Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Reverse (-)

23840678 .. 23847037

Gene Structure 6360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGGGTTTTCGAGAGCTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACCTCAATTGGAAACAAAGCTTGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCCGCAACAACAGCAATCACAGCAACAACAACAAGAGCATCATCATCATCATCATCAAATACAAAACCATCATCATCATCATCAGCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATAGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAACCATCATCAACCAAGGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACCACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCTGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCCGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGTATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCGTTACAACAATCCACAAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCAGACACCATAGCTTCCGATTCACTGAGCATGCCCCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACTCTCGAAGGGTTCGTCAGACAGGCTGATAATCTGCGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACTCGCCAATCAGCACGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGCCTCCGAGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

531

Amino Acids

59.76

Weight (kDa)

6.6

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	235 - 279	2.2e-07	Basic region leucine zipper
bZIP_1	PF00170	238 - 278	3.8e-08	bZIP transcription factor
DOG1	PF14144	328 - 402	2.1e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AciI	CCGC	4 cut(s)	116, 655, 976, 1450
AcoI	YGGCCR	2 cut(s)	576, 1095
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	1299
AfaI	GTAC	2 cut(s)	511, 1529
AfiI	CCNNNNNNNGG	1 cut(s)	1366
AgsI	TTSAA	6 cut(s)	98, 239, 407, 454, 546, 1304
AjnI	CCWGG	2 cut(s)	749, 849
Alw21I	GWGCWC	3 cut(s)	972, 993, 1549
Alw26I	GTCTC	2 cut(s)	544, 1323
AlwNI	CAGNNNCTG	1 cut(s)	929
Ama87I	CYCGRG	1 cut(s)	1019
AoxI	GGCC	5 cut(s)	440, 576, 1095, 1178, 1567
ApoI	RAATTY	1 cut(s)	234
ArsI	GACNNNNNNTTYG	2 cut(s)	1413, 1445
Asp700I	GAANNNNTTC	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	662, 692, 1179, 1567
AsuHPI	GGTGA	4 cut(s)	805, 1084, 1282, 1457
AvaI	CYCGRG	1 cut(s)	1019
AvaII	GGWCC	2 cut(s)	662, 692
BalI	TGGCCA	2 cut(s)	578, 1097
BanII	GRGCYC	2 cut(s)	993, 1549
BbsI	GAAGAC	3 cut(s)	86, 1142, 1287
Bbv12I	GWGCWC	3 cut(s)	972, 993, 1549
BbvCI	CCTCAGC	1 cut(s)	1031
BceAI	ACGGC	2 cut(s)	547, 1554
BciT130I	CCWGG	2 cut(s)	751, 851
BcoDI	GTCTC	2 cut(s)	544, 1323
BfaI	CTAG	5 cut(s)	75, 332, 426, 843, 1575
BfmI	CTRYAG	2 cut(s)	513, 1454
BfuAI	ACCTGC	1 cut(s)	634
BmcAI	AGTACT	2 cut(s)	511, 1529
Bme1390I	CCNGG	2 cut(s)	751, 851
Bme18I	GGWCC	2 cut(s)	662, 692
BmeT110I	CYCGRG	1 cut(s)	1019
BmgT120I	GGNCC	4 cut(s)	662, 692, 1179, 1567
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	751, 851
BmsI	GCATC	5 cut(s)	160, 232, 240, 586, 1142
BpiI	GAAGAC	3 cut(s)	86, 1142, 1287
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	2 cut(s)	430, 1031
BpuEI	CTTGAG	2 cut(s)	983, 1067
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	5 cut(s)	498, 567, 849, 850, 1294
Bsc4I	CCNNNNNNNGG	1 cut(s)	1366
Bse118I	RCCGGY	1 cut(s)	1467
Bse1I	ACTGG	3 cut(s)	90, 899, 1315
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	751, 851
BseDI	CCNNGG	5 cut(s)	498, 567, 849, 850, 1294
BseGI	GGATG	4 cut(s)	260, 270, 1170, 1569
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	1366
BseNI	ACTGG	3 cut(s)	90, 899, 1315
BseRI	GAGGAG	3 cut(s)	38, 384, 980
BseYI	CCCAGC	1 cut(s)	816
BshFI	GGCC	5 cut(s)	442, 578, 1097, 1180, 1569
BsiHKAI	GWGCWC	3 cut(s)	972, 993, 1549
BsiHKCI	CYCGRG	1 cut(s)	1019
BsiSI	CCGG	2 cut(s)	1177, 1468
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	1366
