Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06839 AT5G06839 AT5G06839 |
| fragaria_vesca | FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 |
| malus_domestica | MD12G1061900.v1.1 MD14G1062300.v1.1 |
| prunus_persica | Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1 |
| pyrus_communis | pycom12g05460 pycom14g04990 |
| rosa_chinensis | RchiOBHm_Chr3g0480361 |
| rosa_laevigata | RLG00000023490 |
| rosa_roxburghii | Rroxscaffold_6G00401490 |
| rosa_rugosa | Rorug03G0183200 |
| rosa_samantha | Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400 |
| rosa_wichuraiana | Rw3G021070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 679 |
| AccII | CGCG | 1 cut(s) | 977 |
| AciI | CCGC | 4 cut(s) | 700, 977, 1049, 1081 |
| AcoI | YGGCCR | 2 cut(s) | 615, 1416 |
| AcsI | RAATTY | 1 cut(s) | 17 |
| AcuI | CTGAAG | 1 cut(s) | 1347 |
| AfaI | GTAC | 2 cut(s) | 550, 1577 |
| AgsI | TTSAA | 7 cut(s) | 12, 128, 146, 493, 585, 1352, 1469 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1539 |
| AjnI | CCWGG | 1 cut(s) | 794 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1442, 1474 |
| Alw21I | GWGCWC | 2 cut(s) | 1020, 1597 |
| Alw26I | GTCTC | 8 cut(s) | 65, 583, 660, 833, 1031, 1174, 1371, 1592 |
| AoxI | GGCC | 5 cut(s) | 479, 615, 940, 1226, 1416 |
| ApoI | RAATTY | 1 cut(s) | 17 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 100, 497 |
| AspS9I | GGNCC | 3 cut(s) | 707, 737, 1227 |
| AvaII | GGWCC | 2 cut(s) | 707, 737 |
| BalI | TGGCCA | 2 cut(s) | 617, 1418 |
| BanII | GRGCYC | 1 cut(s) | 1597 |
| BbsI | GAAGAC | 2 cut(s) | 39, 1190 |
| Bbv12I | GWGCWC | 2 cut(s) | 1020, 1597 |
| BceAI | ACGGC | 1 cut(s) | 586 |
| BciT130I | CCWGG | 1 cut(s) | 796 |
| BcoDI | GTCTC | 8 cut(s) | 65, 583, 660, 833, 1031, 1174, 1371, 1592 |
| BfaI | CTAG | 2 cut(s) | 888, 1551 |
| BfmI | CTRYAG | 2 cut(s) | 567, 1440 |
| BfuAI | ACCTGC | 1 cut(s) | 679 |
| BglII | AGATCT | 1 cut(s) | 890 |
| BlpI | GCTNAGC | 2 cut(s) | 1102, 1194 |
| BmcAI | AGTACT | 1 cut(s) | 1577 |
| Bme1390I | CCNGG | 1 cut(s) | 796 |
| Bme18I | GGWCC | 2 cut(s) | 707, 737 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1539 |
| BmgT120I | GGNCC | 3 cut(s) | 707, 737, 1227 |
| BmiI | GGNNCC | 2 cut(s) | 708, 739 |
| BmrFI | CCNGG | 1 cut(s) | 796 |
| BmsI | GCATC | 5 cut(s) | 252, 622, 1069, 1190, 1510 |
| BpiI | GAAGAC | 2 cut(s) | 39, 1190 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1322, 1354, 1390, 1422 |
| BpmI | CTGGAG | 2 cut(s) | 887, 1173 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1102, 1194 |
| BpuEI | CTTGAG | 1 cut(s) | 648 |
| BsaAI | YACGTR | 1 cut(s) | 520 |
| BsaI | GGTCTC | 1 cut(s) | 583 |
| BsaJI | CCNNGG | 2 cut(s) | 606, 1342 |
| BsaWI | WCCGGW | 1 cut(s) | 1066 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 906, 936, 1442, 1472 |
| Bse1I | ACTGG | 2 cut(s) | 120, 1363 |
| Bse3DI | GCAATG | 2 cut(s) | 579, 1572 |
| BseBI | CCWGG | 1 cut(s) | 796 |
| BseDI | CCNNGG | 2 cut(s) | 606, 1342 |
| BseGI | GGATG | 4 cut(s) | 272, 392, 1218, 1617 |
