Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010903

Physical Location & Seq

Genomic Coordinates Forward (+)

15113801 .. 15120373

Gene Structure 6573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGGACACTCATGGCTATATAACCTTCTCCATTTTATTTTTGTGGGAAAAGCCCCGAAACGAAACTGAGACAGTCACCGCCACCACCCAAACCACAGTGTTTGCCGCCGAAGCTGAGAACTTCGCCGCCGCCTTCGATTCATTTTTTGGTTCTAAACAATCACACACACCTGCAGCAATGTCGTCGAGGATTTGCGTCAAGAATTTGCCCAAACACGTCGACGATAAGAAGCTCCGGGAGCTTTTCTCCGAGAAAGGAGAAGTCACGGACGCCAAGCTCATGCGAACCAAGGAAGGCAAGAGCCGCCAGTTCGCTTTCATAGGGTTCCGCTCCGAGCTTCAAGCTCAGGAGGCCATCAAATACTTCAATAAAACTTTTATTGATACTTACCGGATTAGTTGCGAGCTTGCTCGGAAAGTTGGGGATCCCGAGATTCCGAGGCCGTGGAGTCGCCATACTAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAGAGAGAGAGTGAAGGTGCTGCCACAGCGGAGGCGAAAAGCCGGAGCGGAGTGGGAGGGAAGAGGAGTGAGGATGAGGATGAGATTGATGATCCTAAGCTTAAGGAGTTTTTGCAGGTGATGCAGCCTAGGGCTAAGTCGAAATTGTGGTCGAATGACACTGTGATTGCTAATGTTGAGGGGAAAATTGGGAAAGGAGAGAAGAAGAGAGAGCAGACGAAGAAGGGGAATGAAGAGAGTTTGGCAACTATGGATGTGGAGGAAGAGGAGGATGTGGAGAAGGATGATTCGCACAATGTGGCCAAGGATAATGTGGTTTCGGATATGGATTACTTTAAGAGTAGAGTGAAGAAGGATTGGTCGGATTCTGAAAGTAGTGACAGTGATGATGAGGAAGAAGAGGAGGAAGGTGAAGAATTAGATGCTAAGGAAGAAGCCAAGGTTAATGAAGAAGAGGCAGGAGAGGAACAAGTACTTGCACAGAGTAATCCTTTGTCCAGTTTGAAAGATGAGAAAGATGAAATGCTTGATACTAGTCGGCTTTTTGTTCGAAATTTGCCATTTACAGCAACAGAGGATGAGTTGGAAGAGCATTTTAGCAAATTCGGGGATGCACAAGTTCATCTTGTTATTGATAAAGAAATGAATCGGTCCAAGGGAATTGCTTATGTTCTTTACTCGCATCCAGAATCGGCACAAAGGGCATTAGAAGAATTAGACGGTTCAATTTTTCAAGGAAGATTGTTGCATGTTATGGCAGCAAAACAAAAAAACCCGTCTCCAGGGACTGATGATTCAGCAAACCAAGCTTCAAAGTCTCTTAAGCAACAAAGGGAGGAGAAGAGGAAAGCATCCGAAGCTAGTGGAGATACACGGGCATGGAATAGTTTGTTTATACGCACTGAGACAGCTGTTGATCACTTAGCTCGGAAGTTTGGGGTGAGCAAGAGTGATTTTCTTGACCCGCAAGCTGATGATGTCGCTGTACGTGTTGCTCAAGCGGAGACACAAGTGATTGCACAGACAAAAAAGGCTCTTACAAATGCTGGTGTAAATGTAGAATCTTTAGAGAATTTTGCTGCTGGGAAAGGTGGTGATATGAAAAGAAGCAACCATGTTATACTTGTGAAAAACTTGCCATATGGTTCTTCTGATAGTGAACTAGGAAACATGTTTGGAAAATTTGGGAGTTTTGAAAAAATCATTATGCCTCCGACAAAGACATTGGCGTTGGTTGTTTTTTTTGAACCTTCTGGAGCTCGAGCAGCTTTTAAAGGTTTGGCGTACAAGAAATACAAGGATGTTCCTCTATATTTGGAATGGGCTCCTGGCAATGTTCTTAGTCCAAGTTCAACAGCTGAGAGCAATGAAAAGAAGCATTATGCTGCTGCTGAACATAAGCCACTGGTGGAAGGAACTCCAGATGATCTTGATCTTGATCCTGATAGAGTTGAGTCACGAACTCTATATGTCAAGAATTTGAACTTCAAGACATCTGACGAGAGCTTGAAGAAGCATTTTGAACAAGTGAAGGAGGGAAAAATATTGAGCGCCAAGGTGAAGAAACACTTGAAAAAAGGGAAGAATCTTTCAATGGGATTTGGTTTTGTAGAATTTGACTCTGTGGAGACAGCCACAGAGGTTTGCAAGAGTTTACAGGGAACAATTTTGGATGGCCACCAACTTATTTTGCAGCGCTGTCATGCCAAGCAAGATGACGTGCCAAAAAAAGTTGTGAAGGACAAAAGTTCAACAAAAATACTTGTAAAAAATGTAGCCTTTGAGGCTACAAAGAAAGAGCTTCGACAGTTGTTTAGTACATATGGCGAGATTAAAAGCTTGCGGTTACCAAACAGATTGGGACAGCATAGAGGCTTTGCATTTGTGGAGTTTGCCACAAAGCAAGAGGCAGAAAATGCCATCCAAGCGCTTGCAAGCACACATCTGTATGGTCGCCATCTGGTTCTGGAGAGAGCAAAGGAAGGTGAAACCTTGGAAGATTTAAGAGCTCGAATAGCTGCTCAGTTCACAGATGACCAAAATACTATTTCCAGGAAAAGGAAGGCTGTCGCAACCTTGGATGAAGATAACATGAAATTTGATATGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

868

Amino Acids

97.47

Weight (kDa)

5.72

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	64 - 132	5.3e-15	RNA recognition motif
RRM_1	PF00076	344 - 412	7.4e-18	RNA recognition motif
RRM_1	PF00076	537 - 597	1.9e-07	RNA recognition motif
RRM_1	PF00076	652 - 725	7.7e-14	RNA recognition motif
RRM_1	PF00076	750 - 817	1.5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19610 AT5G05720 AT5G08695
fragaria_vesca	FvH4_3g11840
malus_domestica	MD05G1258600.v1.1 MD10G1238300.v1.1
prunus_persica	Prupe.4G106000_v2.0.a1
pyrus_communis	pycom10g19930
rosa_chinensis	RchiOBHm_Chr5g0019271
rosa_laevigata	RLG00000032433
rosa_multiflora	Rmu_sc0004608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058730 Rroxscaffold_1G00074200
rosa_rugosa	Rorug05G0049100 Rorug05G0049200
rosa_samantha	Rh5AG140200 Rh5BG139200 Rh5CG150600 Rh5DG139800
rosa_wichuraiana	Rw5G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	178, 595
Acc36I	ACCTGC	2 cut(s)	178, 595
AccBSI	CCGCTC	2 cut(s)	330, 537
AccI	GTMKAC	1 cut(s)	219
AclWI	GGATC	4 cut(s)	419, 432, 575, 1922
AcoI	YGGCCR	2 cut(s)	789, 2164
AcsI	RAATTY	8 cut(s)	202, 1042, 1091, 1561, 1670, 1966, 2102, 2585
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	787
AfaI	GTAC	4 cut(s)	963, 1476, 1775, 2308
AfeI	AGCGCT	2 cut(s)	2186, 2418
AfiI	CCNNNNNNNGG	3 cut(s)	460, 1271, 2547
AflII	CTTAAG	2 cut(s)	590, 1310
AflIII	ACRYGT	3 cut(s)	214, 1477, 1659
AhlI	ACTAGT	1 cut(s)	1022
AjiI	CACGTC	2 cut(s)	217, 2209
AjnI	CCWGG	3 cut(s)	1270, 1816, 2540
Alw21I	GWGCWC	2 cut(s)	1750, 2500
Alw26I	GTCTC	6 cut(s)	62, 1272, 1311, 1388, 1487, 2111
AlwI	GGATC	4 cut(s)	419, 432, 575, 1922
AlwNI	CAGNNNCTG	1 cut(s)	1277
Ama87I	CYCGRG	2 cut(s)	428, 1749
