Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Reverse (-)

4302020 .. 4302742

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCTCCCGCTCGCTTTGCTTTTGGTTTTGCTACAATTTTGACTGGCTTCCACTTCTCTGTTACTGCATTGGTTGGTTTCATATCAAATGCATCTGGGTACTCAGCATCAAAACATGTTCCTCTTTGGGAACTTATTTGGTTCTCACTTGTGGCCAATGCCTCAATTACGGGGATGAACTTGAGTCTCATGCTTAACTCTGTCGGCTTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTCTCTGATTTCTCAAGGGAAGTCAAGATTGCTGTGGCAGTGGTGATAATAGGTGTGGGCATATGTACCGTCACCGATGTTAAAGTTAATGCCAAAGGTTTTCTCTGTGCTTGTGTGGCCATCTTGTGTACATCATTACAACAAATTTCAATAGGTTCATTACAGAAGTCAGAAGATGAGAAGAAATACTCAGTAGGCTCTTTTGAATTGCTCAGAAAGACAGCTCCAATTCAAGCTATCTCCCTTCTCATTCTTGGTCCATTTGTTGTTTACTTTCTTACTGGAAAACTTTTAACAGATTACAAGATGACGTCTGGTGCATTTGCTTTCACAATGCTCTCTTGCTCCCTAGCAGTATTCTGCAACATCAGTCGGTACCTCTGCATCGGAAGATTCTCAGCCGTGTCATTCCAGGTTTTATTCATTTTAGGCCACATGAACACTGTCTTGTGTCTTGACATTGGGGTGGCTTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

240

Amino Acids

25.86

Weight (kDa)

8.93

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	11 - 220	3.6e-08	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	557
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	1 cut(s)	9
AcoI	YGGCCR	2 cut(s)	153, 360
AcsI	RAATTY	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	4 cut(s)	101, 310, 373, 620
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	393, 449, 476
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	2 cut(s)	467, 479
AluI	AGCT	2 cut(s)	467, 479
Alw26I	GTCTC	2 cut(s)	191, 250
AoxI	GGCC	3 cut(s)	153, 360, 673
ApoI	RAATTY	1 cut(s)	387
Asp718I	GGTACC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	298, 307
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	2 cut(s)	155, 362
BanI	GGYRCC	1 cut(s)	618
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	656
BcoDI	GTCTC	2 cut(s)	191, 250
BfaI	CTAG	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	1 cut(s)	656
BmsI	GCATC	3 cut(s)	101, 116, 636
BpuEI	CTTGAG	2 cut(s)	202, 241
BsaHI	GRCGYC	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	49, 529
BseBI	CCWGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	4 cut(s)	117, 447, 469, 654
BseNI	ACTGG	2 cut(s)	49, 529
BshFI	GGCC	3 cut(s)	155, 362, 675
BshNI	GGYRCC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	191, 250
BsnI	GGCC	3 cut(s)	155, 362, 675
Bso31I	GGTCTC	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	371
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	155, 362, 675
BspCNI	CTCAG	4 cut(s)	116, 446, 468, 653
BspLI	GGNNCC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	49, 529
BssNI	GRCGYC	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	2 cut(s)	313, 688
BstACI	GRCGYC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	103, 433, 455, 640
BstF5I	GGATG	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	191, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 359
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	155, 362, 675
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 684
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	4 cut(s)	100, 309, 372, 619
CviAII	CATG	4 cut(s)	116, 190, 232, 679
CviQI	GTAC	4 cut(s)	100, 309, 372, 619
DdeI	CTNAG	4 cut(s)	103, 433, 455, 640
EaeI	YGGCCR	2 cut(s)	153, 360
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	94
FaeI	CATG	4 cut(s)	119, 193, 235, 682
FaiI	YATR	7 cut(s)	83, 117, 191, 233, 305, 307, 680
FatI	CATG	4 cut(s)	115, 189, 231, 678
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	305
FokI	GGATG	1 cut(s)	187
FspBI	CTAG	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	155, 362, 675
HapII	CCGG	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	119, 193, 235, 682
HinfI	GANTC	3 cut(s)	184, 235, 636
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	298, 307
Hpy166II	GTNNAC	2 cut(s)	372, 514
Hpy188I	TCNGA	5 cut(s)	216, 250, 415, 458, 632
Hpy188III	TCNNGA	2 cut(s)	268, 698
Hpy8I	GTNNAC	2 cut(s)	372, 514
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	313, 688
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	68, 92, 563, 606, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 359
HpyF3I	CTNAG	4 cut(s)	103, 433, 455, 640
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	4 cut(s)	119, 193, 235, 682
KpnI	GGTACC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	472, 593
LpnPI	CCDG	7 cut(s)	30, 81, 252, 510, 543, 641, 668
LweI	GCATC	3 cut(s)	101, 116, 636
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	61, 313
MbiI	CCGCTC	1 cut(s)	11
MboII	GAAGA	3 cut(s)	428, 436, 645
MlsI	TGGCCA	2 cut(s)	155, 362
MluCI	AATT	5 cut(s)	36, 165, 387, 449, 471
MluNI	TGGCCA	2 cut(s)	155, 362
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	15, 132, 172, 632
Mox20I	TGGCCA	2 cut(s)	155, 362
Mph1103I	ATGCAT	1 cut(s)	94
MscI	TGGCCA	2 cut(s)	155, 362
MseI	TTAA	4 cut(s)	195, 324, 330, 536
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	2 cut(s)	155, 362
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	17, 359
NdeI	CATATG	1 cut(s)	305
NlaIII	CATG	4 cut(s)	119, 193, 235, 682
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	1 cut(s)	119
PciI	ACATGT	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	235, 636
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PscI	ACATGT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	500
RsaI	GTAC	4 cut(s)	101, 310, 373, 620
RsaNI	GTAC	4 cut(s)	100, 309, 372, 619
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	195, 324, 330, 536
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	656
SetI	ASST	8 cut(s)	298, 343, 400, 469, 481, 557, 624, 660
SfaNI	GCATC	3 cut(s)	101, 116, 636
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	2 cut(s)	181, 256
SmoI	CTYRAG	2 cut(s)	181, 256
Sse9I	AATT	5 cut(s)	36, 165, 387, 449, 471
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	2 cut(s)	313, 688
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	1 cut(s)	221
TasI	AATT	5 cut(s)	36, 165, 387, 449, 471
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	235, 636
Tru1I	TTAA	4 cut(s)	195, 324, 330, 536
Tru9I	TTAA	4 cut(s)	195, 324, 330, 536
TscAI	CASTG	2 cut(s)	288, 691
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	70, 191, 390, 655, 695
TspRI	CASTG	2 cut(s)	288, 691
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.