833
Bse3DI	GCAATG	3 cut(s)	120, 1762, 1795
Bse8I	GATNNNNATC	2 cut(s)	1854, 1860
BseBI	CCWGG	3 cut(s)	1206, 1752, 2476
BseJI	GATNNNNATC	2 cut(s)	1854, 1860
BseLI	CCNNNNNNNGG	3 cut(s)	397, 1205, 2481
BseMI	GCAATG	3 cut(s)	120, 1762, 1795
BseMII	CTCAG	5 cut(s)	296, 852, 1317, 1773, 2459
BseNI	ACTGG	3 cut(s)	244, 921, 1833
BseRI	GAGGAG	5 cut(s)	499, 704, 836, 839, 1274
BseXI	GCAGC	6 cut(s)	122, 427, 556, 1489, 1700, 2428
BseYI	CCCAGC	1 cut(s)	1505
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	2377
BshFI	GGCC	4 cut(s)	290, 379, 725, 2100
BsiEI	CGRYCG	1 cut(s)	2377
BsiHKAI	GWGCWC	2 cut(s)	1684, 2434
BsiHKCI	CYCGRG	2 cut(s)	365, 1683
BsiSI	CCGG	3 cut(s)	172, 328, 463
BslFI	GGGAC	1 cut(s)	2298
BslI	CCNNNNNNNGG	3 cut(s)	397, 1205, 2481
BsmAI	GTCTC	6 cut(s)	1206, 1245, 1322, 1421, 2045, 2405
BsmBI	CGTCTC	1 cut(s)	1206
BsmFI	GGGAC	1 cut(s)	2298
BsmI	GAATGC	1 cut(s)	1801
BsnI	GGCC	4 cut(s)	290, 379, 725, 2100
Bso31I	GGTCTC	1 cut(s)	2405
BsoBI	CYCGRG	2 cut(s)	365, 1683
Bsp119I	TTCGAA	1 cut(s)	973
Bsp1286I	GDGCHC	3 cut(s)	1684, 1750, 2434
Bsp143I	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
BspANI	GGCC	4 cut(s)	290, 379, 725, 2100
BspCNI	CTCAG	5 cut(s)	295, 853, 1318, 1774, 2458
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	3 cut(s)	263, 363, 1749
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	115, 526
BspPI	GGATC	5 cut(s)	338, 356, 369, 506, 1856
BspQI	GCTCTTC	1 cut(s)	1005
BspT104I	TTCGAA	1 cut(s)	973
BspTI	CTTAAG	2 cut(s)	521, 1244
BspTNI	GGTCTC	1 cut(s)	2405
BsrBI	CCGCTC	2 cut(s)	267, 468
BsrDI	GCAATG	3 cut(s)	120, 1762, 1795
BsrI	ACTGG	3 cut(s)	244, 921, 1833
BssMI	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	1296
BssT1I	CCWWGG	7 cut(s)	225, 548, 726, 1077, 1977, 2415, 2499
Bst2BI	CACGAG	1 cut(s)	1296
Bst2UI	CCWGG	3 cut(s)	1206, 1752, 2476
Bst4CI	ACNGT	6 cut(s)	33, 583, 806, 1145, 2232, 2375
Bst6I	CTCTTC	8 cut(s)	416, 476, 620, 651, 813, 870, 1005, 1259
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	2 cut(s)	521, 1244
BstAPI	GCANNNNNTGC	3 cut(s)	541, 1177, 2339
BstBAI	YACGTR	1 cut(s)	1412
BstBI	TTCGAA	1 cut(s)	973
BstC8I	GCNNGC	7 cut(s)	341, 345, 1182, 1392, 2264, 2355, 2359
BstDSI	CCRYGG	2 cut(s)	380, 444
BstEII	GGTNACC	1 cut(s)	2268
BstFNI	CGCG	1 cut(s)	446
BstH2I	RGCGCY	2 cut(s)	1977, 2354
BstHHI	GCGC	2 cut(s)	1976, 2353
BstKTI	GATC	7 cut(s)	333, 364, 514, 1342, 1852, 1858, 1864
BstMAI	GTCTC	6 cut(s)	1206, 1245, 1322, 1421, 2045, 2405
BstMBI	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
BstMCI	CGRYCG	1 cut(s)	2377
BstNI	CCWGG	3 cut(s)	1206, 1752, 2476