Aor51HI	AGCGCT	2 cut(s)	2186, 2418
AoxI	GGCC	4 cut(s)	351, 440, 789, 2164
ApoI	RAATTY	8 cut(s)	202, 1042, 1091, 1561, 1670, 1966, 2102, 2585
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
AspA2I	CCTAGG	1 cut(s)	617
AspLEI	GCGC	3 cut(s)	2042, 2187, 2419
AspS9I	GGNCC	1 cut(s)	1140
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	7 cut(s)	67, 619, 911, 1441, 1595, 2059, 2486
AsuII	TTCGAA	1 cut(s)	1039
AvaI	CYCGRG	2 cut(s)	428, 1749
AvaII	GGWCC	1 cut(s)	1140
AvrII	CCTAGG	1 cut(s)	617
BalI	TGGCCA	2 cut(s)	791, 2166
BamHI	GGATCC	1 cut(s)	424
BanII	GRGCYC	3 cut(s)	1750, 1816, 2500
Bbv12I	GWGCWC	2 cut(s)	1750, 2500
BccI	CCATC	4 cut(s)	362, 2156, 2417, 2454
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	4 cut(s)	162, 165, 196, 199
BciT130I	CCWGG	3 cut(s)	1272, 1818, 2542
BclI	TGATCA	1 cut(s)	1405
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	6 cut(s)	62, 1272, 1311, 1388, 1487, 2111
BcuI	ACTAGT	1 cut(s)	1022
BfaI	CTAG	4 cut(s)	618, 1023, 1350, 1652
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	3 cut(s)	2043, 2188, 2420
BfrI	CTTAAG	2 cut(s)	590, 1310
BfuAI	ACCTGC	2 cut(s)	178, 595
BglI	GCCNNNNNGGC	1 cut(s)	2273
BlnI	CCTAGG	1 cut(s)	617
BmcAI	AGTACT	1 cut(s)	963
Bme1390I	CCNGG	4 cut(s)	236, 1272, 1818, 2542
Bme18I	GGWCC	1 cut(s)	1140
BmeT110I	CYCGRG	2 cut(s)	428, 1749
BmgBI	CACGTC	2 cut(s)	217, 2209
BmgT120I	GGNCC	1 cut(s)	1140
BmiI	GGNNCC	3 cut(s)	326, 426, 1815
BmrFI	CCNGG	4 cut(s)	236, 1272, 1818, 2542
BmsI	GCATC	5 cut(s)	600, 901, 1090, 1180, 1349
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	4 cut(s)	1254, 1764, 1893, 2477
Bpu10I	CCTNAGC	3 cut(s)	345, 585, 915
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	1470
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	1478
BsaBI	GATNNNNATC	2 cut(s)	1920, 1926
BsaHI	GRCGYC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 1271, 2547
Bse1I	ACTGG	3 cut(s)	307, 987, 1899
Bse3DI	GCAATG	3 cut(s)	183, 1828, 1861
Bse8I	GATNNNNATC	2 cut(s)	1920, 1926
BseBI	CCWGG	3 cut(s)	1272, 1818, 2542
BseJI	GATNNNNATC	2 cut(s)	1920, 1926
BseLI	CCNNNNNNNGG	3 cut(s)	460, 1271, 2547
BseMI	GCAATG	3 cut(s)	183, 1828, 1861
BseMII	CTCAG	6 cut(s)	57, 105, 359, 1383, 1839, 2525
BseNI	ACTGG	3 cut(s)	307, 987, 1899
BseRI	GAGGAG	4 cut(s)	568, 770, 905, 1340
BseYI	CCCAGC	1 cut(s)	1571
