Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

2120472 .. 2126457

Gene Structure 5986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06839.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGCAAGGTCATCACCAGAATCATCATCAACACTTATCATCATCCTCCGCCACGTCTTCCCATGGAAACTTCATGAACAAAGATGGGTATGATATTGGAGAGATAGACCCATCACTCTTCCTCTATCTTGATGGACAAGGACATCATGATCCTCCATCAACTGCTCCTTCTCCTTTACATCATCATCACACAACTCAGAATTTGGCGATGAGACCTCCAACATCGACGCTCAACATCTTTCCATCTCAGCCTATGCACATAGAGCCACCTCCTTCTTCTACACACAATAAGGAAGGGAACCGCAAGGGTCTTGCCTCATCGGACCATGACATACCTAAATCGTCAGACCCTAAAACATTGAGAAGACTAGCACAAAACAGAGAAGCAGCAAGAAAAAGCAGATTACGTAAAAAGGCTTATGTTCAGCAACTCGAGTCATGTAGGATCAAACTGACCCAACTAGAACAAGAGATTCAACGGGCCAGATCCCAAGGCGTATTCTTTGGAGGGTCTCTTATAGGAGGAGATCAACAGCAAGGTGGACTACCCATTGGCCCTGGCAACATCAGCTCTGAAGCAGCGGTGTTCGATATGGAATATGCGAGGTGGCTGGAGGAGCAGCAGAGGCTATTAAACGAACTAAGGGTGGCAACACAAGAACACTTGTCCGAGAACGAGCTTAGGATGTTTGTGGACACATGTTTAGCTCATTATGACCATTTGATTAACCTCAAGGCTATGGTCGCTAAGACCGATGTCTTCCACCTCATTTCTGGAGCATGGAAAACTCCAGCTGAACGTTGCTTCTTGTGGATGGGTGGTTTCCGTCCATCGGAGATCATTAAGGTGATTGTGAACCAGATAGAACCATTGACGGAGCAACAGATAGTTGGGATATGTGGGCTGCAACAGTCCACACAAGAGGCCGAGGAGGCTCTCTCGCAAGGCCTCGAGGCGTTGAATCAATCACTTTCCGATAGCATTGTCTCTGACTCCCTCCCGCCTGCCTCCGCACCACTTCCTCCTCATCTATCCAATTTCATGTCACACATGTCCTTAGCTCTCAACAAGCTCTCTGCTCTCGAGGGCTTCGTTCTCCAGGCGGATAATTTGAGGCACCAAACGATCCATAGGCTGAACCAATTGTTGACGACCCGTCAAGAAGCACGGTGTCTTCTAGCCGTTGCGGAGTACTTCCACCGTCTTCAAGCTCTAAGTTCTCTCTGGCTAGCCCGTCCTCGGCAAGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

417

Amino Acids

46.6

Weight (kDa)