BstNSI	RCATGY	2 cut(s)	1175, 1597
BstPI	GGTNACC	1 cut(s)	2268
BstSCI	CCNGG	4 cut(s)	171, 1204, 1750, 2474
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	6 cut(s)	122, 427, 556, 1489, 1700, 2428
BstV2I	GAAGAC	1 cut(s)	1969
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	290, 379, 725, 2100
BtgI	CCRYGG	2 cut(s)	380, 444
BtrI	CACGTC	2 cut(s)	154, 2143
BtsIMutI	CAGTG	4 cut(s)	579, 811, 1323, 1826
BveI	ACCTGC	2 cut(s)	115, 526
Cac8I	GCNNGC	7 cut(s)	341, 345, 1182, 1392, 2264, 2355, 2359
CaiI	CAGNNNCTG	1 cut(s)	1211
CfoI	GCGC	2 cut(s)	1976, 2353
Cfr13I	GGNCC	1 cut(s)	1074
Cfr42I	CCGCGG	1 cut(s)	447
CseI	GACGC	2 cut(s)	121, 215
Csp6I	GTAC	6 cut(s)	14, 896, 1409, 1708, 2241, 2371
CviAII	CATG	7 cut(s)	217, 1172, 1302, 1538, 1594, 2126, 2515
CviQI	GTAC	6 cut(s)	14, 896, 1409, 1708, 2241, 2371
DpnI	GATC	7 cut(s)	332, 363, 513, 1341, 1851, 1857, 1863
DpnII	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
DraI	TTTAAA	1 cut(s)	1696
DraIII	CACNNNGTG	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	723, 2098
Eam1104I	CTCTTC	8 cut(s)	416, 476, 620, 651, 813, 870, 1005, 1259
EarI	CTCTTC	8 cut(s)	416, 476, 620, 651, 813, 870, 1005, 1259
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	2 cut(s)	1682, 2432
Eco130I	CCWWGG	7 cut(s)	225, 548, 726, 1077, 1977, 2415, 2499
Eco24I	GRGCYC	3 cut(s)	1684, 1750, 2434
Eco31I	GGTCTC	1 cut(s)	2405
Eco47I	GGWCC	1 cut(s)	1074
Eco47III	AGCGCT	1 cut(s)	2352
Eco53kI	GAGCTC	2 cut(s)	1682, 2432
Eco88I	CYCGRG	2 cut(s)	365, 1683
Eco91I	GGTNACC	1 cut(s)	2268
EcoICRI	GAGCTC	2 cut(s)	1682, 2432
EcoO65I	GGTNACC	1 cut(s)	2268
EcoRII	CCWGG	3 cut(s)	1204, 1750, 2474
EcoT14I	CCWWGG	7 cut(s)	225, 548, 726, 1077, 1977, 2415, 2499
EcoT38I	GRGCYC	3 cut(s)	1684, 1750, 2434
ErhI	CCWWGG	7 cut(s)	225, 548, 726, 1077, 1977, 2415, 2499
Esp3I	CGTCTC	1 cut(s)	1206
FaeI	CATG	7 cut(s)	220, 1175, 1305, 1541, 1597, 2129, 2518
FalI	AAGNNNNNCTT	4 cut(s)	1032, 1064, 1976, 2008
FaqI	GGGAC	1 cut(s)	2298
FatI	CATG	7 cut(s)	216, 1171, 1301, 1537, 1593, 2125, 2514
FauI	CCCGC	1 cut(s)	1395
FauNDI	CATATG	2 cut(s)	1564, 2245
FbaI	TGATCA	1 cut(s)	1339
FblI	GTMKAC	1 cut(s)	156
FriOI	GRGCYC	3 cut(s)	1684, 1750, 2434
FspBI	CTAG	4 cut(s)	549, 957, 1284, 1586
GlaI	GCGC	2 cut(s)	1975, 2352
GsaI	CCCAGC	1 cut(s)	1509
GsuI	CTGGAG	4 cut(s)	1188, 1698, 1827, 2411
HaeII	RGCGCY	2 cut(s)	1977, 2354
HaeIII	GGCC	4 cut(s)	290, 379, 725, 2100
HapII	CCGG	3 cut(s)	172, 328, 463
HgaI	GACGC	2 cut(s)	121, 215
HhaI	GCGC	2 cut(s)	1976, 2353
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	7 cut(s)	220, 1175, 1305, 1541, 1597, 2129, 2518