BshFI	GGCC	4 cut(s)	353, 442, 791, 2166
BsiHKAI	GWGCWC	2 cut(s)	1750, 2500
BsiHKCI	CYCGRG	2 cut(s)	428, 1749
BsiSI	CCGG	3 cut(s)	235, 391, 532
BslFI	GGGAC	2 cut(s)	1288, 2364
BslI	CCNNNNNNNGG	3 cut(s)	460, 1271, 2547
BsmAI	GTCTC	6 cut(s)	62, 1272, 1311, 1388, 1487, 2111
BsmBI	CGTCTC	1 cut(s)	1272
BsmFI	GGGAC	2 cut(s)	1288, 2364
BsnI	GGCC	4 cut(s)	353, 442, 791, 2166
BsoBI	CYCGRG	2 cut(s)	428, 1749
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	3 cut(s)	1750, 1816, 2500
Bsp143I	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
BspANI	GGCC	4 cut(s)	353, 442, 791, 2166
BspCNI	CTCAG	6 cut(s)	58, 106, 358, 1384, 1840, 2524
BspLI	GGNNCC	3 cut(s)	326, 426, 1815
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	2 cut(s)	178, 595
BspPI	GGATC	4 cut(s)	419, 432, 575, 1922
BspQI	GCTCTTC	1 cut(s)	1071
BspT104I	TTCGAA	1 cut(s)	1039
BspTI	CTTAAG	2 cut(s)	590, 1310
BsrBI	CCGCTC	2 cut(s)	330, 537
BsrDI	GCAATG	3 cut(s)	183, 1828, 1861
BsrI	ACTGG	3 cut(s)	307, 987, 1899
BssMI	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	8 cut(s)	288, 617, 792, 927, 1143, 2043, 2481, 2565
Bst2UI	CCWGG	3 cut(s)	1272, 1818, 2542
Bst4CI	ACNGT	6 cut(s)	73, 97, 652, 872, 1211, 2298
Bst6I	CTCTTC	9 cut(s)	485, 545, 689, 717, 747, 882, 936, 1071, 1325
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	2 cut(s)	590, 1310
BstAPI	GCANNNNNTGC	2 cut(s)	610, 2405
BstBAI	YACGTR	1 cut(s)	1478
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	6 cut(s)	404, 408, 1458, 2330, 2421, 2425
BstDSI	CCRYGG	1 cut(s)	443
BstEII	GGTNACC	1 cut(s)	2334
BstH2I	RGCGCY	3 cut(s)	2043, 2188, 2420
BstHHI	GCGC	3 cut(s)	2042, 2187, 2419
BstKTI	GATC	6 cut(s)	427, 583, 1408, 1918, 1924, 1930
BstMAI	GTCTC	6 cut(s)	62, 1272, 1311, 1388, 1487, 2111
BstMBI	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
BstNI	CCWGG	3 cut(s)	1272, 1818, 2542
BstNSI	RCATGY	2 cut(s)	1241, 1663
BstPI	GGTNACC	1 cut(s)	2334
BstSCI	CCNGG	4 cut(s)	234, 1270, 1816, 2540
BstSFI	CTRYAG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	4 cut(s)	353, 442, 791, 2166
BtgI	CCRYGG	1 cut(s)	443
BtrI	CACGTC	2 cut(s)	217, 2209
BtsIMutI	CAGTG	5 cut(s)	102, 648, 877, 1389, 1892
BveI	ACCTGC	2 cut(s)	178, 595
Cac8I	GCNNGC	6 cut(s)	404, 408, 1458, 2330, 2421, 2425
CaiI	CAGNNNCTG	1 cut(s)	1277
CfoI	GCGC	3 cut(s)	2042, 2187, 2419