| BseMI | GCAATG | 2 cut(s) | 579, 1572 |
| BseNI | ACTGG | 2 cut(s) | 120, 1363 |
| BseRI | GAGGAG | 3 cut(s) | 927, 942, 1028 |
| BseYI | CCCAGC | 1 cut(s) | 290 |
| Bsh1236I | CGCG | 1 cut(s) | 977 |
| BshFI | GGCC | 5 cut(s) | 481, 617, 942, 1228, 1418 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1020, 1597 |
| BsiSI | CCGG | 1 cut(s) | 1067 |
| BslFI | GGGAC | 1 cut(s) | 1443 |
| BsmAI | GTCTC | 8 cut(s) | 65, 583, 660, 833, 1031, 1174, 1371, 1592 |
| BsmBI | CGTCTC | 3 cut(s) | 660, 1031, 1592 |
| BsmFI | GGGAC | 1 cut(s) | 1443 |
| BsnI | GGCC | 5 cut(s) | 481, 617, 942, 1228, 1418 |
| Bso31I | GGTCTC | 1 cut(s) | 583 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1020, 1597 |
| Bsp143I | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1102, 1194 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| BspACI | CCGC | 4 cut(s) | 700, 977, 1049, 1081 |
| BspANI | GGCC | 5 cut(s) | 481, 617, 942, 1228, 1418 |
| BspFNI | CGCG | 1 cut(s) | 977 |
| BspLI | GGNNCC | 2 cut(s) | 708, 739 |
| BspMAI | CTGCAG | 1 cut(s) | 571 |
| BspMI | ACCTGC | 1 cut(s) | 679 |
| BspTNI | GGTCTC | 1 cut(s) | 583 |
| BsrDI | GCAATG | 2 cut(s) | 579, 1572 |
| BsrI | ACTGG | 2 cut(s) | 120, 1363 |
| BssECI | CCNNGG | 2 cut(s) | 606, 1342 |
| BssMI | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| BssT1I | CCWWGG | 2 cut(s) | 606, 1342 |
| Bst2UI | CCWGG | 1 cut(s) | 796 |
| Bst4CI | ACNGT | 2 cut(s) | 314, 372 |
| Bst6I | CTCTTC | 2 cut(s) | 39, 1323 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 514, 877 |
| BstBAI | YACGTR | 1 cut(s) | 520 |
| BstC8I | GCNNGC | 4 cut(s) | 774, 806, 1037, 1563 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 4 cut(s) | 272, 392, 1218, 1617 |
| BstFNI | CGCG | 1 cut(s) | 977 |
| BstKTI | GATC | 4 cut(s) | 343, 893, 934, 1633 |
| BstMAI | GTCTC | 8 cut(s) | 65, 583, 660, 833, 1031, 1174, 1371, 1592 |
| BstMBI | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 113, 241, 514, 523, 862, 877, 1015, 1331 |
| BstNI | CCWGG | 1 cut(s) | 796 |
| BstNSI | RCATGY | 2 cut(s) | 904, 1180 |
| BstSCI | CCNGG | 1 cut(s) | 794 |
| BstSFI | CTRYAG | 2 cut(s) | 567, 1440 |
| BstUI | CGCG | 1 cut(s) | 977 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 1190 |
| BstX2I | RGATCY | 1 cut(s) | 890 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 613, 1426 |
| BstYI | RGATCY | 1 cut(s) | 890 |
| BsuRI | GGCC | 5 cut(s) | 481, 617, 942, 1228, 1418 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 2 cut(s) | 489, 1213 |
| BtsCI | GGATG | 4 cut(s) | 272, 392, 1218, 1617 |
| BtsIMutI | CAGTG | 2 cut(s) | 319, 761 |
| BveI | ACCTGC | 1 cut(s) | 679 |
| Cac8I | GCNNGC | 4 cut(s) | 774, 806, 1037, 1563 |
| Cfr13I | GGNCC | 3 cut(s) | 707, 737, 1227 |
| CseI | GACGC | 1 cut(s) | 983 |
| Csp6I | GTAC | 2 cut(s) | 549, 1576 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 295, 330 |
| CviQI | GTAC | 2 cut(s) | 549, 1576 |
| DpnI | GATC | 4 cut(s) | 342, 892, 933, 1632 |
| DpnII | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1539 |
| EaeI | YGGCCR | 2 cut(s) | 615, 1416 |
