Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

95125092 .. 95131150

Gene Structure 6059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAAAGAAGCAACCATGTTATACTTGTGAAAAACTTGCCATATGGTTCTTCTGATAGTGAACTAGGAAACGTGTTTGGAAAATTTGGGAGTTTTGAAAAAATCATTATGCCTCCGACAAAGACATTGGCGTTGGTTGTTTTTTTTGAACCTTCTGGAGCTCGAGCAGCTTTTAAAGGTTTGGCATACAAGAAATACAAGGATGTTCCTCTATATTTGGAATGGGCTCCTGGCAATGTTCTTAGTCCAAGTTCAACAGCTGAGAGCAATGACAAGAAGCATTCTGCTGTTGCTGAACATAAGCCACTGGTGGAAGGAACTCCAGATGATCTTGATCTTGATCCTGATAGAGTTGAGTCACGAACGCTATATGTCAAGAATTTGAACTTCAAGACATCTGACGAGAGCTTGAAGAAGCATTTTGAACAAGTGAAGGAGGGAAGAATATTGAGCGCCAAGGTGAAGAAACACTTGAAAAAAGGGAAGAATCTTTCAATGGGATTTGGTTTTGTAGAATTTGACTCTGTGGAGACAGCCACAGAGGTTTGCAAGGGTTTACAGGGAACAATTTTGGACGGCCACCAACTTATTTTGCAACATTGTCATGCCAAGCAAGATGATGTGCCAAAAAAAGTTGTGAAGGACAAAAGTTCAACAAAAATACTTGTAAAAAATGTAGCCTTTGAGGCTACAAAGAAAGAGCTTCGACAGTTGTTTAGTACATATGGCGAGATTAAAAGCTTGCGGTTACCAAACAGATTGGGACAGCATAGAGGCTTTGCATTTGTGGAGTTTGCCACAAAGCAAGAGGCAGAAAATGCCATCCAAGCGCTTGCAAGCACACATCTGTACGGTCGCCATCTGGTTCTGGAGAGAGCAAAGGAAGGTGAGACCTTGGAAGATTTAAGAGCTCGAATAGCTGCTCAGTTCACAGATGACCAAAATACTATTTCCAGGAAAAGGAAGGCTGTCGCAACCTTGGATGAAGATAACATGAAATTTGATATGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

338

Amino Acids

37.92

Weight (kDa)