Cfr13I	GGNCC	1 cut(s)	1140
CseI	GACGC	2 cut(s)	184, 278
Csp6I	GTAC	4 cut(s)	962, 1475, 1774, 2307
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	8 cut(s)	11, 280, 1238, 1368, 1604, 1660, 2192, 2581
CviQI	GTAC	4 cut(s)	962, 1475, 1774, 2307
DpnI	GATC	6 cut(s)	426, 582, 1407, 1917, 1923, 1929
DpnII	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
DraI	TTTAAA	1 cut(s)	1762
DraIII	CACNNNGTG	1 cut(s)	787
EaeI	YGGCCR	2 cut(s)	789, 2164
Eam1104I	CTCTTC	9 cut(s)	485, 545, 689, 717, 747, 882, 936, 1071, 1325
EarI	CTCTTC	9 cut(s)	485, 545, 689, 717, 747, 882, 936, 1071, 1325
Ecl136II	GAGCTC	2 cut(s)	1748, 2498
Eco130I	CCWWGG	8 cut(s)	288, 617, 792, 927, 1143, 2043, 2481, 2565
Eco24I	GRGCYC	3 cut(s)	1750, 1816, 2500
Eco47I	GGWCC	1 cut(s)	1140
Eco47III	AGCGCT	2 cut(s)	2186, 2418
Eco53kI	GAGCTC	2 cut(s)	1748, 2498
Eco88I	CYCGRG	2 cut(s)	428, 1749
Eco91I	GGTNACC	1 cut(s)	2334
EcoICRI	GAGCTC	2 cut(s)	1748, 2498
EcoO65I	GGTNACC	1 cut(s)	2334
EcoRII	CCWGG	3 cut(s)	1270, 1816, 2540
EcoT14I	CCWWGG	8 cut(s)	288, 617, 792, 927, 1143, 2043, 2481, 2565
EcoT38I	GRGCYC	3 cut(s)	1750, 1816, 2500
ErhI	CCWWGG	8 cut(s)	288, 617, 792, 927, 1143, 2043, 2481, 2565
Esp3I	CGTCTC	1 cut(s)	1272
FaeI	CATG	8 cut(s)	14, 283, 1241, 1371, 1607, 1663, 2195, 2584
FalI	AAGNNNNNCTT	4 cut(s)	1098, 1130, 2042, 2074
FaqI	GGGAC	2 cut(s)	1288, 2364
FatI	CATG	8 cut(s)	10, 279, 1237, 1367, 1603, 1659, 2191, 2580
FauI	CCCGC	1 cut(s)	1461
FauNDI	CATATG	2 cut(s)	1630, 2311
FbaI	TGATCA	1 cut(s)	1405
FblI	GTMKAC	1 cut(s)	219
FriOI	GRGCYC	3 cut(s)	1750, 1816, 2500
FspBI	CTAG	4 cut(s)	618, 1023, 1350, 1652
GlaI	GCGC	3 cut(s)	2041, 2186, 2418
GsaI	CCCAGC	1 cut(s)	1575
GsuI	CTGGAG	4 cut(s)	1254, 1764, 1893, 2477
HaeII	RGCGCY	3 cut(s)	2043, 2188, 2420
HaeIII	GGCC	4 cut(s)	353, 442, 791, 2166
HapII	CCGG	3 cut(s)	235, 391, 532
HgaI	GACGC	2 cut(s)	184, 278
HhaI	GCGC	3 cut(s)	2042, 2187, 2419
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	8 cut(s)	14, 283, 1241, 1371, 1607, 1663, 2195, 2584
Hin6I	GCGC	3 cut(s)	2040, 2185, 2417
HinP1I	GCGC	3 cut(s)	2040, 2185, 2417
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	3 cut(s)	587, 1296, 2326
HpaII	CCGG	3 cut(s)	235, 391, 532
HphI	GGTGA	7 cut(s)	67, 619, 911, 1441, 1595, 2059, 2486
Hpy166II	GTNNAC	4 cut(s)	220, 1649, 2144, 2517
