Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

24205935 .. 24212540

Gene Structure 6606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGGTTTTCGAGAGCTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACCTCAATTGGAAACAAAGCTCGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCCGCAACAACAGCAACCACAACAACAAGACCATCATCATCATCATCATCAGCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATGGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCATCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCAGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCAGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGGTAATTGCATATATGCTTATGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

397

Amino Acids

44.66

Weight (kDa)

6.54

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	224 - 268	1.5e-07	Basic region leucine zipper
bZIP_1	PF00170	227 - 267	2.6e-08	bZIP transcription factor
DOG1	PF14144	317 - 390	2e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AciI	CCGC	3 cut(s)	116, 622, 943
AcoI	YGGCCR	2 cut(s)	543, 1062
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	98, 206, 374, 421, 513
AjnI	CCWGG	2 cut(s)	716, 816
Alw21I	GWGCWC	2 cut(s)	939, 960
Alw26I	GTCTC	1 cut(s)	511
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	4 cut(s)	407, 543, 1062, 1145
ApeKI	GCWGC	9 cut(s)	166, 169, 264, 566, 569, 713, 799, 896, 965
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	629, 659, 1146
AsuHPI	GGTGA	2 cut(s)	772, 1051
AvaII	GGWCC	2 cut(s)	629, 659
BalI	TGGCCA	2 cut(s)	545, 1064
BanII	GRGCYC	1 cut(s)	960
BbsI	GAAGAC	2 cut(s)	86, 1109
Bbv12I	GWGCWC	2 cut(s)	939, 960
BbvCI	CCTCAGC	1 cut(s)	998
BbvI	GCAGC	9 cut(s)	178, 181, 276, 553, 556, 725, 786, 883, 977
BccI	CCATC	9 cut(s)	153, 250, 320, 439, 463, 529, 538, 583, 1126
BciT130I	CCWGG	2 cut(s)	718, 818
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	4 cut(s)	75, 299, 393, 810
BfmI	CTRYAG	2 cut(s)	480, 897
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	9 cut(s)	167, 170, 265, 567, 570, 714, 800, 897, 966
BlsI	GCNGC	9 cut(s)	168, 171, 266, 568, 571, 715, 801, 898, 967
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	718, 818
Bme18I	GGWCC	2 cut(s)	629, 659
BmgT120I	GGNCC	3 cut(s)	629, 659, 1146
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	718, 818
BmsI	GCATC	4 cut(s)	199, 207, 553, 1109
BpiI	GAAGAC	2 cut(s)	86, 1109
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	397, 998
BpuEI	CTTGAG	2 cut(s)	950, 1034
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	534, 816, 817
Bse1I	ACTGG	2 cut(s)	90, 866
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	718, 818
BseDI	CCNNGG	3 cut(s)	534, 816, 817
BseGI	GGATG	4 cut(s)	227, 237, 530, 1137
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	8 cut(s)	411, 426, 677, 713, 745, 903, 989, 1143
BseNI	ACTGG	2 cut(s)	90, 866
BseRI	GAGGAG	3 cut(s)	38, 351, 947
BseXI	GCAGC	9 cut(s)	178, 181, 276, 553, 556, 725, 786, 883, 977
BseYI	CCCAGC	1 cut(s)	783
BshFI	GGCC	4 cut(s)	409, 545, 1064, 1147
BsiHKAI	GWGCWC	2 cut(s)	939, 960
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	1 cut(s)	642
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	4 cut(s)	409, 545, 1064, 1147
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	939, 960
Bsp143I	GATC	3 cut(s)	286, 301, 337
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	3 cut(s)	116, 622, 943
BspANI	GGCC	4 cut(s)	409, 545, 1064, 1147
BspCNI	CTCAG	8 cut(s)	410, 427, 678, 712, 744, 902, 990, 1144
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	2 cut(s)	484, 901
BspMI	ACCTGC	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	90, 866
BssECI	CCNNGG	3 cut(s)	534, 816, 817
BssMI	GATC	3 cut(s)	286, 301, 337
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	718, 818
Bst4CI	ACNGT	2 cut(s)	275, 1019
BstC8I	GCNNGC	4 cut(s)	72, 296, 696, 728
BstDEI	CTNAG	9 cut(s)	397, 435, 678, 686, 699, 731, 889, 998, 1152
BstDSI	CCRYGG	1 cut(s)	534
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	227, 237, 530, 1137
BstKTI	GATC	3 cut(s)	289, 304, 340
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	3 cut(s)	286, 301, 337
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 175, 451, 784, 934
BstNI	CCWGG	2 cut(s)	718, 818
BstNSI	RCATGY	3 cut(s)	449, 826, 1099
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	716, 816
BstSFI	CTRYAG	2 cut(s)	480, 897
BstV1I	GCAGC	9 cut(s)	178, 181, 276, 553, 556, 725, 786, 883, 977
BstV2I	GAAGAC	2 cut(s)	86, 1109
BstXI	CCANNNNNNTGG	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	409, 545, 1064, 1147
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	4 cut(s)	227, 237, 530, 1137
BtsIMutI	CAGTG	2 cut(s)	280, 683
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	4 cut(s)	72, 296, 696, 728
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	629, 659, 1146
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	9 cut(s)	397, 435, 678, 686, 699, 731, 889, 998, 1152