6.56

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	115 - 158	8.3e-07	Basic region leucine zipper
bZIP_1	PF00170	118 - 148	1.3e-07	bZIP transcription factor
DOG1	PF14144	212 - 286	8e-31	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	950
AccB1I	GGYRCC	1 cut(s)	1116
AciI	CCGC	7 cut(s)	48, 301, 581, 1001, 1011, 1103, 1187
AclI	AACGTT	1 cut(s)	799
AclWI	GGATC	4 cut(s)	143, 452, 480, 1120
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	2 cut(s)	832, 1239
AflIII	ACRYGT	2 cut(s)	698, 1050
AgsI	TTSAA	3 cut(s)	476, 961, 1208
AhdI	GACNNNNNGTC	1 cut(s)	1155
AjiI	CACGTC	1 cut(s)	54
AjnI	CCWGG	2 cut(s)	556, 1098
AluBI	AGCT	7 cut(s)	570, 679, 707, 794, 1061, 1072, 1211
AluI	AGCT	7 cut(s)	570, 679, 707, 794, 1061, 1072, 1211
Alw26I	GTCTC	3 cut(s)	205, 516, 991
AlwI	GGATC	4 cut(s)	143, 452, 480, 1120
Ama87I	CYCGRG	3 cut(s)	431, 950, 1082
AoxI	GGCC	4 cut(s)	480, 553, 924, 946
ApeKI	GCWGC	4 cut(s)	386, 578, 619, 904
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	3 cut(s)	322, 480, 554
AsuHPI	GGTGA	2 cut(s)	5, 859
AsuNHI	GCTAGC	1 cut(s)	1228
AvaI	CYCGRG	3 cut(s)	431, 950, 1082
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	1116
BbsI	GAAGAC	5 cut(s)	48, 370, 751, 1166, 1196
BbvI	GCAGC	4 cut(s)	398, 590, 631, 891
BccI	CCATC	8 cut(s)	77, 118, 125, 163, 250, 808, 838, 1241
BceAI	ACGGC	1 cut(s)	1166
BciT130I	CCWGG	2 cut(s)	558, 1100
BcoDI	GTCTC	3 cut(s)	205, 516, 991
BfaI	CTAG	4 cut(s)	368, 461, 1178, 1229
BglI	GCCNNNNNGGC	1 cut(s)	932
BisI	GCNGC	4 cut(s)	387, 579, 620, 905
BlsI	GCNGC	4 cut(s)	388, 580, 621, 906
BmcAI	AGTACT	1 cut(s)	1193
Bme1390I	CCNGG	2 cut(s)	558, 1100
Bme18I	GGWCC	1 cut(s)	322
BmeRI	GACNNNNNGTC	1 cut(s)	1155
BmeT110I	CYCGRG	3 cut(s)	431, 950, 1082
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	322, 480, 554
BmiI	GGNNCC	2 cut(s)	299, 1118
BmrFI	CCNGG	2 cut(s)	558, 1100
BmtI	GCTAGC	1 cut(s)	1232
BoxI	GACNNNNGTC	1 cut(s)	755
BpiI	GAAGAC	5 cut(s)	48, 370, 751, 1166, 1196
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
BpmI	CTGGAG	4 cut(s)	632, 774, 795, 1082
Bpu10I	CCTNAGC	2 cut(s)	680, 1057
BpuEI	CTTGAG	1 cut(s)	716
BsaAI	YACGTR	1 cut(s)	407
BsaI	GGTCTC	2 cut(s)	205, 516
BsaJI	CCNNGG	5 cut(s)	61, 490, 556, 927, 1238
Bsc4I	CCNNNNNNNGG	2 cut(s)	832, 1239
BseBI	CCWGG	2 cut(s)	558, 1100
BseDI	CCNNGG	5 cut(s)	61, 490, 556, 927, 1238
BseGI	GGATG	3 cut(s)	41, 690, 819
BseLI	CCNNNNNNNGG	2 cut(s)	832, 1239
BseMII	CTCAG	2 cut(s)	209, 260
BseRI	GAGGAG	4 cut(s)	537, 629, 944, 1014
BseXI	GCAGC	4 cut(s)	398, 590, 631, 891
BshFI	GGCC	4 cut(s)	482, 555, 926, 948
BshNI	GGYRCC	1 cut(s)	1116
BsiHKCI	CYCGRG	3 cut(s)	431, 950, 1082
BslI	CCNNNNNNNGG	2 cut(s)	832, 1239
BsmAI	GTCTC	3 cut(s)	205, 516, 991
BsnI	GGCC	4 cut(s)	482, 555, 926, 948
Bso31I	GGTCTC	2 cut(s)	205, 516
BsoBI	CYCGRG	3 cut(s)	431, 950, 1082
Bsp143I	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	7 cut(s)	48, 301, 581, 1001, 1011, 1103, 1187
BspANI	GGCC	4 cut(s)	482, 555, 926, 948
BspCNI	CTCAG	2 cut(s)	208, 259
BspHI	TCATGA	2 cut(s)	72, 145
BspLI	GGNNCC	2 cut(s)	299, 1118
BspOI	GCTAGC	1 cut(s)	1232
BspPI	GGATC	4 cut(s)	143, 452, 480, 1120
BspT107I	GGYRCC	1 cut(s)	1116
BspTNI	GGTCTC	2 cut(s)	205, 516
BssECI	CCNNGG	5 cut(s)	61, 490, 556, 927, 1238