Hpy8I	GTNNAC	4 cut(s)	220, 1649, 2144, 2517
Hpy99I	CGWCG	3 cut(s)	187, 221, 224
HpyCH4III	ACNGT	6 cut(s)	73, 97, 652, 872, 1211, 2298
HpyCH4IV	ACGT	3 cut(s)	216, 1477, 2208
HpySE526I	ACGT	3 cut(s)	216, 1477, 2208
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	8 cut(s)	14, 283, 1241, 1371, 1607, 1663, 2195, 2584
HspAI	GCGC	3 cut(s)	2040, 2185, 2417
Ksp22I	TGATCA	1 cut(s)	1405
Kzo9I	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
LguI	GCTCTTC	1 cut(s)	1071
LmnI	GCTCC	6 cut(s)	237, 238, 335, 534, 1745, 1819
LweI	GCATC	5 cut(s)	600, 901, 1090, 1180, 1349
MaeI	CTAG	4 cut(s)	618, 1023, 1350, 1652
MaeII	ACGT	3 cut(s)	216, 1477, 2208
MaeIII	GTNAC	5 cut(s)	73, 262, 866, 1944, 2334
MalI	GATC	6 cut(s)	426, 582, 1407, 1917, 1923, 1929
MbiI	CCGCTC	2 cut(s)	330, 537
MboI	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	3 cut(s)	1750, 1816, 2500
MlsI	TGGCCA	2 cut(s)	791, 2166
MluNI	TGGCCA	2 cut(s)	791, 2166
MlyI	GAGTC	3 cut(s)	457, 1952, 2102
MmeI	TCCRAC	3 cut(s)	831, 1053, 1727
Mox20I	TGGCCA	2 cut(s)	791, 2166
MscI	TGGCCA	2 cut(s)	791, 2166
MseI	TTAA	7 cut(s)	591, 825, 933, 1311, 1761, 2322, 2492
MslI	CAYNNNNRTG	2 cut(s)	1366, 2436
Msp20I	TGGCCA	2 cut(s)	791, 2166
MspA1I	CMGCKG	3 cut(s)	518, 1400, 1847
MspCI	CTTAAG	2 cut(s)	590, 1310
MspI	CCGG	3 cut(s)	235, 391, 532
MspR9I	CCNGG	4 cut(s)	236, 1272, 1818, 2542
MvaI	CCWGG	3 cut(s)	1272, 1818, 2542
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	2 cut(s)	1630, 2311
NdeII	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
NlaIII	CATG	8 cut(s)	14, 283, 1241, 1371, 1607, 1663, 2195, 2584
NlaIV	GGNNCC	3 cut(s)	326, 426, 1815
NmuCI	GTSAC	4 cut(s)	73, 262, 866, 1944
NspI	RCATGY	2 cut(s)	1241, 1663
NspV	TTCGAA	1 cut(s)	1039
PaeR7I	CTCGAG	1 cut(s)	1749
PaqCI	CACCTGC	2 cut(s)	178, 595
PciI	ACATGT	1 cut(s)	1659
PciSI	GCTCTTC	1 cut(s)	1071
PfeI	GAWTC	9 cut(s)	137, 433, 776, 854, 1135, 1178, 1283, 1550, 2074
PfoI	TCCNGGA	2 cut(s)	234, 2540
PleI	GAGTC	3 cut(s)	456, 1951, 2102
PpsI	GAGTC	3 cut(s)	456, 1951, 2102
Ppu21I	YACGTR	1 cut(s)	1478
PscI	ACATGT	1 cut(s)	1659
Psp124BI	GAGCTC	2 cut(s)	1750, 2500
Psp6I	CCWGG	3 cut(s)	1270, 1816, 2540
PspEI	GGTNACC	1 cut(s)	2334
PspFI	CCCAGC	1 cut(s)	1571
PspGI	CCWGG	3 cut(s)	1270, 1816, 2540
PspN4I	GGNNCC	3 cut(s)	326, 426, 1815
PspPI	GGNCC	1 cut(s)	1140
