Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Reverse (-)

39461808 .. 39465262

Gene Structure 3455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1258600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTCATTGAGAACATAGCTCGGAAGTATGGTGTGAGCAAAGGTGATTTGCTTGACCGAGAAGCTGATGATCTCGCTGTACGGATTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACCAAAAAGTCTCTTACAAATGCTGGTATAAATGTAGAATCCTTAGAGAATTTTGCTGCTGGGAAAACTGATGGTGTTAAAAGAAGCAACCATGTTATACTGGTGAAGAACTTGCCATACGGTTCTACTGATGGTGAACTGGCAAAGATGTTTGGGAAATTTGGGAATTTGGAAAAAGTTGTTCTCCCGCCGATGAAGACATTGGCCTTGGTTGTTTTTCTTGAACCTGCTGACGCTCGAGCAGCTTTTAAAGGATATCTGGATGGTCCTTTATATTTGGAATGGGCTCCTGGTAATGTTCTTAGTCCAAGTTCAACAACTGAGAGCATTGAAAAGAACAATGCTGTTGTTGGTGAGCATGATGTCAAAAGGGTTATGTTAGAGCAGTATGTGGGAGGAATCGCTGATGTGGATGCGGATCCGGATAGAGTTGAGAACCTGAGCTTTAAGACATCAGACAAGAGTTTGAAAAAGCATTTTAGTGAAAAAGTGAAGGAGGGAAAATTATTAAGTGTCAAGGTAAAGAAACACTTGAAGAACGGGAAGAGCATTTCAATGGGTTTTGGTTTTCTGGAGTTTGATTCTGTGGAGACAGCTAAAATGTTTGCCGGGATTTACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

26.88

Weight (kDa)

7.8

Isoelectric Point (pI)

17.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	72 - 123	2.4e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	305, 533
AclWI	GGATC	2 cut(s)	530, 543
AcsI	RAATTY	3 cut(s)	166, 275, 283
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	6 cut(s)	341, 432, 449, 586, 652, 672
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	5 cut(s)	20, 65, 362, 561, 713
AluI	AGCT	5 cut(s)	20, 65, 362, 561, 713
Alw26I	GTCTC	3 cut(s)	110, 132, 701
AlwI	GGATC	2 cut(s)	530, 543
Ama87I	CYCGRG	1 cut(s)	354
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	173, 359
ApoI	RAATTY	3 cut(s)	166, 275, 283
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	4 cut(s)	56, 232, 263, 482
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	160, 371
BccI	CCATC	3 cut(s)	182, 242, 374
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	110, 132, 701
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	174, 360
BlsI	GCNGC	2 cut(s)	175, 361
Bme1390I	CCNGG	2 cut(s)	408, 727
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	405, 537
BmrFI	CCNGG	2 cut(s)	408, 727
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	727
BsaBI	GATNNNNATC	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	222, 261
Bse8I	GATNNNNATC	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	385, 535
BseJI	GATNNNNATC	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	429, 548
BseNI	ACTGG	2 cut(s)	222, 261
BseXI	GCAGC	2 cut(s)	160, 371
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	539, 726
BsmAI	GTCTC	3 cut(s)	110, 132, 701
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	70, 535
BspACI	CCGC	2 cut(s)	305, 533
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	2 cut(s)	430, 549
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	405, 537
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	530, 543
BspQI	GCTCTTC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	222, 261
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	70, 535
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	160, 419, 438, 557
BstF5I	GGATG	2 cut(s)	385, 535
BstKTI	GATC	2 cut(s)	73, 538
BstMAI	GTCTC	3 cut(s)	110, 132, 701
BstMBI	GATC	2 cut(s)	70, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	406, 725
BstV1I	GCAGC	2 cut(s)	160, 371
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	385, 535
BveI	ACCTGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	209, 476
CviJI	RGCY	7 cut(s)	20, 65, 323, 362, 404, 561, 713
CviKI_1	RGCY	7 cut(s)	20, 65, 323, 362, 404, 561, 713
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	4 cut(s)	160, 419, 438, 557
DpnI	GATC	2 cut(s)	72, 537
DpnII	GATC	2 cut(s)	70, 535
DraI	TTTAAA	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	212, 479
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	2 cut(s)	208, 475
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	174, 360
FokI	GGATG	2 cut(s)	392, 542
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	2 cut(s)	174, 360
GluI	GCNGC	2 cut(s)	174, 360
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	539, 726
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	212, 479
HinfI	GANTC	3 cut(s)	155, 516, 698
HpaII	CCGG	2 cut(s)	539, 726
HphI	GGTGA	4 cut(s)	56, 232, 263, 482
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	24, 574
Hpy188III	TCNNGA	4 cut(s)	338, 377, 539, 689
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	4 cut(s)	160, 419, 438, 557
Hsp92II	CATG	2 cut(s)	212, 479
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	70, 535
LguI	GCTCTTC	1 cut(s)	656
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	160, 371
LweI	GCATC	1 cut(s)	520
MalI	GATC	2 cut(s)	72, 537
MboI	GATC	2 cut(s)	70, 535
MboII	GAAGA	4 cut(s)	235, 325, 664, 673
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	4 cut(s)	166, 275, 283, 620
MnlI	CCTC	2 cut(s)	506, 607
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	4 cut(s)	195, 366, 564, 626
MslI	CAYNNNNRTG	2 cut(s)	597, 671
MspI	CCGG	2 cut(s)	539, 726
MspR9I	CCNGG	2 cut(s)	408, 727
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	2 cut(s)	70, 535
NlaIII	CATG	2 cut(s)	212, 479
NlaIV	GGNNCC	2 cut(s)	405, 537
PaeR7I	CTCGAG	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	155, 516, 698
PkrI	GCNGC	2 cut(s)	175, 361
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	405, 537
PspPI	GGNCC	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	354
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	597, 671
SapI	GCTCTTC	1 cut(s)	656
SaqAI	TTAA	4 cut(s)	195, 366, 564, 626
SatI	GCNGC	2 cut(s)	174, 360
Sau3AI	GATC	2 cut(s)	70, 535
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	408, 727
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	597, 671
SmlI	CTYRAG	2 cut(s)	102, 354
SmoI	CTYRAG	2 cut(s)	102, 354
Sse9I	AATT	4 cut(s)	166, 275, 283, 620
SsiI	CCGC	2 cut(s)	305, 533
StyD4I	CCNGG	2 cut(s)	406, 725
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	355
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	166, 275, 283, 620
TfiI	GAWTC	3 cut(s)	155, 516, 698
Tru1I	TTAA	4 cut(s)	195, 366, 564, 626
Tru9I	TTAA	4 cut(s)	195, 366, 564, 626
TseI	GCWGC	2 cut(s)	173, 359
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	166, 275, 283
XhoI	CTCGAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.