BssMI	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
BssT1I	CCWWGG	2 cut(s)	61, 490
Bst2UI	CCWGG	2 cut(s)	558, 1100
Bst4CI	ACNGT	3 cut(s)	912, 1170, 1202
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	1005, 1230
BstDEI	CTNAG	7 cut(s)	195, 246, 641, 680, 747, 1057, 1214
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	41, 690, 819
BstKTI	GATC	6 cut(s)	151, 447, 488, 529, 840, 1128
BstMAI	GTCTC	3 cut(s)	205, 516, 991
BstMBI	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 567, 616, 625, 743, 932
BstNI	CCWGG	2 cut(s)	558, 1100
BstNSI	RCATGY	2 cut(s)	702, 1054
BstPAI	GACNNNNGTC	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	556, 1098
BstSNI	TACGTA	1 cut(s)	407
BstV1I	GCAGC	4 cut(s)	398, 590, 631, 891
BstV2I	GAAGAC	5 cut(s)	48, 370, 751, 1166, 1196
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	4 cut(s)	482, 555, 926, 948
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	41, 690, 819
Cac8I	GCNNGC	2 cut(s)	1005, 1230
CciI	TCATGA	2 cut(s)	72, 145
Cfr13I	GGNCC	3 cut(s)	322, 480, 554
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	1192
CviAII	CATG	9 cut(s)	62, 73, 146, 326, 438, 699, 780, 1042, 1051
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	7 cut(s)	195, 246, 641, 680, 747, 1057, 1214
DpnI	GATC	6 cut(s)	150, 446, 487, 528, 839, 1127
DpnII	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
DriI	GACNNNNNGTC	1 cut(s)	1155
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	1155
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	37, 1118
Eco105I	TACGTA	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	61, 490
Eco147I	AGGCCT	1 cut(s)	948
Eco31I	GGTCTC	2 cut(s)	205, 516
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	3 cut(s)	431, 950, 1082
EcoRII	CCWGG	2 cut(s)	556, 1098
EcoT14I	CCWWGG	2 cut(s)	61, 490
ErhI	CCWWGG	2 cut(s)	61, 490
FaeI	CATG	9 cut(s)	65, 76, 149, 329, 441, 702, 783, 1045, 1054
FatI	CATG	9 cut(s)	61, 72, 145, 325, 437, 698, 779, 1041, 1050
FauI	CCCGC	1 cut(s)	1008
Fnu4HI	GCNGC	4 cut(s)	387, 579, 620, 905
FokI	GGATG	3 cut(s)	28, 697, 826
Fsp4HI	GCNGC	4 cut(s)	387, 579, 620, 905
FspBI	CTAG	4 cut(s)	368, 461, 1178, 1229
GluI	GCNGC	4 cut(s)	387, 579, 620, 905
GsuI	CTGGAG	4 cut(s)	632, 774, 795, 1082
HaeIII	GGCC	4 cut(s)	482, 555, 926, 948
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	9 cut(s)	65, 76, 149, 329, 441, 702, 783, 1045, 1054
HincII	GTYRAC	1 cut(s)	1149
HindII	GTYRAC	1 cut(s)	1149
HinfI	GANTC	5 cut(s)	19, 434, 472, 961, 992
HphI	GGTGA	2 cut(s)	5, 859
Hpy166II	GTNNAC	5 cut(s)	542, 694, 856, 915, 1149
Hpy188I	TCNGA	8 cut(s)	198, 322, 346, 574, 670, 835, 976, 991
Hpy188III	TCNNGA	6 cut(s)	73, 128, 146, 774, 1082, 1160
Hpy8I	GTNNAC	5 cut(s)	542, 694, 856, 915, 1149
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	177, 282, 287
HpyCH4III	ACNGT	3 cut(s)	912, 1170, 1202
HpyCH4IV	ACGT	3 cut(s)	53, 406, 799
HpyCH4V	TGCA	3 cut(s)	4, 256, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 567, 616, 625, 743, 932
HpyF3I	CTNAG	7 cut(s)	195, 246, 641, 680, 747, 1057, 1214
HpySE526I	ACGT	3 cut(s)	53, 406, 799
Hsp92II	CATG	9 cut(s)	65, 76, 149, 329, 441, 702, 783, 1045, 1054
Kzo9I	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