BsmAI	GTCTC	2 cut(s)	544, 1323
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	5 cut(s)	442, 578, 1097, 1180, 1569
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	1019
Bsp1286I	GDGCHC	3 cut(s)	972, 993, 1549
Bsp143I	GATC	4 cut(s)	319, 334, 370, 1582
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	4 cut(s)	116, 655, 976, 1450
BspANI	GGCC	5 cut(s)	442, 578, 1097, 1180, 1569
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	2 cut(s)	517, 1458
BspMI	ACCTGC	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	1467
BsrI	ACTGG	3 cut(s)	90, 899, 1315
BssAI	RCCGGY	1 cut(s)	1467
BssECI	CCNNGG	5 cut(s)	498, 567, 849, 850, 1294
BssMI	GATC	4 cut(s)	319, 334, 370, 1582
BssT1I	CCWWGG	3 cut(s)	498, 567, 1294
Bst2UI	CCWGG	2 cut(s)	751, 851
Bst4CI	ACNGT	3 cut(s)	308, 1052, 1506
BstC8I	GCNNGC	6 cut(s)	72, 329, 729, 761, 1355, 1515
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	650
BstF5I	GGATG	4 cut(s)	260, 270, 1170, 1569
BstKTI	GATC	4 cut(s)	322, 337, 373, 1585
BstMAI	GTCTC	2 cut(s)	544, 1323
BstMBI	GATC	4 cut(s)	319, 334, 370, 1582
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 133, 208, 817, 967, 1283
BstNI	CCWGG	2 cut(s)	751, 851
BstNSI	RCATGY	3 cut(s)	482, 859, 1357
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	749, 849
BstSFI	CTRYAG	2 cut(s)	513, 1454
BstV2I	GAAGAC	3 cut(s)	86, 1142, 1287
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	5 cut(s)	442, 578, 1097, 1180, 1569
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	1520
BtsCI	GGATG	4 cut(s)	260, 270, 1170, 1569
BtsIMutI	CAGTG	4 cut(s)	313, 716, 1220, 1346
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	6 cut(s)	72, 329, 729, 761, 1355, 1515
CaiI	CAGNNNCTG	1 cut(s)	929
CciI	TCATGA	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	1467
Cfr13I	GGNCC	4 cut(s)	662, 692, 1179, 1567
CseI	GACGC	2 cut(s)	935, 1292
Csp6I	GTAC	2 cut(s)	510, 1528
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	2 cut(s)	510, 1528
DpnI	GATC	4 cut(s)	321, 336, 372, 1584
DpnII	GATC	4 cut(s)	319, 334, 370, 1582
EaeI	YGGCCR	2 cut(s)	576, 1095
Ecl136II	GAGCTC	2 cut(s)	991, 1547
Eco130I	CCWWGG	3 cut(s)	498, 567, 1294
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	993, 1549
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	662, 692
Eco53kI	GAGCTC	2 cut(s)	991, 1547
Eco57I	CTGAAG	1 cut(s)	1299
Eco88I	CYCGRG	1 cut(s)	1019
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	2 cut(s)	991, 1547
EcoO65I	GGTNACC	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	749, 849
EcoT14I	CCWWGG	3 cut(s)	498, 567, 1294
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	2 cut(s)	993, 1549
ErhI	CCWWGG	3 cut(s)	498, 567, 1294
FaqI	GGGAC	1 cut(s)	675
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	2 cut(s)	316, 778
FokI	GGATG	4 cut(s)	247, 257, 1177, 1576
FriOI	GRGCYC	2 cut(s)	993, 1549
FspBI	CTAG	5 cut(s)	75, 332, 426, 843, 1575
GsaI	CCCAGC	1 cut(s)	820
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	5 cut(s)	442, 578, 1097, 1180, 1569
HapII	CCGG	2 cut(s)	1177, 1468
HgaI	GACGC	2 cut(s)	935, 1292
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	5 cut(s)	794, 1138, 1173, 1343, 1462
HpaII	CCGG	2 cut(s)	1177, 1468
HphI	GGTGA	4 cut(s)	805, 1084, 1282, 1457
Hpy166II	GTNNAC	1 cut(s)	1045
Hpy8I	GTNNAC	1 cut(s)	1045
HpyAV	CCTTC	3 cut(s)	683, 717, 1415
HpyCH4III	ACNGT	3 cut(s)	308, 1052, 1506
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	8 cut(s)	253, 478, 515, 533, 835, 1006, 1456, 1474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 133, 208, 817, 967, 1283
HpySE526I	ACGT	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	319, 334, 370, 1582