| Eam1104I | CTCTTC | 2 cut(s) | 39, 1323 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1539 |
| EarI | CTCTTC | 2 cut(s) | 39, 1323 |
| Ecl136II | GAGCTC | 1 cut(s) | 1595 |
| Eco130I | CCWWGG | 2 cut(s) | 606, 1342 |
| Eco147I | AGGCCT | 2 cut(s) | 481, 942 |
| Eco24I | GRGCYC | 1 cut(s) | 1597 |
| Eco31I | GGTCTC | 1 cut(s) | 583 |
| Eco47I | GGWCC | 2 cut(s) | 707, 737 |
| Eco53kI | GAGCTC | 1 cut(s) | 1595 |
| Eco57I | CTGAAG | 1 cut(s) | 1347 |
| EcoICRI | GAGCTC | 1 cut(s) | 1595 |
| EcoO109I | RGGNCCY | 1 cut(s) | 737 |
| EcoRII | CCWGG | 1 cut(s) | 794 |
| EcoT14I | CCWWGG | 2 cut(s) | 606, 1342 |
| EcoT38I | GRGCYC | 1 cut(s) | 1597 |
| ErhI | CCWWGG | 2 cut(s) | 606, 1342 |
| Esp3I | CGTCTC | 3 cut(s) | 660, 1031, 1592 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 85, 117 |
| FaqI | GGGAC | 1 cut(s) | 1443 |
| FokI | GGATG | 4 cut(s) | 259, 379, 1225, 1624 |
| FriOI | GRGCYC | 1 cut(s) | 1597 |
| FspBI | CTAG | 2 cut(s) | 888, 1551 |
| GsaI | CCCAGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 2 cut(s) | 887, 1173 |
| HaeIII | GGCC | 5 cut(s) | 481, 617, 942, 1228, 1418 |
| HapII | CCGG | 1 cut(s) | 1067 |
| HgaI | GACGC | 1 cut(s) | 983 |
| HindIII | AAGCTT | 1 cut(s) | 854 |
| HinfI | GANTC | 4 cut(s) | 247, 1186, 1391, 1510 |
| HpaII | CCGG | 1 cut(s) | 1067 |
| Hpy166II | GTNNAC | 1 cut(s) | 1093 |
| Hpy188III | TCNNGA | 6 cut(s) | 434, 471, 665, 1243, 1531, 1609 |
| Hpy8I | GTNNAC | 1 cut(s) | 1093 |
| HpyAV | CCTTC | 5 cut(s) | 660, 728, 762, 953, 1463 |
| HpyCH4III | ACNGT | 2 cut(s) | 314, 372 |
| HpyCH4IV | ACGT | 1 cut(s) | 519 |
| HpyCH4V | TGCA | 9 cut(s) | 29, 92, 265, 517, 569, 880, 1001, 1054, 1522 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 113, 241, 514, 523, 862, 877, 1015, 1331 |
| HpySE526I | ACGT | 1 cut(s) | 519 |
| Kzo9I | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| LmnI | GCTCC | 6 cut(s) | 317, 646, 652, 868, 1015, 1276 |
| LweI | GCATC | 5 cut(s) | 252, 622, 1069, 1190, 1510 |
| MaeI | CTAG | 2 cut(s) | 888, 1551 |
| MaeII | ACGT | 1 cut(s) | 519 |
| MaeIII | GTNAC | 1 cut(s) | 372 |
| MalI | GATC | 4 cut(s) | 342, 892, 933, 1632 |
| MboI | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| MboII | GAAGA | 7 cut(s) | 44, 53, 56, 93, 419, 1195, 1340 |
| MfeI | CAATTG | 1 cut(s) | 1096 |
| MflI | RGATCY | 1 cut(s) | 890 |
| MhlI | GDGCHC | 2 cut(s) | 1020, 1597 |
| MlsI | TGGCCA | 2 cut(s) | 617, 1418 |
| MluCI | AATT | 5 cut(s) | 17, 22, 335, 1096, 1260 |
| MluNI | TGGCCA | 2 cut(s) | 617, 1418 |
| MlyI | GAGTC | 1 cut(s) | 1180 |
| MmeI | TCCRAC | 2 cut(s) | 509, 734 |
| Mox20I | TGGCCA | 2 cut(s) | 617, 1418 |
| MroXI | GAANNNNTTC | 2 cut(s) | 100, 497 |
| MscI | TGGCCA | 2 cut(s) | 617, 1418 |
| MseI | TTAA | 3 cut(s) | 21, 852, 1271 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1113, 1211 |
| Msp20I | TGGCCA | 2 cut(s) | 617, 1418 |
| MspA1I | CMGCKG | 4 cut(s) | 545, 865, 1049, 1193 |
| MspI | CCGG | 1 cut(s) | 1067 |
| MspR9I | CCNGG | 1 cut(s) | 796 |
| MunI | CAATTG | 1 cut(s) | 1096 |