Hin6I	GCGC	2 cut(s)	1974, 2351
HinP1I	GCGC	2 cut(s)	1974, 2351
HincII	GTYRAC	2 cut(s)	36, 157
HindII	GTYRAC	2 cut(s)	36, 157
HindIII	AAGCTT	3 cut(s)	518, 1230, 2260
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	172, 328, 463
HphI	GGTGA	7 cut(s)	550, 679, 845, 1375, 1529, 1993, 2420
Hpy166II	GTNNAC	5 cut(s)	36, 157, 1583, 2078, 2451
Hpy8I	GTNNAC	5 cut(s)	36, 157, 1583, 2078, 2451
Hpy99I	CGWCG	3 cut(s)	124, 158, 161
HpyCH4III	ACNGT	6 cut(s)	33, 583, 806, 1145, 2232, 2375
HpyCH4IV	ACGT	3 cut(s)	153, 1411, 2142
HpySE526I	ACGT	3 cut(s)	153, 1411, 2142
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	7 cut(s)	220, 1175, 1305, 1541, 1597, 2129, 2518
HspAI	GCGC	2 cut(s)	1974, 2351
Ksp22I	TGATCA	1 cut(s)	1339
KspAI	GTTAAC	1 cut(s)	36
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	6 cut(s)	174, 175, 272, 465, 1679, 1753
Lsp1109I	GCAGC	6 cut(s)	122, 427, 556, 1489, 1700, 2428
LweI	GCATC	5 cut(s)	531, 835, 1024, 1114, 1283
MaeI	CTAG	4 cut(s)	549, 957, 1284, 1586
MaeII	ACGT	3 cut(s)	153, 1411, 2142
MaeIII	GTNAC	5 cut(s)	199, 667, 800, 1878, 2268
MalI	GATC	7 cut(s)	332, 363, 513, 1341, 1851, 1857, 1863
MbiI	CCGCTC	2 cut(s)	267, 468
MboI	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	1684, 1750, 2434
MlsI	TGGCCA	2 cut(s)	725, 2100
MluNI	TGGCCA	2 cut(s)	725, 2100
MlyI	GAGTC	3 cut(s)	394, 1886, 2036
MmeI	TCCRAC	4 cut(s)	49, 765, 987, 1661
Mox20I	TGGCCA	2 cut(s)	725, 2100
MscI	TGGCCA	2 cut(s)	725, 2100
MseI	TTAA	7 cut(s)	35, 522, 867, 1245, 1695, 2256, 2426
MslI	CAYNNNNRTG	2 cut(s)	1300, 2124
Msp20I	TGGCCA	2 cut(s)	725, 2100
MspA1I	CMGCKG	3 cut(s)	446, 1334, 1781
MspCI	CTTAAG	2 cut(s)	521, 1244
MspI	CCGG	3 cut(s)	172, 328, 463
MspR9I	CCNGG	4 cut(s)	173, 1206, 1752, 2476
Mva1269I	GAATGC	1 cut(s)	1801
MvaI	CCWGG	3 cut(s)	1206, 1752, 2476
MvnI	CGCG	1 cut(s)	446
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	2 cut(s)	1564, 2245
NdeII	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
NlaIII	CATG	7 cut(s)	220, 1175, 1305, 1541, 1597, 2129, 2518
NlaIV	GGNNCC	3 cut(s)	263, 363, 1749
NmuCI	GTSAC	4 cut(s)	199, 667, 800, 1878
NspI	RCATGY	2 cut(s)	1175, 1597
NspV	TTCGAA	1 cut(s)	973
PaeR7I	CTCGAG	1 cut(s)	1683
PaqCI	CACCTGC	2 cut(s)	115, 526
PciI	ACATGT	1 cut(s)	1593
PciSI	GCTCTTC	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	1801
PfeI	GAWTC	9 cut(s)	75, 370, 710, 788, 1069, 1112, 1217, 1484, 2008
PfoI	TCCNGGA	2 cut(s)	171, 2474
PleI	GAGTC	3 cut(s)	393, 1885, 2036
PpsI	GAGTC	3 cut(s)	393, 1885, 2036
Ppu21I	YACGTR	1 cut(s)	1412
PscI	ACATGT	1 cut(s)	1593
Psp124BI	GAGCTC	2 cut(s)	1684, 2434