LmnI	GCTCC	4 cut(s)	169, 616, 776, 877
Lsp1109I	GCAGC	4 cut(s)	398, 590, 631, 891
MaeI	CTAG	4 cut(s)	368, 461, 1178, 1229
MaeII	ACGT	3 cut(s)	53, 406, 799
MaeIII	GTNAC	1 cut(s)	1044
MalI	GATC	6 cut(s)	150, 446, 487, 528, 839, 1127
MboI	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
MboII	GAAGA	7 cut(s)	48, 109, 267, 375, 751, 1166, 1196
MfeI	CAATTG	1 cut(s)	1142
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	4 cut(s)	199, 1036, 1108, 1142
MlyI	GAGTC	2 cut(s)	443, 986
MmeI	TCCRAC	1 cut(s)	242
MseI	TTAA	3 cut(s)	632, 726, 843
MslI	CAYNNNNRTG	1 cut(s)	845
MspA1I	CMGCKG	2 cut(s)	581, 794
MspR9I	CCNGG	2 cut(s)	558, 1100
MunI	CAATTG	1 cut(s)	1142
MvaI	CCWGG	2 cut(s)	558, 1100
MwoI	GCNNNNNNNGC	6 cut(s)	262, 567, 616, 625, 743, 932
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
NheI	GCTAGC	1 cut(s)	1228
NlaIII	CATG	9 cut(s)	65, 76, 149, 329, 441, 702, 783, 1045, 1054
NlaIV	GGNNCC	2 cut(s)	299, 1118
NmeAIII	GCCGAG	2 cut(s)	952, 1219
NmuCI	GTSAC	1 cut(s)	1044
NspI	RCATGY	2 cut(s)	702, 1054
PaeR7I	CTCGAG	3 cut(s)	431, 950, 1082
PagI	TCATGA	2 cut(s)	72, 145
PceI	AGGCCT	1 cut(s)	948
PciI	ACATGT	2 cut(s)	698, 1050
PcsI	WCGNNNNNNNCGW	2 cut(s)	750, 1089
PfeI	GAWTC	3 cut(s)	19, 472, 961
PkrI	GCNGC	4 cut(s)	388, 580, 621, 906
PleI	GAGTC	2 cut(s)	442, 986
PpsI	GAGTC	2 cut(s)	442, 986
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	2 cut(s)	698, 1050
PshAI	GACNNNNGTC	1 cut(s)	755
Psp1406I	AACGTT	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	556, 1098
PspGI	CCWGG	2 cut(s)	556, 1098
PspN4I	GGNNCC	2 cut(s)	299, 1118
PspPI	GGNCC	3 cut(s)	322, 480, 554
PspXI	VCTCGAGB	2 cut(s)	431, 950
PsuI	RGATCY	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	1 cut(s)	845
SaqAI	TTAA	3 cut(s)	632, 726, 843
SatI	GCNGC	4 cut(s)	387, 579, 620, 905
Sau3AI	GATC	6 cut(s)	148, 444, 485, 526, 837, 1125
Sau96I	GGNCC	3 cut(s)	322, 480, 554
ScaI	AGTACT	1 cut(s)	1193
SchI	GAGTC	2 cut(s)	443, 986
ScrFI	CCNGG	2 cut(s)	558, 1100
Sfr274I	CTCGAG	3 cut(s)	431, 950, 1082
SinI	GGWCC	1 cut(s)	322
SlaI	CTCGAG	3 cut(s)	431, 950, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	4 cut(s)	431, 731, 950, 1082
SmoI	CTYRAG	4 cut(s)	431, 731, 950, 1082
SnaBI	TACGTA	1 cut(s)	407
Sse9I	AATT	4 cut(s)	199, 1036, 1108, 1142
SseBI	AGGCCT	1 cut(s)	948
SsiI	CCGC	7 cut(s)	48, 301, 581, 1001, 1011, 1103, 1187
SspMI	CTAG	4 cut(s)	368, 461, 1178, 1229
StuI	AGGCCT	1 cut(s)	948
StyD4I	CCNGG	2 cut(s)	556, 1098
StyI	CCWWGG	2 cut(s)	61, 490
TaaI	ACNGT	3 cut(s)	912, 1170, 1202
TaiI	ACGT	3 cut(s)	56, 409, 802
TaqI	TCGA	5 cut(s)	224, 432, 588, 951, 1083
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	4 cut(s)	199, 1036, 1108, 1142
TatI	WGTACW	1 cut(s)	1191
TfiI	GAWTC	3 cut(s)	19, 472, 961
Tru1I	TTAA	3 cut(s)	632, 726, 843
Tru9I	TTAA	3 cut(s)	632, 726, 843
TseFI	GTSAC	1 cut(s)	1044
TseI	GCWGC	4 cut(s)	386, 578, 619, 904
Tsp45I	GTSAC	1 cut(s)	1044
TspDTI	ATGAA	3 cut(s)	61, 89, 1030
TspGWI	ACGGA	2 cut(s)	815, 890
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	2 cut(s)	702, 1054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	770
XhoI	CTCGAG	3 cut(s)	431, 950, 1082
XspI	CTAG	4 cut(s)	368, 461, 1178, 1229
ZrmI	AGTACT	1 cut(s)	1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.