LmnI	GCTCC	7 cut(s)	311, 397, 610, 881, 967, 996, 1228
LweI	GCATC	5 cut(s)	160, 232, 240, 586, 1142
MaeI	CTAG	5 cut(s)	75, 332, 426, 843, 1575
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	650, 1204, 1254
MalI	GATC	4 cut(s)	321, 336, 372, 1584
MboI	GATC	4 cut(s)	319, 334, 370, 1582
MboII	GAAGA	5 cut(s)	44, 86, 519, 1147, 1292
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	972, 993, 1549
MlsI	TGGCCA	2 cut(s)	578, 1097
MluCI	AATT	3 cut(s)	56, 234, 591
MluNI	TGGCCA	2 cut(s)	578, 1097
MlyI	GAGTC	2 cut(s)	803, 1132
MmeI	TCCRAC	2 cut(s)	291, 470
Mox20I	TGGCCA	2 cut(s)	578, 1097
Mph1103I	ATGCAT	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	523
MscI	TGGCCA	2 cut(s)	578, 1097
MseI	TTAA	2 cut(s)	807, 1194
MslI	CAYNNNNRTG	3 cut(s)	228, 1065, 1163
Msp20I	TGGCCA	2 cut(s)	578, 1097
MspA1I	CMGCKG	3 cut(s)	820, 1001, 1145
MspI	CCGG	2 cut(s)	1177, 1468
MspR9I	CCNGG	2 cut(s)	751, 851
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	751, 851
MwoI	GCNNNNNNNGC	6 cut(s)	124, 133, 208, 817, 967, 1283
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	2 cut(s)	316, 778
NdeII	GATC	4 cut(s)	319, 334, 370, 1582
NlaIV	GGNNCC	1 cut(s)	663
NmeAIII	GCCGAG	1 cut(s)	1549
NmuCI	GTSAC	1 cut(s)	1204
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	3 cut(s)	482, 859, 1357
PaeI	GCATGC	1 cut(s)	1357
PagI	TCATGA	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	850
PceI	AGGCCT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	1425
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	1173, 1343, 1462
PleI	GAGTC	2 cut(s)	802, 1132
PpsI	GAGTC	2 cut(s)	802, 1132
Psp124BI	GAGCTC	2 cut(s)	993, 1549
Psp6I	CCWGG	2 cut(s)	749, 849
PspEI	GGTNACC	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	816
PspGI	CCWGG	2 cut(s)	749, 849
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	4 cut(s)	662, 692, 1179, 1567
PstI	CTGCAG	2 cut(s)	517, 1458
PstNI	CAGNNNCTG	1 cut(s)	929
PvuII	CAGCTG	3 cut(s)	820, 1001, 1145
RsaI	GTAC	2 cut(s)	511, 1529
RsaNI	GTAC	2 cut(s)	510, 1528
RseI	CAYNNNNRTG	3 cut(s)	228, 1065, 1163
SacI	GAGCTC	2 cut(s)	993, 1549
SaqAI	TTAA	2 cut(s)	807, 1194
Sau3AI	GATC	4 cut(s)	319, 334, 370, 1582
Sau96I	GGNCC	4 cut(s)	662, 692, 1179, 1567
ScaI	AGTACT	2 cut(s)	511, 1529
SchI	GAGTC	2 cut(s)	803, 1132
ScrFI	CCNGG	2 cut(s)	751, 851
SduI	GDGCHC	3 cut(s)	972, 993, 1549
SfaNI	GCATC	5 cut(s)	160, 232, 240, 586, 1142
SfcI	CTRYAG	2 cut(s)	513, 1454
SinI	GGWCC	2 cut(s)	662, 692
SmiMI	CAYNNNNRTG	3 cut(s)	228, 1065, 1163
SmlI	CTYRAG	2 cut(s)	962, 1082
SmoI	CTYRAG	2 cut(s)	962, 1082
SphI	GCATGC	1 cut(s)	1357
Sse9I	AATT	3 cut(s)	56, 234, 591
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	116, 655, 976, 1450
SspMI	CTAG	5 cut(s)	75, 332, 426, 843, 1575
SstI	GAGCTC	2 cut(s)	993, 1549
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	749, 849
StyI	CCWWGG	3 cut(s)	498, 567, 1294
TaaI	ACNGT	3 cut(s)	308, 1052, 1506
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	11, 797, 939, 1215, 1419
TasI	AATT	3 cut(s)	56, 234, 591
TatI	WGTACW	2 cut(s)	509, 1527
TauI	GCSGC	1 cut(s)	1453
TfiI	GAWTC	3 cut(s)	1173, 1343, 1462
Tru1I	TTAA	2 cut(s)	807, 1194
Tru9I	TTAA	2 cut(s)	807, 1194
TscAI	CASTG	4 cut(s)	313, 723, 1227, 1353
TseFI	GTSAC	1 cut(s)	1204
Tsp45I	GTSAC	1 cut(s)	1204
TspDTI	ATGAA	6 cut(s)	70, 246, 277, 1091, 1147, 1415
TspGWI	ACGGA	2 cut(s)	258, 1241
TspRI	CASTG	4 cut(s)	313, 723, 1227, 1353
VpaK11BI	GGWCC	2 cut(s)	662, 692
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	3 cut(s)	482, 859, 1357
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	5 cut(s)	75, 332, 426, 843, 1575
ZrmI	AGTACT	2 cut(s)	511, 1529
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.