9.16

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 68	8e-08	RNA recognition motif
RRM_1	PF00076	123 - 196	5.4e-14	RNA recognition motif
RRM_1	PF00076	221 - 288	4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	4 cut(s)	83, 379, 515, 998
AfaI	GTAC	2 cut(s)	721, 851
AfeI	AGCGCT	1 cut(s)	831
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflIII	ACRYGT	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	229, 953
AluBI	AGCT	8 cut(s)	161, 170, 260, 408, 703, 741, 911, 920
AluI	AGCT	8 cut(s)	161, 170, 260, 408, 703, 741, 911, 920
Alw21I	GWGCWC	2 cut(s)	163, 913
Alw26I	GTCTC	2 cut(s)	524, 884
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	831
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	2 cut(s)	167, 920
ApoI	RAATTY	4 cut(s)	83, 379, 515, 998
AspLEI	GCGC	2 cut(s)	455, 832
AsuHPI	GGTGA	2 cut(s)	472, 899
AvaI	CYCGRG	1 cut(s)	162
BanII	GRGCYC	3 cut(s)	163, 229, 913
Bbv12I	GWGCWC	2 cut(s)	163, 913
BbvI	GCAGC	2 cut(s)	179, 907
BccI	CCATC	2 cut(s)	830, 867
BceAI	ACGGC	1 cut(s)	592
BciT130I	CCWGG	2 cut(s)	231, 955
BcoDI	GTCTC	2 cut(s)	524, 884
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	456, 833
BglI	GCCNNNNNGGC	1 cut(s)	686
BisI	GCNGC	2 cut(s)	168, 921
BlsI	GCNGC	2 cut(s)	169, 922
Bme1390I	CCNGG	2 cut(s)	231, 955
BmeT110I	CYCGRG	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	231, 955
BpmI	CTGGAG	3 cut(s)	177, 306, 890
BsaBI	GATNNNNATC	2 cut(s)	333, 339
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	3 cut(s)	456, 894, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	2 cut(s)	241, 274
Bse8I	GATNNNNATC	2 cut(s)	333, 339
BseBI	CCWGG	2 cut(s)	231, 955
BseDI	CCNNGG	3 cut(s)	456, 894, 978
BseGI	GGATG	3 cut(s)	208, 822, 988
BseJI	GATNNNNATC	2 cut(s)	333, 339
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMI	GCAATG	2 cut(s)	241, 274
BseMII	CTCAG	2 cut(s)	252, 938
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	179, 907
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	856
BsiHKAI	GWGCWC	2 cut(s)	163, 913
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmAI	GTCTC	2 cut(s)	524, 884
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	3 cut(s)	163, 229, 913
Bsp143I	GATC	3 cut(s)	328, 334, 340
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	2 cut(s)	253, 937
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	884
BsrDI	GCAATG	2 cut(s)	241, 274
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	456, 894, 978
BssMI	GATC	3 cut(s)	328, 334, 340
BssT1I	CCWWGG	3 cut(s)	456, 894, 978
Bst2UI	CCWGG	2 cut(s)	231, 955
Bst4CI	ACNGT	2 cut(s)	711, 854
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	743, 834, 838
BstDEI	CTNAG	3 cut(s)	242, 261, 924
BstEII	GGTNACC	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	208, 822, 988
BstH2I	RGCGCY	2 cut(s)	456, 833
BstHHI	GCGC	2 cut(s)	455, 832
BstKTI	GATC	3 cut(s)	331, 337, 343
BstMAI	GTCTC	2 cut(s)	524, 884
BstMBI	GATC	3 cut(s)	328, 334, 340
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 686, 818, 827, 917
BstNI	CCWGG	2 cut(s)	231, 955
BstPI	GGTNACC	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	229, 953
BstV1I	GCAGC	2 cut(s)	179, 907
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	208, 822, 988
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	743, 834, 838
CfoI	GCGC	2 cut(s)	455, 832
Csp6I	GTAC	2 cut(s)	720, 850
CviAII	CATG	3 cut(s)	17, 605, 994
CviQI	GTAC	2 cut(s)	720, 850
DdeI	CTNAG	3 cut(s)	242, 261, 924
DpnI	GATC	3 cut(s)	330, 336, 342
DpnII	GATC	3 cut(s)	328, 334, 340
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	577
Ecl136II	GAGCTC	2 cut(s)	161, 911
Eco130I	CCWWGG	3 cut(s)	456, 894, 978
Eco24I	GRGCYC	3 cut(s)	163, 229, 913
Eco31I	GGTCTC	1 cut(s)	884
Eco47III	AGCGCT	1 cut(s)	831
Eco53kI	GAGCTC	2 cut(s)	161, 911
Eco88I	CYCGRG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	747