Psp6I	CCWGG	3 cut(s)	1204, 1750, 2474
PspEI	GGTNACC	1 cut(s)	2268
PspFI	CCCAGC	1 cut(s)	1505
PspGI	CCWGG	3 cut(s)	1204, 1750, 2474
PspN4I	GGNNCC	3 cut(s)	263, 363, 1749
PspPI	GGNCC	1 cut(s)	1074
PspXI	VCTCGAGB	1 cut(s)	1683
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	1211
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	2 cut(s)	1334, 1781
RsaI	GTAC	6 cut(s)	15, 897, 1410, 1709, 2242, 2372
RsaNI	GTAC	6 cut(s)	14, 896, 1409, 1708, 2241, 2371
RseI	CAYNNNNRTG	2 cut(s)	1300, 2124
SacI	GAGCTC	2 cut(s)	1684, 2434
SacII	CCGCGG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	7 cut(s)	35, 522, 867, 1245, 1695, 2256, 2426
Sau3AI	GATC	7 cut(s)	330, 361, 511, 1339, 1849, 1855, 1861
Sau96I	GGNCC	1 cut(s)	1074
ScaI	AGTACT	2 cut(s)	15, 897
SchI	GAGTC	3 cut(s)	394, 1886, 2036
ScrFI	CCNGG	4 cut(s)	173, 1206, 1752, 2476
SduI	GDGCHC	3 cut(s)	1684, 1750, 2434
SfaNI	GCATC	5 cut(s)	531, 835, 1024, 1114, 1283
SfcI	CTRYAG	1 cut(s)	108
Sfr274I	CTCGAG	1 cut(s)	1683
Sfr303I	CCGCGG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	973
SgrBI	CCGCGG	1 cut(s)	447
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	1074
SlaI	CTCGAG	1 cut(s)	1683
SmiMI	CAYNNNNRTG	2 cut(s)	1300, 2124
SmlI	CTYRAG	4 cut(s)	521, 1244, 1419, 1683
SmoI	CTYRAG	4 cut(s)	521, 1244, 1419, 1683
SpeI	ACTAGT	1 cut(s)	956
SspMI	CTAG	4 cut(s)	549, 957, 1284, 1586
SstI	GAGCTC	2 cut(s)	1684, 2434
StyD4I	CCNGG	4 cut(s)	171, 1204, 1750, 2474
StyI	CCWWGG	7 cut(s)	225, 548, 726, 1077, 1977, 2415, 2499
TaaI	ACNGT	6 cut(s)	33, 583, 806, 1145, 2232, 2375
TaiI	ACGT	3 cut(s)	156, 1414, 2145
TaqI	TCGA	9 cut(s)	73, 122, 156, 560, 572, 973, 1684, 2227, 2434
TaqII	GACCGA	1 cut(s)	1062
TatI	WGTACW	3 cut(s)	13, 895, 2240
TauI	GCSGC	5 cut(s)	66, 69, 243, 446, 449
TfiI	GAWTC	9 cut(s)	75, 370, 710, 788, 1069, 1112, 1217, 1484, 2008
Tru1I	TTAA	7 cut(s)	35, 522, 867, 1245, 1695, 2256, 2426
Tru9I	TTAA	7 cut(s)	35, 522, 867, 1245, 1695, 2256, 2426
TscAI	CASTG	4 cut(s)	586, 811, 1330, 1833
TseFI	GTSAC	4 cut(s)	199, 667, 800, 1878
TseI	GCWGC	6 cut(s)	110, 440, 544, 1502, 1688, 2441
Tsp45I	GTSAC	4 cut(s)	199, 667, 800, 1878
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	4 cut(s)	586, 811, 1330, 1833
Vha464I	CTTAAG	2 cut(s)	521, 1244
VpaK11BI	GGWCC	1 cut(s)	1074
XapI	RAATTY	9 cut(s)	42, 139, 976, 1025, 1495, 1604, 1900, 2036, 2519
XceI	RCATGY	2 cut(s)	1175, 1597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	1683
XmaJI	CCTAGG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	4 cut(s)	549, 957, 1284, 1586
ZrmI	AGTACT	2 cut(s)	15, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.