| MvaI | CCWGG | 1 cut(s) | 796 |
| MvnI | CGCG | 1 cut(s) | 977 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 113, 241, 514, 523, 862, 877, 1015, 1331 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| NlaIV | GGNNCC | 2 cut(s) | 708, 739 |
| NmuCI | GTSAC | 1 cut(s) | 372 |
| NspI | RCATGY | 2 cut(s) | 904, 1180 |
| PceI | AGGCCT | 2 cut(s) | 481, 942 |
| PdmI | GAANNNNTTC | 2 cut(s) | 100, 497 |
| PfeI | GAWTC | 3 cut(s) | 247, 1391, 1510 |
| PleI | GAGTC | 1 cut(s) | 1180 |
| PpsI | GAGTC | 1 cut(s) | 1180 |
| Ppu21I | YACGTR | 1 cut(s) | 520 |
| PpuMI | RGGWCCY | 1 cut(s) | 737 |
| Psp124BI | GAGCTC | 1 cut(s) | 1597 |
| Psp5II | RGGWCCY | 1 cut(s) | 737 |
| Psp6I | CCWGG | 1 cut(s) | 794 |
| PspFI | CCCAGC | 1 cut(s) | 290 |
| PspGI | CCWGG | 1 cut(s) | 794 |
| PspN4I | GGNNCC | 2 cut(s) | 708, 739 |
| PspPI | GGNCC | 3 cut(s) | 707, 737, 1227 |
| PspPPI | RGGWCCY | 1 cut(s) | 737 |
| PstI | CTGCAG | 1 cut(s) | 571 |
| PsuI | RGATCY | 1 cut(s) | 890 |
| PvuII | CAGCTG | 3 cut(s) | 545, 865, 1193 |
| RsaI | GTAC | 2 cut(s) | 550, 1577 |
| RsaNI | GTAC | 2 cut(s) | 549, 1576 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1113, 1211 |
| SacI | GAGCTC | 1 cut(s) | 1597 |
| SaqAI | TTAA | 3 cut(s) | 21, 852, 1271 |
| Sau3AI | GATC | 4 cut(s) | 340, 890, 931, 1630 |
| Sau96I | GGNCC | 3 cut(s) | 707, 737, 1227 |
| ScaI | AGTACT | 1 cut(s) | 1577 |
| SchI | GAGTC | 1 cut(s) | 1180 |
| ScrFI | CCNGG | 1 cut(s) | 796 |
| SduI | GDGCHC | 2 cut(s) | 1020, 1597 |
| SfaNI | GCATC | 5 cut(s) | 252, 622, 1069, 1190, 1510 |
| SfcI | CTRYAG | 2 cut(s) | 567, 1440 |
| SinI | GGWCC | 2 cut(s) | 707, 737 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1113, 1211 |
| SmlI | CTYRAG | 1 cut(s) | 663 |
| SmoI | CTYRAG | 1 cut(s) | 663 |
| Sse9I | AATT | 5 cut(s) | 17, 22, 335, 1096, 1260 |
| SseBI | AGGCCT | 2 cut(s) | 481, 942 |
| SsiI | CCGC | 4 cut(s) | 700, 977, 1049, 1081 |
| SspI | AATATT | 3 cut(s) | 63, 283, 496 |
| SspMI | CTAG | 2 cut(s) | 888, 1551 |
| SstI | GAGCTC | 1 cut(s) | 1597 |
| StuI | AGGCCT | 2 cut(s) | 481, 942 |
| StyD4I | CCNGG | 1 cut(s) | 794 |
| StyI | CCWWGG | 2 cut(s) | 606, 1342 |
| TaaI | ACNGT | 2 cut(s) | 314, 372 |
| TaiI | ACGT | 1 cut(s) | 522 |
| TaqI | TCGA | 3 cut(s) | 987, 1042, 1624 |
| TasI | AATT | 5 cut(s) | 17, 22, 335, 1096, 1260 |
| TatI | WGTACW | 1 cut(s) | 1575 |
| TauI | GCSGC | 2 cut(s) | 980, 1084 |
| TfiI | GAWTC | 3 cut(s) | 247, 1391, 1510 |
| Tru1I | TTAA | 3 cut(s) | 21, 852, 1271 |
| Tru9I | TTAA | 3 cut(s) | 21, 852, 1271 |
| TscAI | CASTG | 2 cut(s) | 319, 768 |
| TseFI | GTSAC | 1 cut(s) | 372 |
| Tsp45I | GTSAC | 1 cut(s) | 372 |
| TspDTI | ATGAA | 9 cut(s) | 100, 289, 419, 971, 1131, 1139, 1195, 1383, 1463 |
| TspGWI | ACGGA | 1 cut(s) | 1289 |
| TspRI | CASTG | 2 cut(s) | 319, 768 |
| VpaK11BI | GGWCC | 2 cut(s) | 707, 737 |
| XapI | RAATTY | 1 cut(s) | 17 |
| XceI | RCATGY | 2 cut(s) | 904, 1180 |
| XmnI | GAANNNNTTC | 2 cut(s) | 100, 497 |
| XspI | CTAG | 2 cut(s) | 888, 1551 |
| ZrmI | AGTACT | 1 cut(s) | 1577 |