EcoICRI	GAGCTC	2 cut(s)	161, 911
EcoO65I	GGTNACC	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	229, 953
EcoT14I	CCWWGG	3 cut(s)	456, 894, 978
EcoT38I	GRGCYC	3 cut(s)	163, 229, 913
ErhI	CCWWGG	3 cut(s)	456, 894, 978
FaeI	CATG	3 cut(s)	20, 608, 997
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	3 cut(s)	16, 604, 993
FauNDI	CATATG	2 cut(s)	43, 724
Fnu4HI	GCNGC	2 cut(s)	168, 921
FokI	GGATG	3 cut(s)	215, 809, 995
FriOI	GRGCYC	3 cut(s)	163, 229, 913
Fsp4HI	GCNGC	2 cut(s)	168, 921
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	454, 831
GluI	GCNGC	2 cut(s)	168, 921
GsuI	CTGGAG	3 cut(s)	177, 306, 890
HaeII	RGCGCY	2 cut(s)	456, 833
HaeIII	GGCC	1 cut(s)	579
HhaI	GCGC	2 cut(s)	455, 832
Hin1II	CATG	3 cut(s)	20, 608, 997
Hin6I	GCGC	2 cut(s)	453, 830
HinP1I	GCGC	2 cut(s)	453, 830
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	3 cut(s)	356, 487, 521
HphI	GGTGA	2 cut(s)	472, 899
Hpy166II	GTNNAC	3 cut(s)	62, 557, 930
Hpy188I	TCNGA	3 cut(s)	55, 117, 400
Hpy188III	TCNNGA	9 cut(s)	156, 323, 332, 338, 344, 360, 376, 391, 869
Hpy8I	GTNNAC	3 cut(s)	62, 557, 930
HpyAV	CCTTC	6 cut(s)	162, 308, 427, 634, 878, 958
HpyCH4III	ACNGT	2 cut(s)	711, 854
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	549, 595, 782, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 686, 818, 827, 917
HpyF3I	CTNAG	3 cut(s)	242, 261, 924
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	20, 608, 997
HspAI	GCGC	2 cut(s)	453, 830
Kzo9I	GATC	3 cut(s)	328, 334, 340
LmnI	GCTCC	2 cut(s)	158, 232
Lsp1109I	GCAGC	2 cut(s)	179, 907
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	357, 747
MalI	GATC	3 cut(s)	330, 336, 342
MboI	GATC	3 cut(s)	328, 334, 340
MboII	GAAGA	7 cut(s)	42, 424, 453, 475, 496, 911, 998
MhlI	GDGCHC	3 cut(s)	163, 229, 913
MluCI	AATT	5 cut(s)	83, 379, 515, 567, 998
MlyI	GAGTC	2 cut(s)	365, 515
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	123, 219, 430, 535, 679, 767, 802
MseI	TTAA	3 cut(s)	174, 735, 905
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	231, 955
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	231, 955
MwoI	GCNNNNNNNGC	5 cut(s)	167, 686, 818, 827, 917
NdeI	CATATG	2 cut(s)	43, 724
NdeII	GATC	3 cut(s)	328, 334, 340
NlaIII	CATG	3 cut(s)	20, 608, 997
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	162
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	953
PkrI	GCNGC	2 cut(s)	169, 922
PleI	GAGTC	2 cut(s)	364, 515
PpsI	GAGTC	2 cut(s)	364, 515
Psp124BI	GAGCTC	2 cut(s)	163, 913
Psp6I	CCWGG	2 cut(s)	229, 953
PspEI	GGTNACC	1 cut(s)	747
PspGI	CCWGG	2 cut(s)	229, 953
PspN4I	GGNNCC	1 cut(s)	228
PspXI	VCTCGAGB	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	721, 851
RsaNI	GTAC	2 cut(s)	720, 850
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	2 cut(s)	163, 913
SaqAI	TTAA	3 cut(s)	174, 735, 905
SatI	GCNGC	2 cut(s)	168, 921
Sau3AI	GATC	3 cut(s)	328, 334, 340
SchI	GAGTC	2 cut(s)	365, 515
ScrFI	CCNGG	2 cut(s)	231, 955
SduI	GDGCHC	3 cut(s)	163, 229, 913
Sfr274I	CTCGAG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	5 cut(s)	83, 379, 515, 567, 998
SsiI	CCGC	1 cut(s)	745
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	2 cut(s)	163, 913
StyD4I	CCNGG	2 cut(s)	229, 953
StyI	CCWWGG	3 cut(s)	456, 894, 978
TaaI	ACNGT	2 cut(s)	711, 854
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	163, 706, 913
TasI	AATT	5 cut(s)	83, 379, 515, 567, 998
TatI	WGTACW	1 cut(s)	719
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	174, 735, 905
Tru9I	TTAA	3 cut(s)	174, 735, 905
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	2 cut(s)	167, 920
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	17, 999, 1010
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	4 cut(s)	83, 379, 515, 998
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.