DpnI	GATC	3 cut(s)	288, 303, 339
DpnII	GATC	3 cut(s)	286, 301, 337
EaeI	YGGCCR	2 cut(s)	543, 1062
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	629, 659
Eco53kI	GAGCTC	1 cut(s)	958
Eco91I	GGTNACC	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	716, 816
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	1 cut(s)	534
FaqI	GGGAC	1 cut(s)	642
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	2 cut(s)	283, 745
Fnu4HI	GCNGC	9 cut(s)	167, 170, 265, 567, 570, 714, 800, 897, 966
FokI	GGATG	4 cut(s)	214, 224, 517, 1144
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	9 cut(s)	167, 170, 265, 567, 570, 714, 800, 897, 966
FspBI	CTAG	4 cut(s)	75, 299, 393, 810
GluI	GCNGC	9 cut(s)	167, 170, 265, 567, 570, 714, 800, 897, 966
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	4 cut(s)	409, 545, 1064, 1147
HapII	CCGG	1 cut(s)	1144
HgaI	GACGC	1 cut(s)	902
HinfI	GANTC	3 cut(s)	761, 1105, 1140
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	2 cut(s)	772, 1051
Hpy166II	GTNNAC	1 cut(s)	1012
Hpy188I	TCNGA	8 cut(s)	436, 526, 649, 702, 734, 892, 962, 1153
Hpy188III	TCNNGA	7 cut(s)	12, 197, 374, 399, 579, 587, 1051
Hpy8I	GTNNAC	1 cut(s)	1012
HpyAV	CCTTC	2 cut(s)	650, 684
HpyCH4III	ACNGT	2 cut(s)	275, 1019
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	8 cut(s)	220, 445, 482, 500, 802, 899, 973, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 175, 451, 784, 934
HpyF3I	CTNAG	9 cut(s)	397, 435, 678, 686, 699, 731, 889, 998, 1152
HpySE526I	ACGT	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	286, 301, 337
LmnI	GCTCC	6 cut(s)	278, 364, 577, 848, 934, 963
Lsp1109I	GCAGC	9 cut(s)	178, 181, 276, 553, 556, 725, 786, 883, 977
LweI	GCATC	4 cut(s)	199, 207, 553, 1109
MaeI	CTAG	4 cut(s)	75, 299, 393, 810
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	3 cut(s)	288, 303, 339
MboI	GATC	3 cut(s)	286, 301, 337
MboII	GAAGA	4 cut(s)	44, 86, 486, 1114
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	939, 960
MlsI	TGGCCA	2 cut(s)	545, 1064
MluCI	AATT	4 cut(s)	56, 201, 558, 1167
MluNI	TGGCCA	2 cut(s)	545, 1064
MlyI	GAGTC	2 cut(s)	770, 1099
MmeI	TCCRAC	2 cut(s)	258, 437
Mox20I	TGGCCA	2 cut(s)	545, 1064
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	490
MscI	TGGCCA	2 cut(s)	545, 1064
MseI	TTAA	3 cut(s)	774, 1161, 1192
MslI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
Msp20I	TGGCCA	2 cut(s)	545, 1064
MspA1I	CMGCKG	3 cut(s)	787, 968, 1112
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	2 cut(s)	718, 818
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	718, 818
MwoI	GCNNNNNNNGC	5 cut(s)	124, 175, 451, 784, 934
NcoI	CCATGG	1 cut(s)	534
NdeI	CATATG	2 cut(s)	283, 745
NdeII	GATC	3 cut(s)	286, 301, 337
NlaIV	GGNNCC	1 cut(s)	630
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	3 cut(s)	449, 826, 1099
PagI	TCATGA	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	1140
PkrI	GCNGC	9 cut(s)	168, 171, 266, 568, 571, 715, 801, 898, 967
PleI	GAGTC	2 cut(s)	769, 1099
PpsI	GAGTC	2 cut(s)	769, 1099
Psp124BI	GAGCTC	1 cut(s)	960
Psp6I	CCWGG	2 cut(s)	716, 816
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	2 cut(s)	716, 816
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	3 cut(s)	629, 659, 1146
PstI	CTGCAG	2 cut(s)	484, 901
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	3 cut(s)	787, 968, 1112
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
SacI	GAGCTC	1 cut(s)	960
SaqAI	TTAA	3 cut(s)	774, 1161, 1192
SatI	GCNGC	9 cut(s)	167, 170, 265, 567, 570, 714, 800, 897, 966
Sau3AI	GATC	3 cut(s)	286, 301, 337
Sau96I	GGNCC	3 cut(s)	629, 659, 1146
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	2 cut(s)	770, 1099
ScrFI	CCNGG	2 cut(s)	718, 818
SduI	GDGCHC	2 cut(s)	939, 960
SfaNI	GCATC	4 cut(s)	199, 207, 553, 1109
SfcI	CTRYAG	2 cut(s)	480, 897
SinI	GGWCC	2 cut(s)	629, 659
SmiMI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
SmlI	CTYRAG	2 cut(s)	929, 1049
SmoI	CTYRAG	2 cut(s)	929, 1049
Sse9I	AATT	4 cut(s)	56, 201, 558, 1167
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	3 cut(s)	116, 622, 943
SspMI	CTAG	4 cut(s)	75, 299, 393, 810
SstI	GAGCTC	1 cut(s)	960
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	716, 816
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	275, 1019
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	11, 764, 906
TasI	AATT	4 cut(s)	56, 201, 558, 1167
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	1140
Tru1I	TTAA	3 cut(s)	774, 1161, 1192
Tru9I	TTAA	3 cut(s)	774, 1161, 1192
TscAI	CASTG	2 cut(s)	280, 690
TseI	GCWGC	9 cut(s)	166, 169, 264, 566, 569, 713, 799, 896, 965
TspDTI	ATGAA	5 cut(s)	70, 213, 244, 1058, 1114
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	280, 690
VpaK11BI	GGWCC	2 cut(s)	629, 659
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	3 cut(s)	449, 826, 1099
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	4 cut(s)	75, 299, 393, 810
ZrmI	AGTACT	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.