PspXI	VCTCGAGB	1 cut(s)	1749
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	1277
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	2 cut(s)	1400, 1847
RsaI	GTAC	4 cut(s)	963, 1476, 1775, 2308
RsaNI	GTAC	4 cut(s)	962, 1475, 1774, 2307
RseI	CAYNNNNRTG	2 cut(s)	1366, 2436
SacI	GAGCTC	2 cut(s)	1750, 2500
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	1071
SaqAI	TTAA	7 cut(s)	591, 825, 933, 1311, 1761, 2322, 2492
Sau3AI	GATC	6 cut(s)	424, 580, 1405, 1915, 1921, 1927
Sau96I	GGNCC	1 cut(s)	1140
ScaI	AGTACT	1 cut(s)	963
SchI	GAGTC	3 cut(s)	457, 1952, 2102
ScrFI	CCNGG	4 cut(s)	236, 1272, 1818, 2542
SduI	GDGCHC	3 cut(s)	1750, 1816, 2500
SfaNI	GCATC	5 cut(s)	600, 901, 1090, 1180, 1349
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	1749
SfuI	TTCGAA	1 cut(s)	1039
SgrDI	CGTCGACG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	1140
SlaI	CTCGAG	1 cut(s)	1749
SmiMI	CAYNNNNRTG	2 cut(s)	1366, 2436
SmlI	CTYRAG	4 cut(s)	590, 1310, 1485, 1749
SmoI	CTYRAG	4 cut(s)	590, 1310, 1485, 1749
SpeI	ACTAGT	1 cut(s)	1022
SspI	AATATT	1 cut(s)	2034
SspMI	CTAG	4 cut(s)	618, 1023, 1350, 1652
SstI	GAGCTC	2 cut(s)	1750, 2500
StyD4I	CCNGG	4 cut(s)	234, 1270, 1816, 2540
StyI	CCWWGG	8 cut(s)	288, 617, 792, 927, 1143, 2043, 2481, 2565
TaaI	ACNGT	6 cut(s)	73, 97, 652, 872, 1211, 2298
TaiI	ACGT	3 cut(s)	219, 1480, 2211
TaqI	TCGA	9 cut(s)	135, 185, 219, 629, 641, 1039, 1750, 2293, 2500
TaqII	GACCGA	1 cut(s)	1128
TatI	WGTACW	2 cut(s)	961, 2306
TauI	GCSGC	4 cut(s)	107, 128, 131, 306
TfiI	GAWTC	9 cut(s)	137, 433, 776, 854, 1135, 1178, 1283, 1550, 2074
Tru1I	TTAA	7 cut(s)	591, 825, 933, 1311, 1761, 2322, 2492
Tru9I	TTAA	7 cut(s)	591, 825, 933, 1311, 1761, 2322, 2492
TscAI	CASTG	5 cut(s)	102, 655, 877, 1396, 1899
TseFI	GTSAC	4 cut(s)	73, 262, 866, 1944
Tsp45I	GTSAC	4 cut(s)	73, 262, 866, 1944
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	5 cut(s)	102, 655, 877, 1396, 1899
Vha464I	CTTAAG	2 cut(s)	590, 1310
VpaK11BI	GGWCC	1 cut(s)	1140
XapI	RAATTY	8 cut(s)	202, 1042, 1091, 1561, 1670, 1966, 2102, 2585
XceI	RCATGY	2 cut(s)	1241, 1663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XhoI	CTCGAG	1 cut(s)	1749
XmaJI	CCTAGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	4 cut(s)	618, 1023, 1350, 1652
ZrmI	AGTACT	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.